Wall clock time and date at job start Wed Apr 1 2020 03:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38629 * 120.75491 * 2 1 4 4 C 1.38569 * 119.34951 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.54556 * 180.02562 * 4 3 2 6 6 N 1.31513 * 120.90602 * 0.02562 * 4 3 2 7 7 C 1.32725 * 121.64378 * 0.02562 * 6 4 3 8 8 C 1.48162 * 119.72323 * 179.97438 * 7 6 4 9 9 O 1.21517 * 119.99729 * 184.85425 * 8 7 6 10 10 N 1.34778 * 120.00284 * 4.85304 * 8 7 6 11 11 C 1.48164 * 127.02585 * 174.36632 * 10 8 7 12 12 C 1.55049 * 103.31363 * 141.01633 * 11 10 8 13 13 C 1.54157 * 102.73491 * 36.98761 * 12 11 10 14 14 C 1.47614 * 127.02495 * 354.40752 * 10 8 7 15 15 C 1.52490 * 110.05572 * 219.39551 * 13 12 11 16 16 C 1.53133 * 109.58131 * 178.27513 * 15 13 12 17 17 C 1.53124 * 109.32465 * 60.51503 * 16 15 13 18 18 N 1.46933 * 108.88079 * 304.92155 * 17 16 15 19 19 C 1.36937 * 120.68005 * 234.04707 * 18 17 16 20 20 H 1.07999 * 120.00435 * 35.21372 * 19 18 17 21 21 C 1.38816 * 119.99925 * 215.22098 * 19 18 17 22 22 N 1.31622 * 119.99480 * 355.61384 * 21 19 18 23 23 Si 1.86799 * 120.00192 * 175.61817 * 21 19 18 24 24 H 1.48507 * 109.46942 * 59.99645 * 23 21 19 25 25 H 1.48499 * 109.47111 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46871 * 299.99728 * 23 21 19 27 27 C 1.47032 * 118.63997 * 54.01802 * 18 17 16 28 28 C 1.38595 * 120.75855 * 180.25533 * 2 1 3 29 29 H 1.08994 * 109.47366 * 89.99845 * 1 2 3 30 30 H 1.08996 * 109.47137 * 210.00000 * 1 2 3 31 31 H 1.08999 * 109.46893 * 330.00110 * 1 2 3 32 32 H 1.07995 * 120.32809 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47472 * 269.98099 * 5 4 3 34 34 H 1.09003 * 109.47291 * 29.98312 * 5 4 3 35 35 H 1.09001 * 109.46955 * 149.97592 * 5 4 3 36 36 H 1.08997 * 110.64666 * 259.46682 * 11 10 8 37 37 H 1.08994 * 110.65330 * 22.39453 * 11 10 8 38 38 H 1.09007 * 110.75436 * 278.67943 * 12 11 10 39 39 H 1.08988 * 110.76004 * 155.30312 * 12 11 10 40 40 H 1.09006 * 109.96796 * 85.96439 * 14 10 8 41 41 H 1.08992 * 109.97170 * 324.69403 * 14 10 8 42 42 H 1.09007 * 109.44683 * 298.29233 * 15 13 12 43 43 H 1.08999 * 109.45241 * 58.24404 * 15 13 12 44 44 H 1.09002 * 109.49869 * 180.43963 * 16 15 13 45 45 H 1.09007 * 109.49728 * 300.54243 * 16 15 13 46 46 H 1.08996 * 109.57112 * 185.09917 * 17 16 15 47 47 H 1.08997 * 109.67061 * 64.80073 * 17 16 15 48 48 H 0.97002 * 119.99305 * 180.02562 * 22 21 19 49 49 H 1.08994 * 109.58953 * 187.41522 * 27 18 17 50 50 H 1.09007 * 109.69135 * 67.06713 * 27 18 17 51 51 H 1.07999 * 120.46562 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6011 1.1573 -0.0005 5 6 4.3762 2.4498 0.0000 6 7 4.2487 0.0127 -0.0016 7 6 3.6082 -1.1497 -0.0026 8 6 4.3806 -2.4141 -0.0043 9 8 3.8025 -3.4791 -0.0943 10 7 5.7244 -2.3830 0.0940 11 6 6.6366 -3.5434 0.2236 12 6 7.8469 -3.1467 -0.6607 13 6 7.9685 -1.6305 -0.4099 14 6 6.5882 -1.1859 0.0953 15 6 8.3143 -0.9116 -1.7095 16 6 8.3901 0.5969 -1.4570 17 6 9.4812 0.8831 -0.4214 18 7 9.2095 0.0919 0.7865 19 6 9.1230 0.6958 2.0125 20 1 8.6948 1.6835 2.0990 21 6 9.5857 0.0384 3.1442 22 7 10.0278 -1.1979 3.0524 23 14 9.5808 0.9083 4.7973 24 1 8.1906 1.2939 5.1495 25 1 10.1199 -0.0034 5.8380 26 1 10.4273 2.1258 4.7183 27 6 9.0318 -1.3614 0.6519 28 6 2.2158 -1.1910 -0.0053 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6937 2.1366 0.0004 33 1 4.5630 2.7619 -1.0275 34 1 3.7999 3.2189 0.5144 35 1 5.3263 2.3034 0.5138 36 1 6.9453 -3.6756 1.2606 37 1 6.1623 -4.4493 -0.1536 38 1 7.6401 -3.3490 -1.7117 39 1 8.7488 -3.6655 -0.3364 40 1 6.6721 -0.7886 1.1069 41 1 6.1747 -0.4279 -0.5698 42 1 9.2775 -1.2671 -2.0757 43 1 7.5447 -1.1168 -2.4536 44 1 8.6296 1.1101 -2.3883 45 1 7.4301 0.9517 -1.0819 46 1 9.4779 1.9440 -0.1714 47 1 10.4541 0.6068 -0.8276 48 1 10.3508 -1.6574 3.8433 49 1 8.7102 -1.7801 1.6054 50 1 9.9735 -1.8202 0.3504 51 1 1.6959 -2.1376 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040271830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:54 Heat of formation + Delta-G solvation = 22.897309 kcal Electronic energy + Delta-G solvation = -31938.006395 eV Core-core repulsion = 28030.608568 eV Total energy + Delta-G solvation = -3907.397827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.74758 -39.53865 -38.08575 -35.60074 -34.34002 -33.05526 -32.78828 -31.26252 -29.96887 -28.73046 -28.13086 -27.51752 -25.70145 -25.29507 -24.36802 -22.54226 -21.92734 -21.27107 -20.29818 -19.31865 -18.03531 -17.26397 -16.74771 -16.21804 -15.98268 -15.59876 -15.32892 -14.77891 -14.54561 -14.02454 -13.95280 -13.81710 -13.63021 -13.48300 -13.12855 -13.00858 -12.84305 -12.74289 -12.55624 -12.46675 -12.30671 -12.21184 -12.01901 -11.83567 -11.52299 -11.46046 -11.04525 -10.90260 -10.78969 -10.61512 -10.37964 -10.25664 -10.11667 -10.03386 -9.80386 -9.60207 -9.39975 -9.32894 -9.09702 -9.00990 -8.42608 -8.17672 -6.51356 -5.77199 -3.28761 0.68701 1.15136 2.88073 3.22080 3.38027 3.43705 3.44200 3.89102 4.12427 4.45364 4.48803 4.56915 4.89341 4.97876 5.06054 5.16841 5.23707 5.27675 5.33466 5.34205 5.45265 5.52044 5.59396 5.62714 5.64163 5.65497 5.73915 5.82265 5.85710 5.93378 5.95496 6.12482 6.13836 6.22906 6.26659 6.30242 6.38064 6.43909 6.47488 6.55864 6.58757 6.72071 6.78244 6.88180 6.97507 7.06441 7.11124 7.42966 7.79430 7.81074 7.81856 7.93274 8.39872 8.54532 9.26696 9.85907 10.46481 11.28782 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010213 B = 0.004237 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.953612 B = 6606.482603 C = 7359.506644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.158 4.158 4 C 0.132 3.868 5 C -0.107 4.107 6 N -0.446 5.446 7 C 0.097 3.903 8 C 0.582 3.418 9 O -0.553 6.553 10 N -0.595 5.595 11 C 0.105 3.895 12 C -0.123 4.123 13 C -0.100 4.100 14 C 0.126 3.874 15 C -0.092 4.092 16 C -0.137 4.137 17 C 0.146 3.854 18 N -0.591 5.591 19 C -0.249 4.249 20 H 0.062 0.938 21 C 0.011 3.989 22 N -0.904 5.904 23 Si 0.899 3.101 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.185 3.815 28 C -0.125 4.125 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.055 0.945 43 H 0.042 0.958 44 H 0.046 0.954 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.015 0.985 48 H 0.254 0.746 49 H 0.101 0.899 50 H 0.016 0.984 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.813 3.230 -8.766 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.058 4.058 3 C -0.178 4.178 4 C -0.008 4.008 5 C -0.164 4.164 6 N -0.159 5.159 7 C -0.041 4.041 8 C 0.370 3.630 9 O -0.432 6.432 10 N -0.326 5.326 11 C -0.017 4.017 12 C -0.162 4.162 13 C -0.103 4.103 14 C 0.004 3.996 15 C -0.130 4.130 16 C -0.177 4.177 17 C 0.020 3.980 18 N -0.313 5.313 19 C -0.379 4.379 20 H 0.080 0.920 21 C -0.188 4.188 22 N -0.548 5.548 23 Si 0.728 3.272 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.059 3.941 28 C -0.146 4.146 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.154 0.846 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.033 0.967 48 H 0.065 0.935 49 H 0.119 0.881 50 H 0.034 0.966 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.199 2.551 -8.646 15.983 hybrid contribution -0.793 0.434 0.927 1.295 sum -13.991 2.985 -7.719 16.256 Atomic orbital electron populations 1.20805 0.89875 1.03439 1.02918 1.20288 0.96903 0.92564 0.96014 1.22049 0.94887 0.98691 1.02137 1.21431 0.91045 0.94150 0.94152 1.20770 1.01061 0.91331 1.03246 1.67785 1.39962 0.97444 1.10722 1.21115 0.91401 0.92214 0.99376 1.17450 0.80844 0.87285 0.77465 1.90735 1.69454 1.30456 1.52552 1.48801 1.04427 1.10811 1.68543 1.22551 0.89425 0.89082 1.00658 1.22705 0.97676 0.96834 0.98943 1.21985 0.97343 0.92949 0.97995 1.22501 0.87566 0.86062 1.03437 1.21341 1.00038 0.95849 0.95734 1.22081 1.01253 0.95535 0.98792 1.20893 0.93911 0.95411 0.87819 1.43965 1.82319 1.02737 1.02299 1.19060 1.33557 1.01172 0.84120 0.92024 1.25274 0.98147 0.96714 0.98636 1.69865 1.45970 1.10446 1.28547 0.86437 0.77798 0.79086 0.83837 1.21064 1.21646 1.20900 1.20967 0.92015 0.84728 0.96392 1.21925 0.93747 0.99352 0.99597 0.90474 0.90847 0.90935 0.84608 0.90316 0.90761 0.89356 0.90441 0.90515 0.91813 0.89920 0.90163 0.88813 0.92650 0.93886 0.93485 0.91962 0.93073 0.96696 0.93529 0.88077 0.96569 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.06 36.00 0.36 -0.48 16 2 C -0.05 -0.55 5.91 -104.35 -0.62 -1.17 16 3 C -0.16 -1.71 9.45 -39.31 -0.37 -2.08 16 4 C 0.13 1.74 6.78 -82.61 -0.56 1.18 16 5 C -0.11 -1.17 10.17 36.01 0.37 -0.80 16 6 N -0.45 -7.22 6.72 -6.06 -0.04 -7.26 16 7 C 0.10 1.61 6.73 -83.01 -0.56 1.06 16 8 C 0.58 10.89 7.87 -12.18 -0.10 10.79 16 9 O -0.55 -11.17 16.53 5.35 0.09 -11.08 16 10 N -0.60 -11.00 3.30 -170.82 -0.56 -11.56 16 11 C 0.10 1.79 7.11 -2.04 -0.01 1.77 16 12 C -0.12 -2.00 6.15 -25.04 -0.15 -2.15 16 13 C -0.10 -1.84 0.62 -154.05 -0.09 -1.94 16 14 C 0.13 2.39 4.60 -3.14 -0.01 2.37 16 15 C -0.09 -1.55 4.43 -26.92 -0.12 -1.67 16 16 C -0.14 -2.33 5.86 -26.60 -0.16 -2.49 16 17 C 0.15 2.95 6.50 -3.74 -0.02 2.92 16 18 N -0.59 -14.02 2.80 -172.60 -0.48 -14.50 16 19 C -0.25 -6.53 9.56 -15.06 -0.14 -6.67 16 20 H 0.06 1.59 7.83 -52.49 -0.41 1.18 16 21 C 0.01 0.29 5.32 -17.43 -0.09 0.20 16 22 N -0.90 -25.18 10.62 55.49 0.59 -24.59 16 23 Si 0.90 21.30 29.56 -169.99 -5.02 16.28 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.18 4.18 3.57 -3.93 -0.01 4.16 16 28 C -0.13 -1.73 9.34 -39.05 -0.36 -2.09 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.08 1.24 7.81 -51.93 -0.41 0.83 16 38 H 0.06 0.96 7.84 -51.93 -0.41 0.55 16 39 H 0.08 1.31 7.79 -51.94 -0.40 0.90 16 40 H 0.08 1.81 7.63 -51.93 -0.40 1.41 16 41 H 0.09 1.75 4.40 -51.93 -0.23 1.52 16 42 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.09 6.58 -51.92 -0.34 0.75 16 46 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 47 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.10 2.61 5.92 -51.93 -0.31 2.30 16 50 H 0.02 0.39 8.09 -51.93 -0.42 -0.03 16 51 H 0.14 1.88 7.65 -52.49 -0.40 1.48 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -30.46 396.13 -10.47 -40.93 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -8.34 Total: 2.91 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.67 Total: 2.92 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.50 Total: -57.92 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.46 -10.47 -40.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040271830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.828 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds