Wall clock time and date at job start Wed Apr 1 2020 02:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38682 * 120.78679 * 2 1 4 4 C 1.38186 * 119.15953 * 179.76235 * 3 2 1 5 5 N 1.31881 * 120.76482 * 0.52564 * 4 3 2 6 6 C 1.31857 * 121.72759 * 359.74611 * 5 4 3 7 7 C 1.38221 * 120.76354 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.41867 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47303 * 265.01789 * 8 7 6 10 10 O 1.21288 * 119.99958 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00571 * 180.02562 * 9 8 7 12 12 C 1.47491 * 125.65817 * 359.69121 * 11 9 8 13 13 C 1.55285 * 104.77994 * 155.88711 * 12 11 9 14 14 C 1.54481 * 101.42105 * 36.67213 * 13 12 11 15 15 C 1.47176 * 125.66888 * 180.02562 * 11 9 8 16 16 C 1.52232 * 110.29562 * 206.46424 * 14 13 12 17 17 C 1.53162 * 109.65145 * 178.00173 * 16 14 13 18 18 C 1.53192 * 109.27229 * 60.18374 * 17 16 14 19 19 N 1.46931 * 108.92500 * 304.77601 * 18 17 16 20 20 C 1.36939 * 120.70018 * 234.13113 * 19 18 17 21 21 H 1.08003 * 119.99475 * 27.25153 * 20 19 18 22 22 C 1.38812 * 120.00140 * 207.24769 * 20 19 18 23 23 N 1.31614 * 119.99736 * 17.21174 * 22 20 19 24 24 Si 1.86795 * 120.00078 * 197.21950 * 22 20 19 25 25 H 1.48501 * 109.46789 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47256 * 119.99478 * 24 22 20 27 27 H 1.48497 * 109.47085 * 240.00142 * 24 22 20 28 28 C 1.47083 * 118.59966 * 54.15925 * 19 18 17 29 29 H 1.09009 * 109.46547 * 269.71685 * 1 2 3 30 30 H 1.09001 * 109.47296 * 149.72148 * 1 2 3 31 31 H 1.09000 * 109.47281 * 29.71332 * 1 2 3 32 32 H 1.07998 * 120.42192 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.61177 * 180.29683 * 4 3 2 34 34 H 1.08005 * 119.61411 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47278 * 25.02622 * 8 7 6 36 36 H 1.09012 * 109.46713 * 145.02059 * 8 7 6 37 37 H 1.08997 * 110.35674 * 274.85030 * 12 11 9 38 38 H 1.08995 * 110.35293 * 37.13771 * 12 11 9 39 39 H 1.08999 * 111.22854 * 278.57649 * 13 12 11 40 40 H 1.08999 * 110.89847 * 154.62747 * 13 12 11 41 41 H 1.09006 * 109.91025 * 300.89663 * 15 11 9 42 42 H 1.09006 * 109.91143 * 61.97480 * 15 11 9 43 43 H 1.09005 * 109.44159 * 298.06158 * 16 14 13 44 44 H 1.09002 * 109.44271 * 57.98246 * 16 14 13 45 45 H 1.09008 * 109.50355 * 180.12173 * 17 16 14 46 46 H 1.09000 * 109.50694 * 300.20179 * 17 16 14 47 47 H 1.08999 * 109.56220 * 64.60750 * 18 17 16 48 48 H 1.08994 * 109.56179 * 184.83040 * 18 17 16 49 49 H 0.97007 * 119.99846 * 180.02562 * 23 22 20 50 50 H 1.08995 * 109.57507 * 187.74704 * 28 19 18 51 51 H 1.09000 * 109.57983 * 67.34916 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1522 0.0050 5 7 4.2403 0.0003 -0.0007 6 6 3.5984 -1.1515 -0.0063 7 6 2.2167 -1.1908 -0.0059 8 6 1.4910 -2.5115 -0.0129 9 6 1.1403 -2.8845 -1.4302 10 8 1.4497 -2.1503 -2.3447 11 7 0.4829 -4.0338 -1.6816 12 6 0.0536 -5.0178 -0.6703 13 6 -1.1338 -5.7709 -1.3293 14 6 -0.6712 -5.8427 -2.8015 15 6 0.0802 -4.5188 -3.0116 16 6 -1.8747 -5.9322 -3.7294 17 6 -1.4017 -5.9523 -5.1860 18 6 -0.4988 -7.1699 -5.4076 19 7 0.5979 -7.1341 -4.4305 20 6 1.9027 -7.1982 -4.8413 21 1 2.1775 -6.8430 -5.8235 22 6 2.8719 -7.7196 -3.9954 23 7 2.5174 -8.4518 -2.9607 24 14 4.6792 -7.3819 -4.3253 25 1 4.8114 -6.5396 -5.5412 26 1 5.2701 -6.6708 -3.1633 27 1 5.3928 -8.6673 -4.5343 28 6 0.2648 -7.0285 -3.0018 29 1 -0.3633 -0.0051 1.0278 30 1 -0.3634 -0.8875 -0.5181 31 1 -0.3634 0.8925 -0.5094 32 1 1.6967 2.1379 0.0004 33 1 4.1582 2.0756 0.0099 34 1 4.1587 -2.0748 -0.0112 35 1 2.1322 -3.2808 0.4173 36 1 0.5782 -2.4276 0.5772 37 1 0.8659 -5.7086 -0.4447 38 1 -0.2764 -4.5103 0.2362 39 1 -2.0602 -5.2041 -1.2379 40 1 -1.2445 -6.7689 -0.9053 41 1 -0.5764 -3.7913 -3.4889 42 1 0.9629 -4.6836 -3.6296 43 1 -2.4305 -6.8452 -3.5157 44 1 -2.5206 -5.0687 -3.5701 45 1 -2.2653 -6.0143 -5.8483 46 1 -0.8436 -5.0409 -5.4001 47 1 -1.0782 -8.0833 -5.2726 48 1 -0.0908 -7.1426 -6.4179 49 1 3.1946 -8.8158 -2.3693 50 1 1.1767 -6.8758 -2.4245 51 1 -0.2289 -7.9431 -2.6733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040245045.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:46 Heat of formation + Delta-G solvation = 15.450488 kcal Electronic energy + Delta-G solvation = -31355.902404 eV Core-core repulsion = 27448.181659 eV Total energy + Delta-G solvation = -3907.720745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.66978 -39.89039 -38.24323 -35.73863 -34.43396 -33.20184 -32.55342 -31.48008 -30.03662 -28.97552 -28.54833 -27.60584 -25.50960 -25.21456 -23.26274 -22.78369 -22.11686 -21.72224 -20.47899 -19.01745 -18.14887 -16.93558 -16.89617 -16.75136 -16.47982 -15.70621 -15.37173 -14.85260 -14.79851 -14.22887 -14.07963 -13.89597 -13.74746 -13.47640 -13.19220 -13.06041 -12.98644 -12.85592 -12.75271 -12.67299 -12.44206 -12.32598 -12.11052 -11.88294 -11.60350 -11.46906 -11.32672 -10.99888 -10.92341 -10.64914 -10.40093 -10.27470 -10.14951 -9.85338 -9.74598 -9.53665 -9.48306 -9.44798 -9.41962 -8.96803 -8.49480 -8.27558 -6.70824 -5.82367 -3.22851 1.05207 1.21136 2.85679 3.25043 3.37190 3.45957 3.49191 3.78133 4.35289 4.48322 4.56451 4.59336 4.68494 4.78907 4.83445 4.86461 5.07506 5.17491 5.22587 5.28537 5.35217 5.38204 5.40470 5.48105 5.49987 5.57307 5.61585 5.66005 5.70722 5.76797 5.83938 5.98581 5.99197 6.03968 6.13939 6.16887 6.25868 6.27095 6.37629 6.44688 6.49642 6.64228 6.67785 6.73738 6.82274 6.85738 6.97341 7.25662 7.56597 7.78836 7.82634 7.94951 8.41145 8.41894 9.18502 9.81848 10.37847 11.26305 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011317 B = 0.003695 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.667833 B = 7576.684746 C = 9072.622530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.176 4.176 4 C 0.096 3.904 5 N -0.488 5.488 6 C 0.116 3.884 7 C -0.114 4.114 8 C -0.096 4.096 9 C 0.526 3.474 10 O -0.538 6.538 11 N -0.612 5.612 12 C 0.099 3.901 13 C -0.122 4.122 14 C -0.093 4.093 15 C 0.129 3.871 16 C -0.092 4.092 17 C -0.138 4.138 18 C 0.144 3.856 19 N -0.590 5.590 20 C -0.249 4.249 21 H 0.066 0.934 22 C 0.005 3.995 23 N -0.903 5.903 24 Si 0.896 3.104 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.188 3.812 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.132 0.868 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.017 0.983 48 H 0.052 0.948 49 H 0.252 0.748 50 H 0.091 0.909 51 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 12.694 10.024 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.196 4.196 4 C -0.061 4.061 5 N -0.197 5.197 6 C -0.041 4.041 7 C -0.116 4.116 8 C -0.137 4.137 9 C 0.314 3.686 10 O -0.415 6.415 11 N -0.346 5.346 12 C -0.024 4.024 13 C -0.161 4.161 14 C -0.095 4.095 15 C 0.007 3.993 16 C -0.130 4.130 17 C -0.177 4.177 18 C 0.018 3.982 19 N -0.313 5.313 20 C -0.378 4.378 21 H 0.084 0.916 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.726 3.274 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.217 1.217 28 C 0.062 3.938 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.150 0.850 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.035 0.965 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.109 0.891 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.541 13.074 9.626 17.902 hybrid contribution 0.046 0.029 -0.113 0.126 sum -7.495 13.103 9.513 17.843 Atomic orbital electron populations 1.20840 0.90511 1.03665 1.02400 1.20118 0.96587 0.92456 0.94332 1.21966 0.95636 0.98360 1.03606 1.22699 0.91754 0.96232 0.95384 1.67680 1.41093 0.98429 1.12504 1.22642 0.90942 0.96367 0.94162 1.20196 0.94974 0.94284 1.02138 1.20591 1.01984 0.95453 0.95628 1.19957 0.77806 0.80187 0.90654 1.90726 1.53391 1.50713 1.46667 1.48584 1.56415 1.19969 1.09599 1.22462 0.97644 0.91177 0.91130 1.22788 0.96539 1.00663 0.96103 1.21851 0.96793 0.97546 0.93314 1.21955 0.99934 0.93871 0.83508 1.21256 0.95853 1.00570 0.95300 1.22075 0.99107 1.01002 0.95523 1.20906 0.89795 0.93767 0.93766 1.44061 1.01377 1.84938 1.00889 1.19218 0.83055 1.34038 1.01523 0.91649 1.24951 0.98117 0.97308 0.98930 1.70027 1.32135 1.34775 1.17815 0.86318 0.85624 0.77593 0.77904 1.20213 1.21538 1.21692 1.20685 0.96543 0.90490 0.86115 0.90546 0.91050 0.90938 0.84992 0.82972 0.82891 0.87678 0.87990 0.90553 0.91356 0.91356 0.89765 0.92889 0.89653 0.92198 0.93444 0.93070 0.92284 0.96468 0.92894 0.93775 0.89113 0.96123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.31 36.01 0.34 -0.78 16 2 C -0.03 -0.32 5.92 -104.31 -0.62 -0.94 16 3 C -0.18 -1.92 9.82 -39.44 -0.39 -2.31 16 4 C 0.10 1.14 11.18 -17.55 -0.20 0.94 16 5 N -0.49 -7.06 10.36 -13.25 -0.14 -7.20 16 6 C 0.12 1.64 10.84 -17.55 -0.19 1.45 16 7 C -0.11 -1.50 4.39 -104.48 -0.46 -1.96 16 8 C -0.10 -1.16 4.18 -29.04 -0.12 -1.28 16 9 C 0.53 8.67 7.17 -10.99 -0.08 8.59 16 10 O -0.54 -11.09 16.36 5.55 0.09 -11.00 16 11 N -0.61 -9.93 3.33 -170.51 -0.57 -10.50 16 12 C 0.10 1.30 6.40 -2.29 -0.01 1.29 16 13 C -0.12 -1.63 6.01 -24.74 -0.15 -1.78 16 14 C -0.09 -1.57 0.54 -154.09 -0.08 -1.66 16 15 C 0.13 2.37 5.05 -3.33 -0.02 2.36 16 16 C -0.09 -1.42 4.52 -27.04 -0.12 -1.54 16 17 C -0.14 -2.31 5.92 -26.55 -0.16 -2.46 16 18 C 0.14 2.91 6.49 -3.71 -0.02 2.89 16 19 N -0.59 -14.11 2.62 -172.67 -0.45 -14.56 16 20 C -0.25 -6.70 9.60 -15.06 -0.14 -6.84 16 21 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 22 C 0.01 0.14 4.92 -17.43 -0.09 0.06 16 23 N -0.90 -25.21 11.17 55.49 0.62 -24.59 16 24 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C 0.19 4.09 3.73 -4.03 -0.02 4.07 16 29 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 31 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.15 1.98 8.06 -52.48 -0.42 1.55 16 35 H 0.10 1.11 8.06 -51.93 -0.42 0.69 16 36 H 0.10 0.94 6.81 -51.92 -0.35 0.59 16 37 H 0.08 1.09 7.89 -51.93 -0.41 0.68 16 38 H 0.07 0.66 7.48 -51.93 -0.39 0.27 16 39 H 0.07 0.79 8.02 -51.93 -0.42 0.38 16 40 H 0.08 1.08 7.98 -51.93 -0.41 0.66 16 41 H 0.05 0.96 7.61 -51.93 -0.40 0.57 16 42 H 0.09 1.95 7.56 -51.93 -0.39 1.55 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 45 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 46 H 0.06 1.05 7.28 -51.93 -0.38 0.67 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 1.07 7.94 -51.93 -0.41 0.66 16 49 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 50 H 0.09 2.25 5.61 -51.93 -0.29 1.95 16 51 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -32.88 396.60 -10.40 -43.28 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.37 Total: 1.57 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.53 Total: 0.10 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.54 Total: -56.86 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.88 -10.40 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040245045.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.729 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds