Wall clock time and date at job start Wed Apr 1 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38629 * 120.75491 * 2 1 4 4 C 1.38569 * 119.34951 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.54556 * 180.02562 * 4 3 2 6 6 N 1.31513 * 120.90602 * 0.02562 * 4 3 2 7 7 C 1.32725 * 121.64378 * 0.02562 * 6 4 3 8 8 C 1.48162 * 119.72323 * 179.97438 * 7 6 4 9 9 O 1.21517 * 119.99729 * 184.85425 * 8 7 6 10 10 N 1.34778 * 120.00284 * 4.85304 * 8 7 6 11 11 C 1.48164 * 127.02585 * 174.36632 * 10 8 7 12 12 C 1.55049 * 103.31363 * 141.01633 * 11 10 8 13 13 C 1.54157 * 102.73491 * 36.98761 * 12 11 10 14 14 C 1.47614 * 127.02495 * 354.40752 * 10 8 7 15 15 C 1.52490 * 110.05572 * 219.39551 * 13 12 11 16 16 C 1.53133 * 109.58131 * 178.27513 * 15 13 12 17 17 C 1.53124 * 109.32465 * 60.51503 * 16 15 13 18 18 N 1.46933 * 108.88079 * 304.92155 * 17 16 15 19 19 C 1.36937 * 120.68005 * 234.04707 * 18 17 16 20 20 H 1.07999 * 120.00435 * 35.21372 * 19 18 17 21 21 C 1.38816 * 119.99925 * 215.22098 * 19 18 17 22 22 N 1.31622 * 119.99480 * 355.61384 * 21 19 18 23 23 Si 1.86799 * 120.00192 * 175.61817 * 21 19 18 24 24 H 1.48507 * 109.46942 * 59.99645 * 23 21 19 25 25 H 1.48499 * 109.47111 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46871 * 299.99728 * 23 21 19 27 27 C 1.47032 * 118.63997 * 54.01802 * 18 17 16 28 28 C 1.38595 * 120.75855 * 180.25533 * 2 1 3 29 29 H 1.08994 * 109.47366 * 89.99845 * 1 2 3 30 30 H 1.08996 * 109.47137 * 210.00000 * 1 2 3 31 31 H 1.08999 * 109.46893 * 330.00110 * 1 2 3 32 32 H 1.07995 * 120.32809 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47472 * 269.98099 * 5 4 3 34 34 H 1.09003 * 109.47291 * 29.98312 * 5 4 3 35 35 H 1.09001 * 109.46955 * 149.97592 * 5 4 3 36 36 H 1.08997 * 110.64666 * 259.46682 * 11 10 8 37 37 H 1.08994 * 110.65330 * 22.39453 * 11 10 8 38 38 H 1.09007 * 110.75436 * 278.67943 * 12 11 10 39 39 H 1.08988 * 110.76004 * 155.30312 * 12 11 10 40 40 H 1.09006 * 109.96796 * 85.96439 * 14 10 8 41 41 H 1.08992 * 109.97170 * 324.69403 * 14 10 8 42 42 H 1.09007 * 109.44683 * 298.29233 * 15 13 12 43 43 H 1.08999 * 109.45241 * 58.24404 * 15 13 12 44 44 H 1.09002 * 109.49869 * 180.43963 * 16 15 13 45 45 H 1.09007 * 109.49728 * 300.54243 * 16 15 13 46 46 H 1.08996 * 109.57112 * 185.09917 * 17 16 15 47 47 H 1.08997 * 109.67061 * 64.80073 * 17 16 15 48 48 H 0.97002 * 119.99305 * 180.02562 * 22 21 19 49 49 H 1.08994 * 109.58953 * 187.41522 * 27 18 17 50 50 H 1.09007 * 109.69135 * 67.06713 * 27 18 17 51 51 H 1.07999 * 120.46562 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6011 1.1573 -0.0005 5 6 4.3762 2.4498 0.0000 6 7 4.2487 0.0127 -0.0016 7 6 3.6082 -1.1497 -0.0026 8 6 4.3806 -2.4141 -0.0043 9 8 3.8025 -3.4791 -0.0943 10 7 5.7244 -2.3830 0.0940 11 6 6.6366 -3.5434 0.2236 12 6 7.8469 -3.1467 -0.6607 13 6 7.9685 -1.6305 -0.4099 14 6 6.5882 -1.1859 0.0953 15 6 8.3143 -0.9116 -1.7095 16 6 8.3901 0.5969 -1.4570 17 6 9.4812 0.8831 -0.4214 18 7 9.2095 0.0919 0.7865 19 6 9.1230 0.6958 2.0125 20 1 8.6948 1.6835 2.0990 21 6 9.5857 0.0384 3.1442 22 7 10.0278 -1.1979 3.0524 23 14 9.5808 0.9083 4.7973 24 1 8.1906 1.2939 5.1495 25 1 10.1199 -0.0034 5.8380 26 1 10.4273 2.1258 4.7183 27 6 9.0318 -1.3614 0.6519 28 6 2.2158 -1.1910 -0.0053 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6937 2.1366 0.0004 33 1 4.5630 2.7619 -1.0275 34 1 3.7999 3.2189 0.5144 35 1 5.3263 2.3034 0.5138 36 1 6.9453 -3.6756 1.2606 37 1 6.1623 -4.4493 -0.1536 38 1 7.6401 -3.3490 -1.7117 39 1 8.7488 -3.6655 -0.3364 40 1 6.6721 -0.7886 1.1069 41 1 6.1747 -0.4279 -0.5698 42 1 9.2775 -1.2671 -2.0757 43 1 7.5447 -1.1168 -2.4536 44 1 8.6296 1.1101 -2.3883 45 1 7.4301 0.9517 -1.0819 46 1 9.4779 1.9440 -0.1714 47 1 10.4541 0.6068 -0.8276 48 1 10.3508 -1.6574 3.8433 49 1 8.7102 -1.7801 1.6054 50 1 9.9735 -1.8202 0.3504 51 1 1.6959 -2.1376 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040271830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:53 Heat of formation + Delta-G solvation = 6.903257 kcal Electronic energy + Delta-G solvation = -31938.699949 eV Core-core repulsion = 28030.608568 eV Total energy + Delta-G solvation = -3908.091381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.94340 -40.88006 -39.56293 -37.22286 -35.25689 -34.80693 -33.89539 -32.78057 -31.74739 -30.21081 -29.03132 -28.32208 -27.35887 -27.02820 -25.67936 -24.01119 -23.56160 -22.20769 -21.82438 -20.66969 -19.62486 -18.66827 -18.44522 -17.34117 -17.10108 -17.00208 -16.73953 -16.51707 -15.78806 -15.67873 -15.34039 -15.20306 -14.86058 -14.70456 -14.46800 -14.13863 -14.12339 -13.99361 -13.84288 -13.75996 -13.44233 -13.17446 -13.10626 -13.03812 -12.96498 -12.83374 -12.65287 -12.56618 -12.50042 -12.38359 -12.10277 -11.85718 -11.78537 -11.45659 -11.36708 -11.02203 -10.92285 -10.50078 -10.48975 -10.26391 -10.06854 -9.65926 -8.46100 -7.80707 -5.34193 -0.39030 0.20006 1.46407 1.47294 1.53308 1.60065 1.87455 2.51972 2.77357 2.98664 3.33715 3.48234 3.64786 3.66815 3.80414 3.93392 3.98443 4.00177 4.02688 4.27919 4.33643 4.34990 4.42142 4.49859 4.51464 4.62497 4.68559 4.73591 4.76347 4.79414 4.82051 4.82859 4.95116 4.98032 5.03261 5.04855 5.07876 5.14279 5.20925 5.26193 5.27306 5.28312 5.31880 5.37832 5.43107 5.59421 5.68154 5.70864 5.73735 5.91188 6.44323 6.52517 6.71563 7.04164 7.24668 7.93680 8.47746 9.22264 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010213 B = 0.004237 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.953612 B = 6606.482603 C = 7359.506644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.045 4.045 3 C -0.141 4.141 4 C 0.115 3.885 5 C -0.102 4.102 6 N -0.477 5.477 7 C 0.063 3.937 8 C 0.577 3.423 9 O -0.576 6.576 10 N -0.602 5.602 11 C 0.102 3.898 12 C -0.113 4.113 13 C -0.096 4.096 14 C 0.149 3.851 15 C -0.088 4.088 16 C -0.126 4.126 17 C 0.142 3.858 18 N -0.607 5.607 19 C -0.253 4.253 20 H 0.062 0.938 21 C -0.041 4.041 22 N -0.930 5.930 23 Si 0.956 3.044 24 H -0.282 1.282 25 H -0.296 1.296 26 H -0.275 1.275 27 C 0.200 3.800 28 C -0.130 4.130 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.178 0.822 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.014 0.986 48 H 0.247 0.753 49 H 0.063 0.937 50 H -0.006 1.006 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.083 5.326 -10.493 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.052 4.052 3 C -0.161 4.161 4 C -0.025 4.025 5 C -0.159 4.159 6 N -0.191 5.191 7 C -0.074 4.074 8 C 0.365 3.635 9 O -0.457 6.457 10 N -0.332 5.332 11 C -0.020 4.020 12 C -0.151 4.151 13 C -0.099 4.099 14 C 0.027 3.973 15 C -0.125 4.125 16 C -0.165 4.165 17 C 0.017 3.983 18 N -0.330 5.330 19 C -0.383 4.383 20 H 0.080 0.920 21 C -0.236 4.236 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.208 1.208 25 H -0.223 1.223 26 H -0.201 1.201 27 C 0.074 3.926 28 C -0.152 4.152 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.195 0.805 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.119 0.881 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.031 0.969 48 H 0.057 0.943 49 H 0.082 0.918 50 H 0.012 0.988 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.469 4.662 -10.397 19.212 hybrid contribution -0.163 -0.137 1.470 1.485 sum -15.633 4.525 -8.927 18.562 Atomic orbital electron populations 1.20908 0.86783 1.04741 1.04309 1.20733 0.98916 0.91454 0.94145 1.22475 0.93890 1.00335 0.99376 1.21935 0.92632 0.93832 0.94132 1.20813 0.99848 0.91074 1.04187 1.67640 1.41239 0.98178 1.12034 1.20912 0.92268 0.91542 1.02660 1.17956 0.80773 0.88159 0.76564 1.90694 1.69760 1.31574 1.53684 1.48891 1.04752 1.10790 1.68744 1.22580 0.89829 0.89405 1.00146 1.22670 0.97367 0.95076 1.00007 1.21825 0.95478 0.94886 0.97695 1.22122 0.87970 0.86367 1.00863 1.21324 1.01024 0.95438 0.94758 1.21953 0.99523 0.95974 0.99018 1.21037 0.95052 0.94964 0.87231 1.44191 1.82671 1.03323 1.02843 1.19329 1.32540 1.01052 0.85390 0.92023 1.25907 0.98764 0.97329 1.01633 1.70058 1.47379 1.11507 1.28697 0.85526 0.77701 0.78087 0.80229 1.20837 1.22279 1.20057 1.20610 0.92023 0.84122 0.95875 1.22063 0.92783 1.00750 0.99568 0.88836 0.90538 0.88711 0.80506 0.88829 0.87831 0.92288 0.92007 0.89436 0.89532 0.89599 0.94621 0.88125 0.91917 0.91886 0.90129 0.92567 0.92943 0.96852 0.94322 0.91836 0.98795 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.06 71.23 0.72 -0.49 16 2 C -0.04 -0.87 5.91 -19.69 -0.12 -0.99 16 3 C -0.14 -2.59 9.45 22.44 0.21 -2.38 16 4 C 0.11 2.85 6.78 42.69 0.29 3.14 16 5 C -0.10 -2.03 10.17 71.24 0.72 -1.31 16 6 N -0.48 -15.50 6.72 -173.08 -1.16 -16.67 16 7 C 0.06 2.12 6.73 41.90 0.28 2.40 16 8 C 0.58 22.25 7.87 86.88 0.68 22.93 16 9 O -0.58 -23.92 16.53 -3.77 -0.06 -23.98 16 10 N -0.60 -23.01 3.30 -812.64 -2.68 -25.69 16 11 C 0.10 3.61 7.11 86.76 0.62 4.23 16 12 C -0.11 -3.67 6.15 31.69 0.19 -3.47 16 13 C -0.10 -3.59 0.62 -51.88 -0.03 -3.62 16 14 C 0.15 5.83 4.60 86.36 0.40 6.23 16 15 C -0.09 -2.81 4.43 30.47 0.13 -2.67 16 16 C -0.13 -4.05 5.86 30.68 0.18 -3.87 16 17 C 0.14 5.69 6.50 86.34 0.56 6.25 16 18 N -0.61 -29.60 2.80 -699.98 -1.96 -31.57 16 19 C -0.25 -13.61 9.56 84.03 0.80 -12.81 16 20 H 0.06 3.26 7.83 -2.91 -0.02 3.23 16 21 C -0.04 -2.26 5.32 84.86 0.45 -1.81 16 22 N -0.93 -54.21 10.62 21.65 0.23 -53.98 16 23 Si 0.96 44.96 29.56 68.60 2.03 46.99 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 27 C 0.20 9.41 3.57 86.16 0.31 9.72 16 28 C -0.13 -3.52 9.34 22.61 0.21 -3.30 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 31 H 0.09 0.66 8.10 -2.39 -0.02 0.64 16 32 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 1.41 8.08 -2.39 -0.02 1.39 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.09 2.88 7.81 -2.39 -0.02 2.86 16 38 H 0.09 2.45 7.84 -2.38 -0.02 2.44 16 39 H 0.09 2.75 7.79 -2.39 -0.02 2.73 16 40 H 0.04 1.71 7.63 -2.38 -0.02 1.69 16 41 H 0.10 3.81 4.40 -2.39 -0.01 3.80 16 42 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.06 1.90 6.58 -2.38 -0.02 1.88 16 46 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 47 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 49 H 0.06 3.49 5.92 -2.39 -0.01 3.48 16 50 H -0.01 -0.30 8.09 -2.38 -0.02 -0.32 16 51 H 0.14 3.75 7.65 -2.91 -0.02 3.73 16 Total: -1.00 -70.18 396.13 3.92 -66.26 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.92 Total: 20.47 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 6.62 Total: 18.18 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -5.58 Total: -127.90 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.06 Total: -23.98 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -70.18 3.92 -66.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040271830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.160 kcal (2) G-P(sol) polarization free energy of solvation -70.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds