Wall clock time and date at job start Wed Apr 1 2020 01:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38149 * 119.54991 * 2 1 4 4 C 1.39819 * 119.00112 * 179.97438 * 3 2 1 5 5 C 1.48150 * 120.92546 * 179.97438 * 4 3 2 6 6 O 1.21507 * 120.00332 * 172.90749 * 5 4 3 7 7 N 1.34773 * 119.99569 * 352.90268 * 5 4 3 8 8 C 1.47485 * 125.66094 * 184.84409 * 7 5 4 9 9 C 1.55280 * 104.77719 * 155.89376 * 8 7 5 10 10 C 1.54496 * 101.41509 * 36.68526 * 9 8 7 11 11 C 1.47197 * 125.66465 * 5.15546 * 7 5 4 12 12 C 1.52243 * 110.24630 * 83.57425 * 10 9 8 13 13 C 1.53161 * 109.66229 * 62.95626 * 12 10 9 14 14 C 1.53198 * 109.27191 * 60.18243 * 13 12 10 15 15 N 1.46936 * 108.91125 * 304.75765 * 14 13 12 16 16 C 1.36936 * 120.69960 * 234.17185 * 15 14 13 17 17 H 1.08000 * 120.00534 * 149.89150 * 16 15 14 18 18 C 1.38819 * 119.99822 * 329.89693 * 16 15 14 19 19 N 1.31626 * 119.99548 * 168.50428 * 18 16 15 20 20 Si 1.86794 * 120.00140 * 348.50001 * 18 16 15 21 21 H 1.48504 * 109.46762 * 92.40267 * 20 18 16 22 22 H 1.48496 * 109.47342 * 212.40402 * 20 18 16 23 23 H 1.48502 * 109.47240 * 332.40487 * 20 18 16 24 24 C 1.47071 * 118.60002 * 54.17575 * 15 14 13 25 25 C 1.39818 * 118.15494 * 359.97438 * 4 3 2 26 26 C 1.38147 * 118.99978 * 0.02562 * 25 4 3 27 27 C 1.50707 * 119.55203 * 180.02562 * 26 25 4 28 28 N 1.31807 * 120.89826 * 0.02562 * 26 25 4 29 29 H 1.09002 * 109.47203 * 269.99953 * 1 2 3 30 30 H 1.08998 * 109.47156 * 29.99714 * 1 2 3 31 31 H 1.09002 * 109.46998 * 149.99984 * 1 2 3 32 32 H 1.07993 * 120.50232 * 0.02562 * 3 2 1 33 33 H 1.09003 * 110.35200 * 274.85385 * 8 7 5 34 34 H 1.09002 * 110.35188 * 37.13898 * 8 7 5 35 35 H 1.09000 * 111.22897 * 278.59211 * 9 8 7 36 36 H 1.09001 * 110.90203 * 154.64125 * 9 8 7 37 37 H 1.08998 * 109.90500 * 300.86745 * 11 7 5 38 38 H 1.08998 * 109.90814 * 61.94392 * 11 7 5 39 39 H 1.09000 * 109.43809 * 183.01266 * 12 10 9 40 40 H 1.09002 * 109.44099 * 302.93997 * 12 10 9 41 41 H 1.09008 * 109.50789 * 180.11569 * 13 12 10 42 42 H 1.08998 * 109.51158 * 300.19904 * 13 12 10 43 43 H 1.08993 * 109.56142 * 64.58874 * 14 13 12 44 44 H 1.09006 * 109.56141 * 184.81640 * 14 13 12 45 45 H 0.96998 * 119.99157 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.57572 * 187.74876 * 24 15 14 47 47 H 1.09000 * 109.57888 * 67.36437 * 24 15 14 48 48 H 1.08000 * 120.50129 * 180.02562 * 25 4 3 49 49 H 1.09000 * 109.47041 * 269.97978 * 27 26 25 50 50 H 1.09004 * 109.46957 * 29.98009 * 27 26 25 51 51 H 1.08999 * 109.47181 * 149.97418 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2018 0.0000 4 6 3.5864 1.1884 0.0005 5 6 4.3599 2.4519 0.0000 6 8 5.5677 2.4250 0.1304 7 7 3.7239 3.6312 -0.1452 8 6 4.3739 4.9497 -0.2645 9 6 3.3383 5.8360 -1.0083 10 6 2.0097 5.3186 -0.4134 11 6 2.2650 3.8179 -0.2047 12 6 1.7236 6.0066 0.9142 13 6 1.5442 7.5106 0.6871 14 6 0.3682 7.7411 -0.2672 15 7 0.6013 6.9806 -1.5027 16 6 0.5685 7.6017 -2.7227 17 1 1.1760 7.2299 -3.5345 18 6 -0.2457 8.7094 -2.9159 19 7 -0.1143 9.4411 -4.0021 20 14 -1.5274 9.1614 -1.6345 21 1 -0.9450 10.1312 -0.6725 22 1 -2.7027 9.7738 -2.3045 23 1 -1.9536 7.9384 -0.9078 24 6 0.8705 5.5383 -1.4014 25 6 4.2343 -0.0506 0.0016 26 6 3.4740 -1.2040 0.0016 27 6 4.1594 -2.5462 0.0033 28 7 2.1572 -1.1466 0.0000 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6492 2.1375 0.0004 33 1 4.5865 5.3583 0.7234 34 1 5.2913 4.8688 -0.8477 35 1 3.3762 5.6684 -2.0847 36 1 3.4880 6.8897 -0.7729 37 1 1.8522 3.2515 -1.0394 38 1 1.8102 3.4874 0.7291 39 1 0.8126 5.5940 1.3477 40 1 2.5575 5.8402 1.5962 41 1 1.3416 8.0009 1.6393 42 1 2.4537 7.9240 0.2513 43 1 -0.5548 7.4009 0.2022 44 1 0.2896 8.8032 -0.4997 45 1 -0.6835 10.2148 -4.1373 46 1 1.1553 5.1504 -2.3794 47 1 -0.0233 5.0238 -1.0485 48 1 5.3129 -0.1051 0.0025 49 1 4.3255 -2.8706 -1.0239 50 1 5.1169 -2.4645 0.5179 51 1 3.5317 -3.2741 0.5173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040225849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:26 Heat of formation + Delta-G solvation = 44.887730 kcal Electronic energy + Delta-G solvation = -31081.152188 eV Core-core repulsion = 27174.707937 eV Total energy + Delta-G solvation = -3906.444250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.22293 -40.05502 -38.61043 -36.26130 -34.11012 -33.43649 -32.91524 -31.28893 -30.97792 -29.82936 -29.34732 -27.05373 -26.31750 -25.43556 -24.62010 -22.52962 -22.22267 -21.91199 -21.44974 -19.76237 -18.41620 -17.42529 -16.92209 -16.51553 -16.13106 -16.11241 -15.54417 -15.43520 -15.05805 -14.49576 -14.18882 -14.12277 -13.93746 -13.80290 -13.54177 -13.51221 -13.36310 -12.96591 -12.89454 -12.68420 -12.44040 -12.38204 -12.29332 -12.20148 -12.14618 -11.86569 -11.57293 -11.42058 -11.00900 -10.82462 -10.61203 -10.47478 -10.34745 -10.07920 -10.01595 -9.89757 -9.69794 -9.58538 -9.45914 -9.05847 -8.76275 -8.72298 -7.01192 -5.98623 -3.42409 0.52191 0.81621 2.68408 2.75613 3.25535 3.40593 3.44090 3.55034 3.88860 4.08517 4.36211 4.39838 4.45743 4.72530 4.75472 4.80279 4.84584 4.99772 5.10274 5.17519 5.22340 5.23555 5.26301 5.28541 5.28906 5.36311 5.37805 5.39585 5.49511 5.58664 5.64499 5.66092 5.74263 5.77030 5.81752 5.84543 5.87291 5.99679 6.03899 6.16622 6.25086 6.29045 6.37139 6.40427 6.45218 6.47480 6.53103 6.61045 6.85078 7.32103 7.71076 7.90851 7.92831 8.27218 8.85728 9.64589 10.01668 11.17224 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.002937 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.375911 B = 9531.927852 C =10291.236066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.130 3.870 3 C -0.180 4.180 4 C -0.075 4.075 5 C 0.571 3.429 6 O -0.536 6.536 7 N -0.603 5.603 8 C 0.105 3.895 9 C -0.110 4.110 10 C -0.088 4.088 11 C 0.098 3.902 12 C -0.096 4.096 13 C -0.137 4.137 14 C 0.120 3.880 15 N -0.602 5.602 16 C -0.259 4.259 17 H 0.086 0.914 18 C 0.022 3.978 19 N -0.915 5.915 20 Si 0.894 3.106 21 H -0.291 1.291 22 H -0.307 1.307 23 H -0.266 1.266 24 C 0.167 3.833 25 C -0.125 4.125 26 C 0.125 3.875 27 C -0.102 4.102 28 N -0.473 5.473 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.171 0.829 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.030 0.970 44 H 0.069 0.931 45 H 0.263 0.737 46 H 0.066 0.934 47 H 0.026 0.974 48 H 0.145 0.855 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.699 -17.704 10.953 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.008 4.008 3 C -0.200 4.200 4 C -0.085 4.085 5 C 0.360 3.640 6 O -0.414 6.414 7 N -0.336 5.336 8 C -0.017 4.017 9 C -0.148 4.148 10 C -0.090 4.090 11 C -0.024 4.024 12 C -0.133 4.133 13 C -0.176 4.176 14 C -0.005 4.005 15 N -0.326 5.326 16 C -0.387 4.387 17 H 0.103 0.897 18 C -0.177 4.177 19 N -0.558 5.558 20 Si 0.726 3.274 21 H -0.219 1.219 22 H -0.235 1.235 23 H -0.191 1.191 24 C 0.040 3.960 25 C -0.145 4.145 26 C -0.012 4.012 27 C -0.160 4.160 28 N -0.185 5.185 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.188 0.812 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.044 0.956 48 H 0.163 0.837 49 H 0.098 0.902 50 H 0.095 0.905 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.854 -18.390 10.896 21.920 hybrid contribution -0.242 1.254 0.682 1.448 sum 4.612 -17.136 11.578 21.189 Atomic orbital electron populations 1.20759 0.88182 1.03990 1.03370 1.21308 0.97237 0.87722 0.94513 1.23514 0.94218 1.01886 1.00347 1.20277 0.93837 0.93866 1.00559 1.17837 0.86687 0.82313 0.77179 1.90764 1.13737 1.86743 1.50178 1.48438 1.07901 1.06382 1.70884 1.22497 0.97088 0.81397 1.00691 1.22812 0.91975 0.99887 1.00085 1.21686 0.98120 0.91412 0.97827 1.22608 0.80537 0.97967 1.01316 1.21306 1.00688 0.96269 0.95062 1.22102 1.01144 0.95140 0.99240 1.21473 0.94827 0.96799 0.87421 1.44258 1.83705 1.02414 1.02200 1.18888 1.20571 1.10859 0.88415 0.89683 1.25338 0.97935 0.98085 0.96309 1.69755 1.40871 1.17804 1.27343 0.86852 0.81717 0.78161 0.80638 1.21867 1.23535 1.19146 1.20752 0.92940 0.86069 0.96247 1.22050 1.02001 0.91180 0.99309 1.21242 0.89173 0.95672 0.95141 1.20720 0.99851 0.92087 1.03311 1.67205 1.09633 1.29811 1.11847 0.90172 0.90125 0.90252 0.81247 0.91335 0.90497 0.90233 0.88815 0.90029 0.90528 0.92185 0.92773 0.92681 0.91394 0.95232 0.91284 0.92718 0.91543 0.95627 0.83717 0.90206 0.90496 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.17 36.00 0.37 -0.47 16 2 C 0.13 1.40 6.78 -82.64 -0.56 0.84 16 3 C -0.18 -1.98 8.31 -39.02 -0.32 -2.30 16 4 C -0.07 -0.94 5.91 -104.65 -0.62 -1.56 16 5 C 0.57 8.22 7.83 -12.19 -0.10 8.12 16 6 O -0.54 -9.20 16.77 5.36 0.09 -9.11 16 7 N -0.60 -7.88 3.33 -171.77 -0.57 -8.45 16 8 C 0.10 1.36 6.58 -2.29 -0.02 1.34 16 9 C -0.11 -1.54 5.75 -24.74 -0.14 -1.68 16 10 C -0.09 -1.19 0.55 -154.09 -0.09 -1.28 16 11 C 0.10 1.13 4.06 -3.33 -0.01 1.11 16 12 C -0.10 -1.26 4.55 -27.03 -0.12 -1.38 16 13 C -0.14 -2.12 5.90 -26.55 -0.16 -2.28 16 14 C 0.12 2.37 4.09 -3.70 -0.02 2.35 16 15 N -0.60 -12.80 2.64 -172.67 -0.46 -13.25 16 16 C -0.26 -6.73 10.10 -15.06 -0.15 -6.89 16 17 H 0.09 2.39 8.06 -52.49 -0.42 1.97 16 18 C 0.02 0.61 5.38 -17.42 -0.09 0.52 16 19 N -0.91 -27.22 13.97 55.49 0.78 -26.45 16 20 Si 0.89 21.54 24.27 -169.99 -4.13 17.42 16 21 H -0.29 -6.81 6.70 56.52 0.38 -6.43 16 22 H -0.31 -7.65 7.11 56.52 0.40 -7.25 16 23 H -0.27 -6.14 5.92 56.52 0.33 -5.80 16 24 C 0.17 2.80 5.07 -4.04 -0.02 2.78 16 25 C -0.12 -1.46 9.31 -39.02 -0.36 -1.82 16 26 C 0.13 1.36 6.78 -82.63 -0.56 0.80 16 27 C -0.10 -0.76 10.17 36.01 0.37 -0.39 16 28 N -0.47 -5.57 10.16 -5.79 -0.06 -5.63 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.17 1.62 2.96 -52.83 -0.16 1.46 16 33 H 0.07 0.85 7.73 -51.93 -0.40 0.44 16 34 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 35 H 0.08 1.22 7.91 -51.93 -0.41 0.81 16 36 H 0.09 1.40 6.00 -51.93 -0.31 1.09 16 37 H 0.08 0.88 6.27 -51.93 -0.33 0.56 16 38 H 0.08 0.76 6.58 -51.93 -0.34 0.42 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.65 7.46 -51.93 -0.39 0.26 16 41 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 42 H 0.07 1.09 6.23 -51.93 -0.32 0.76 16 43 H 0.03 0.58 6.69 -51.93 -0.35 0.24 16 44 H 0.07 1.53 4.18 -51.93 -0.22 1.31 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 46 H 0.07 1.15 7.79 -51.93 -0.40 0.74 16 47 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.15 1.58 7.76 -52.49 -0.41 1.17 16 49 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 51 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -31.96 383.29 -9.08 -41.04 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.90 Total: 0.83 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.61 Total: -2.18 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.31 Total: -53.78 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.13 Total: 17.42 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.96 -9.08 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040225849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.926 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds