Wall clock time and date at job start Wed Apr 1 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38145 * 119.55049 * 2 1 4 4 C 1.39816 * 119.00371 * 179.97438 * 3 2 1 5 5 C 1.48144 * 120.92378 * 179.97438 * 4 3 2 6 6 O 1.21517 * 119.99871 * 331.79839 * 5 4 3 7 7 N 1.34773 * 120.00019 * 151.81059 * 5 4 3 8 8 C 1.48188 * 127.80183 * 183.34245 * 7 5 4 9 9 C 1.54509 * 104.63170 * 140.73290 * 8 7 5 10 10 C 1.53841 * 104.79513 * 23.79716 * 9 8 7 11 11 C 1.48256 * 127.80206 * 3.38149 * 7 5 4 12 12 C 1.52476 * 110.21760 * 240.96690 * 10 9 8 13 13 C 1.53122 * 109.65968 * 178.09022 * 12 10 9 14 14 C 1.52749 * 109.36429 * 60.35861 * 13 12 10 15 15 N 1.46934 * 109.08536 * 305.08857 * 14 13 12 16 16 C 1.36941 * 120.67294 * 234.05437 * 15 14 13 17 17 H 1.07995 * 119.99853 * 30.80265 * 16 15 14 18 18 C 1.38817 * 119.99637 * 211.07841 * 16 15 14 19 19 N 1.31617 * 119.99925 * 10.31401 * 18 16 15 20 20 Si 1.86797 * 119.99896 * 190.31255 * 18 16 15 21 21 H 1.48507 * 109.47200 * 89.99757 * 20 18 16 22 22 H 1.48495 * 109.47116 * 210.00238 * 20 18 16 23 23 H 1.48507 * 109.47054 * 330.00103 * 20 18 16 24 24 C 1.47022 * 118.64699 * 53.78063 * 15 14 13 25 25 C 1.39817 * 118.15138 * 0.25787 * 4 3 2 26 26 C 1.38153 * 119.00170 * 359.47445 * 25 4 3 27 27 C 1.50705 * 119.55251 * 180.27166 * 26 25 4 28 28 N 1.31812 * 119.54974 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46580 * 90.00037 * 1 2 3 30 30 H 1.09002 * 109.46910 * 209.99670 * 1 2 3 31 31 H 1.08998 * 109.47307 * 329.99814 * 1 2 3 32 32 H 1.08006 * 120.49845 * 359.97438 * 3 2 1 33 33 H 1.08999 * 110.40420 * 21.94607 * 8 7 5 34 34 H 1.08993 * 110.40540 * 259.51959 * 8 7 5 35 35 H 1.09005 * 110.37282 * 264.97531 * 9 8 7 36 36 H 1.08997 * 110.47147 * 142.67957 * 9 8 7 37 37 H 1.08999 * 110.42593 * 100.36408 * 11 7 5 38 38 H 1.09003 * 110.42476 * 337.88197 * 11 7 5 39 39 H 1.08999 * 109.44083 * 298.14128 * 12 10 9 40 40 H 1.09001 * 109.44309 * 58.02959 * 12 10 9 41 41 H 1.08993 * 109.49978 * 180.43489 * 13 12 10 42 42 H 1.09000 * 109.49634 * 300.53815 * 13 12 10 43 43 H 1.09006 * 109.49797 * 185.18142 * 14 13 12 44 44 H 1.09003 * 109.41817 * 64.94676 * 14 13 12 45 45 H 0.97004 * 119.99859 * 180.02562 * 19 18 16 46 46 H 1.08993 * 109.57903 * 67.33163 * 24 15 14 47 47 H 1.09006 * 109.57232 * 187.58222 * 24 15 14 48 48 H 1.08004 * 120.50005 * 179.72390 * 25 4 3 49 49 H 1.08999 * 109.46799 * 270.26068 * 27 26 25 50 50 H 1.09000 * 109.46641 * 30.26360 * 27 26 25 51 51 H 1.08999 * 109.46838 * 150.26083 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5865 1.1884 0.0005 5 6 4.3599 2.4519 0.0000 6 8 3.8862 3.4540 -0.4982 7 7 5.5889 2.4900 0.5518 8 6 6.4789 3.6647 0.7070 9 6 7.1247 3.4838 2.0990 10 6 7.0433 1.9728 2.3765 11 6 6.3562 1.3660 1.1399 12 6 6.2078 1.7106 3.6247 13 6 6.0954 0.2020 3.8619 14 6 7.4915 -0.3846 4.0615 15 7 8.3325 -0.0254 2.9114 16 6 8.9930 -0.9914 2.2002 17 1 8.5706 -1.9815 2.1128 18 6 10.2084 -0.6996 1.5963 19 7 10.8249 0.4305 1.8703 20 14 10.9690 -1.9109 0.3948 21 1 10.4959 -1.6078 -0.9799 22 1 12.4486 -1.7957 0.4457 23 1 10.5671 -3.2922 0.7633 24 6 8.4455 1.3916 2.5361 25 6 4.2344 -0.0506 -0.0045 26 6 3.4740 -1.2041 0.0013 27 6 4.1595 -2.5462 0.0022 28 7 2.1572 -1.1467 0.0005 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6492 2.1376 -0.0004 33 1 5.8996 4.5874 0.6739 34 1 7.2438 3.6671 -0.0694 35 1 6.5650 4.0385 2.8520 36 1 8.1643 3.8111 2.0823 37 1 7.1003 1.0017 0.4317 38 1 5.6842 0.5601 1.4353 39 1 6.6851 2.1785 4.4857 40 1 5.2115 2.1318 3.4896 41 1 5.4914 0.0174 4.7501 42 1 5.6259 -0.2681 2.9978 43 1 7.4226 -1.4698 4.1387 44 1 7.9281 0.0212 4.9740 45 1 11.6740 0.6346 1.4481 46 1 8.9793 1.9345 3.3160 47 1 8.9880 1.4778 1.5945 48 1 5.3130 -0.1051 -0.0087 49 1 4.3251 -2.8702 -1.0252 50 1 5.1172 -2.4646 0.5164 51 1 3.5320 -3.2743 0.5163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040225842.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:21 Heat of formation + Delta-G solvation = 10.441244 kcal Electronic energy + Delta-G solvation = -31998.871461 eV Core-core repulsion = 28090.933499 eV Total energy + Delta-G solvation = -3907.937962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.08738 -40.96617 -39.66854 -37.31264 -34.92081 -34.73283 -34.23258 -32.77969 -31.78716 -30.33978 -30.01905 -27.83538 -27.40934 -27.15039 -25.52649 -23.97534 -23.54866 -22.97466 -21.80782 -20.53217 -19.76835 -18.61783 -18.44196 -17.45560 -17.29640 -16.95335 -16.71398 -16.37897 -15.82882 -15.70647 -15.50346 -15.28692 -15.12290 -14.79278 -14.56738 -14.33229 -14.17487 -14.08625 -14.04558 -13.82466 -13.31628 -13.25388 -13.00709 -12.93616 -12.83643 -12.81221 -12.70973 -12.65385 -12.43763 -12.43124 -12.06011 -11.92167 -11.78434 -11.53182 -11.36445 -11.04704 -11.02213 -10.92436 -10.54920 -10.45999 -9.91044 -9.79824 -8.55009 -7.81036 -5.29791 -0.36193 -0.01993 1.49441 1.52482 1.57794 1.58845 1.74782 2.54402 2.63974 3.12731 3.16218 3.34002 3.52240 3.60686 3.75760 3.85470 3.87819 3.90758 3.96117 4.23627 4.25884 4.29148 4.34296 4.43936 4.47803 4.49797 4.52596 4.65388 4.70916 4.74278 4.76629 4.78470 4.80534 4.86221 4.93145 4.96382 5.01744 5.06077 5.11778 5.13349 5.17681 5.21727 5.22174 5.30261 5.35294 5.49385 5.61694 5.62200 5.72051 5.81591 6.32930 6.47555 6.84183 6.87510 7.23054 7.91956 8.45733 9.24733 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.004298 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.351193 B = 6513.158477 C = 7516.981706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.126 3.874 3 C -0.133 4.133 4 C -0.085 4.085 5 C 0.576 3.424 6 O -0.571 6.571 7 N -0.609 5.609 8 C 0.107 3.893 9 C -0.117 4.117 10 C -0.088 4.088 11 C 0.117 3.883 12 C -0.089 4.089 13 C -0.127 4.127 14 C 0.142 3.858 15 N -0.606 5.606 16 C -0.252 4.252 17 H 0.068 0.932 18 C -0.041 4.041 19 N -0.933 5.933 20 Si 0.954 3.046 21 H -0.287 1.287 22 H -0.301 1.301 23 H -0.268 1.268 24 C 0.203 3.797 25 C -0.161 4.161 26 C 0.129 3.871 27 C -0.104 4.104 28 N -0.485 5.485 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.011 0.989 45 H 0.248 0.752 46 H -0.002 1.002 47 H 0.060 0.940 48 H 0.147 0.853 49 H 0.090 0.910 50 H 0.082 0.918 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.413 0.685 -0.669 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.012 4.012 3 C -0.154 4.154 4 C -0.096 4.096 5 C 0.365 3.635 6 O -0.452 6.452 7 N -0.340 5.340 8 C -0.015 4.015 9 C -0.156 4.156 10 C -0.091 4.091 11 C -0.004 4.004 12 C -0.127 4.127 13 C -0.165 4.165 14 C 0.016 3.984 15 N -0.329 5.329 16 C -0.382 4.382 17 H 0.086 0.914 18 C -0.237 4.237 19 N -0.579 5.579 20 Si 0.784 3.216 21 H -0.213 1.213 22 H -0.228 1.228 23 H -0.193 1.193 24 C 0.077 3.923 25 C -0.182 4.182 26 C -0.008 4.008 27 C -0.162 4.162 28 N -0.197 5.197 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.169 0.831 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.029 0.971 45 H 0.057 0.943 46 H 0.016 0.984 47 H 0.078 0.922 48 H 0.165 0.835 49 H 0.109 0.891 50 H 0.101 0.899 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.046 0.467 -1.013 17.083 hybrid contribution 1.816 0.421 -0.641 1.971 sum -15.230 0.888 -1.654 15.346 Atomic orbital electron populations 1.20824 0.85632 1.04779 1.04388 1.21798 0.98834 0.86971 0.93573 1.22156 0.92387 1.00801 1.00049 1.20263 0.94981 0.92889 1.01474 1.18030 0.79887 0.87889 0.77649 1.90730 1.70145 1.36731 1.47612 1.49064 1.14852 1.12804 1.57273 1.22455 0.92348 0.88857 0.97845 1.22521 1.01858 0.95259 0.95930 1.21693 0.97868 0.94808 0.94692 1.22797 0.94161 0.89112 0.94360 1.21322 0.98477 0.96490 0.96415 1.21906 0.97589 0.95628 1.01404 1.20946 0.90417 0.97939 0.89060 1.44241 1.54423 1.02911 1.31280 1.19448 0.99196 0.93851 1.25722 0.91423 1.25730 0.96431 0.98778 1.02728 1.70101 1.16468 1.25724 1.45631 0.85461 0.76959 0.79777 0.79444 1.21343 1.22807 1.19306 1.20493 0.90132 0.83118 0.98544 1.22630 1.02374 0.92030 1.01117 1.21595 0.89156 0.96433 0.93598 1.20818 1.00215 0.90928 1.04196 1.67340 1.09761 1.30004 1.12572 0.88965 0.89778 0.88701 0.83054 0.89555 0.90777 0.89655 0.89872 0.91928 0.88587 0.91946 0.92379 0.90502 0.92639 0.92807 0.97085 0.94301 0.98436 0.92174 0.83522 0.89118 0.89904 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 10.17 71.24 0.72 -0.73 16 2 C 0.13 2.91 6.78 42.54 0.29 3.20 16 3 C -0.13 -3.40 9.32 22.63 0.21 -3.19 16 4 C -0.09 -2.51 5.75 -19.88 -0.11 -2.63 16 5 C 0.58 18.99 7.72 86.88 0.67 19.66 16 6 O -0.57 -21.48 17.05 -3.77 -0.06 -21.54 16 7 N -0.61 -19.05 3.32 -811.29 -2.69 -21.74 16 8 C 0.11 3.06 7.05 86.57 0.61 3.67 16 9 C -0.12 -3.30 6.29 31.39 0.20 -3.10 16 10 C -0.09 -2.88 0.68 -51.88 -0.04 -2.91 16 11 C 0.12 3.80 4.04 86.36 0.35 4.15 16 12 C -0.09 -2.64 4.48 30.46 0.14 -2.50 16 13 C -0.13 -3.79 5.87 30.55 0.18 -3.61 16 14 C 0.14 5.30 6.47 86.21 0.56 5.86 16 15 N -0.61 -27.09 2.82 -700.75 -1.98 -29.07 16 16 C -0.25 -12.51 9.59 84.03 0.81 -11.70 16 17 H 0.07 3.27 7.85 -2.91 -0.02 3.25 16 18 C -0.04 -2.12 5.06 84.86 0.43 -1.69 16 19 N -0.93 -51.50 11.05 21.65 0.24 -51.26 16 20 Si 0.95 42.21 29.57 68.60 2.03 44.24 16 21 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 C 0.20 8.67 3.61 86.16 0.31 8.98 16 25 C -0.16 -4.53 7.64 22.63 0.17 -4.35 16 26 C 0.13 3.36 6.78 42.54 0.29 3.65 16 27 C -0.10 -2.20 10.16 71.24 0.72 -1.48 16 28 N -0.48 -12.53 10.16 -172.21 -1.75 -14.28 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.04 8.08 -2.39 -0.02 1.02 16 32 H 0.15 3.47 7.97 -2.91 -0.02 3.45 16 33 H 0.09 2.35 7.91 -2.39 -0.02 2.33 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.08 2.12 7.70 -2.38 -0.02 2.10 16 36 H 0.08 2.39 7.70 -2.39 -0.02 2.37 16 37 H 0.06 2.32 7.68 -2.39 -0.02 2.31 16 38 H 0.10 3.03 3.03 -2.39 -0.01 3.02 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.69 6.21 -2.39 -0.01 1.68 16 43 H 0.05 1.98 7.93 -2.38 -0.02 1.96 16 44 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 46 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 47 H 0.06 2.96 5.97 -2.38 -0.01 2.94 16 48 H 0.15 4.25 5.23 -2.91 -0.02 4.24 16 49 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 51 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -62.66 393.81 3.21 -59.45 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.93 Total: 22.93 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 6.51 Total: 11.27 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -6.18 Total: -116.35 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.06 Total: -21.54 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -62.66 3.21 -59.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040225842.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.888 kcal (2) G-P(sol) polarization free energy of solvation -62.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds