Wall clock time and date at job start Wed Apr 1 2020 03:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38620 * 120.75670 * 2 1 4 4 C 1.38557 * 119.34974 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.54676 * 180.02562 * 4 3 2 6 6 N 1.31516 * 120.90764 * 0.02562 * 4 3 2 7 7 C 1.32716 * 121.64295 * 0.02562 * 6 4 3 8 8 C 1.48174 * 119.72729 * 179.97438 * 7 6 4 9 9 O 1.21515 * 120.00108 * 184.85751 * 8 7 6 10 10 N 1.34776 * 119.99637 * 4.85666 * 8 7 6 11 11 C 1.48154 * 127.02203 * 174.38273 * 10 8 7 12 12 C 1.55036 * 103.31496 * 141.00121 * 11 10 8 13 13 C 1.54189 * 102.72194 * 37.00747 * 12 11 10 14 14 C 1.47604 * 127.02701 * 354.40756 * 10 8 7 15 15 C 1.52498 * 110.00238 * 97.45889 * 13 12 11 16 16 C 1.53120 * 109.60475 * 61.57164 * 15 13 12 17 17 C 1.53181 * 109.29483 * 60.50469 * 16 15 13 18 18 N 1.46928 * 108.89547 * 304.93869 * 17 16 15 19 19 C 1.36940 * 120.67966 * 234.03987 * 18 17 16 20 20 H 1.08004 * 119.99978 * 35.21395 * 19 18 17 21 21 C 1.38812 * 120.00196 * 215.21820 * 19 18 17 22 22 N 1.31624 * 119.99564 * 355.62820 * 21 19 18 23 23 Si 1.86795 * 120.00308 * 175.62204 * 21 19 18 24 24 H 1.48504 * 109.47105 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47049 * 119.99899 * 23 21 19 26 26 H 1.48500 * 109.47309 * 240.00238 * 23 21 19 27 27 C 1.47035 * 118.63929 * 54.01081 * 18 17 16 28 28 C 1.38592 * 120.74976 * 180.26164 * 2 1 3 29 29 H 1.09003 * 109.47307 * 89.99684 * 1 2 3 30 30 H 1.09003 * 109.47318 * 210.00042 * 1 2 3 31 31 H 1.09008 * 109.46950 * 329.99679 * 1 2 3 32 32 H 1.07995 * 120.32417 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47230 * 269.97625 * 5 4 3 34 34 H 1.09001 * 109.47353 * 29.97500 * 5 4 3 35 35 H 1.09001 * 109.46952 * 149.98070 * 5 4 3 36 36 H 1.09000 * 110.65195 * 259.45925 * 11 10 8 37 37 H 1.09007 * 110.65448 * 22.38201 * 11 10 8 38 38 H 1.08993 * 110.76028 * 278.69711 * 12 11 10 39 39 H 1.09009 * 110.75975 * 155.31266 * 12 11 10 40 40 H 1.09008 * 109.97507 * 85.95434 * 14 10 8 41 41 H 1.09004 * 109.97533 * 324.68442 * 14 10 8 42 42 H 1.09003 * 109.44344 * 181.61201 * 15 13 12 43 43 H 1.08994 * 109.45182 * 301.52454 * 15 13 12 44 44 H 1.09006 * 109.50190 * 180.45287 * 16 15 13 45 45 H 1.09000 * 109.50057 * 300.55718 * 16 15 13 46 46 H 1.09000 * 109.57193 * 185.10679 * 17 16 15 47 47 H 1.09003 * 109.56401 * 64.76207 * 17 16 15 48 48 H 0.97003 * 119.99840 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.57904 * 187.41952 * 27 18 17 50 50 H 1.08999 * 109.58312 * 67.00891 * 27 18 17 51 51 H 1.07994 * 120.47549 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1912 0.0000 4 6 3.6010 1.1572 -0.0005 5 6 4.3762 2.4496 0.0000 6 7 4.2487 0.0126 -0.0016 7 6 3.6082 -1.1498 -0.0026 8 6 4.3805 -2.4143 -0.0043 9 8 3.8024 -3.4793 -0.0944 10 7 5.7243 -2.3832 0.0940 11 6 6.6364 -3.5435 0.2234 12 6 7.8465 -3.1468 -0.6610 13 6 7.9683 -1.6305 -0.4093 14 6 6.5880 -1.1862 0.0954 15 6 9.0330 -1.3613 0.6488 16 6 10.3906 -1.8653 0.1514 17 6 10.7651 -1.1240 -1.1358 18 7 9.6780 -1.2849 -2.1110 19 6 9.9312 -1.7717 -3.3656 20 1 10.6873 -2.5296 -3.5084 21 6 9.2162 -1.2910 -4.4540 22 7 8.2367 -0.4312 -4.2701 23 14 9.6441 -1.8642 -6.1796 24 1 10.7759 -2.8235 -6.1161 25 1 8.4638 -2.5298 -6.7870 26 1 10.0334 -0.6944 -7.0075 27 6 8.3125 -0.9131 -1.7119 28 6 2.2156 -1.1911 -0.0054 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6937 2.1365 -0.0004 33 1 4.5631 2.7617 -1.0275 34 1 3.7999 3.2188 0.5142 35 1 5.3263 2.3032 0.5137 36 1 6.9452 -3.6761 1.2603 37 1 6.1620 -4.4495 -0.1540 38 1 7.6396 -3.3487 -1.7119 39 1 8.7485 -3.6660 -0.3369 40 1 6.6718 -0.7887 1.1070 41 1 6.1747 -0.4281 -0.5698 42 1 9.0915 -0.2898 0.8402 43 1 8.7685 -1.8801 1.5701 44 1 11.1488 -1.6793 0.9122 45 1 10.3305 -2.9350 -0.0491 46 1 11.6858 -1.5418 -1.5431 47 1 10.9074 -0.0652 -0.9190 48 1 7.7368 -0.0955 -5.0306 49 1 7.6103 -1.2119 -2.4903 50 1 8.2568 0.1649 -1.5610 51 1 1.6958 -2.1376 -0.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040271833.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:58 Heat of formation + Delta-G solvation = 24.057210 kcal Electronic energy + Delta-G solvation = -31473.063680 eV Core-core repulsion = 27565.716151 eV Total energy + Delta-G solvation = -3907.347530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.77109 -39.57411 -38.12020 -35.66609 -34.34866 -33.06519 -32.77014 -31.00573 -29.84612 -29.27796 -28.15380 -27.55725 -25.62475 -25.25707 -24.38447 -22.46277 -21.81051 -21.30969 -20.61930 -19.35381 -17.87827 -17.29177 -16.63534 -16.30928 -16.00079 -15.70211 -15.37714 -14.77908 -14.63656 -14.08094 -13.97213 -13.81001 -13.50717 -13.48492 -13.18258 -13.06570 -12.91045 -12.77644 -12.55233 -12.40004 -12.32122 -12.27698 -12.03507 -11.87933 -11.72945 -11.54994 -11.02341 -10.90919 -10.70961 -10.51274 -10.31319 -10.14723 -10.09803 -9.98232 -9.69726 -9.62887 -9.56385 -9.35363 -9.09793 -9.03258 -8.43698 -8.26485 -6.49999 -5.75511 -3.27627 0.66469 1.12866 2.85426 3.16266 3.38039 3.45912 3.47154 3.85647 4.07995 4.43286 4.49626 4.53846 4.87224 4.96073 5.04806 5.13366 5.22539 5.28421 5.34481 5.39117 5.46790 5.53008 5.57256 5.60257 5.63760 5.64982 5.67514 5.73652 5.84269 5.90636 5.94516 6.04395 6.10830 6.15120 6.20936 6.24820 6.40921 6.45428 6.49273 6.54034 6.61322 6.64288 6.83237 6.87434 6.96221 7.06070 7.09433 7.47045 7.75734 7.81395 7.84682 7.87916 8.36036 8.56287 9.28103 9.87472 10.47664 11.30077 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011114 B = 0.003634 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.767094 B = 7702.338718 C = 8355.712925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.049 4.049 3 C -0.157 4.157 4 C 0.131 3.869 5 C -0.105 4.105 6 N -0.450 5.450 7 C 0.099 3.901 8 C 0.585 3.415 9 O -0.548 6.548 10 N -0.593 5.593 11 C 0.100 3.900 12 C -0.108 4.108 13 C -0.100 4.100 14 C 0.119 3.881 15 C -0.093 4.093 16 C -0.136 4.136 17 C 0.145 3.855 18 N -0.591 5.591 19 C -0.250 4.250 20 H 0.063 0.937 21 C 0.010 3.990 22 N -0.902 5.902 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.188 3.812 28 C -0.124 4.124 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.103 0.897 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.016 0.984 48 H 0.253 0.747 49 H 0.100 0.900 50 H 0.014 0.986 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.843 3.912 12.386 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.057 4.057 3 C -0.177 4.177 4 C -0.008 4.008 5 C -0.163 4.163 6 N -0.163 5.163 7 C -0.040 4.040 8 C 0.372 3.628 9 O -0.426 6.426 10 N -0.323 5.323 11 C -0.022 4.022 12 C -0.146 4.146 13 C -0.103 4.103 14 C -0.004 4.004 15 C -0.131 4.131 16 C -0.176 4.176 17 C 0.018 3.982 18 N -0.314 5.314 19 C -0.380 4.380 20 H 0.080 0.920 21 C -0.189 4.189 22 N -0.546 5.546 23 Si 0.729 3.271 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.062 3.938 28 C -0.145 4.145 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.154 0.846 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.121 0.879 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.034 0.966 48 H 0.063 0.937 49 H 0.118 0.882 50 H 0.032 0.968 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.407 3.394 12.185 16.380 hybrid contribution -0.684 -0.167 -0.926 1.164 sum -11.091 3.227 11.259 16.131 Atomic orbital electron populations 1.20816 0.89832 1.03354 1.03082 1.20295 0.96948 0.92556 0.95866 1.22034 0.94861 0.98724 1.02098 1.21405 0.91108 0.94083 0.94238 1.20755 1.00395 0.91342 1.03758 1.67718 1.40071 0.97494 1.11013 1.21087 0.91426 0.92118 0.99343 1.17456 0.80797 0.87315 0.77202 1.90747 1.69389 1.30484 1.51983 1.48638 1.04343 1.10293 1.69075 1.22649 0.90357 0.89422 0.99753 1.22670 0.95993 0.95655 1.00314 1.21966 0.92568 0.96349 0.99409 1.22431 0.89198 0.87599 1.01173 1.21348 0.95122 1.00205 0.96416 1.22098 0.95973 1.00871 0.98614 1.20915 0.92006 0.96048 0.89192 1.43982 1.01401 1.75403 1.10579 1.19153 1.20038 1.15753 0.83033 0.91958 1.25288 0.98660 0.96945 0.97959 1.69901 1.21885 1.33598 1.29251 0.86272 0.77945 0.77826 0.85102 1.20258 1.21761 1.21561 1.20927 0.87871 0.94088 0.90922 1.21935 0.93736 0.99410 0.99446 0.90338 0.90855 0.90950 0.84557 0.89801 0.90806 0.89997 0.91597 0.90403 0.90227 0.90410 0.92532 0.87885 0.92630 0.93733 0.93362 0.92153 0.93088 0.96628 0.93680 0.88166 0.96761 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.06 36.01 0.36 -0.47 16 2 C -0.05 -0.53 5.91 -104.35 -0.62 -1.15 16 3 C -0.16 -1.66 9.45 -39.32 -0.37 -2.03 16 4 C 0.13 1.66 6.78 -82.61 -0.56 1.10 16 5 C -0.11 -1.05 10.17 36.01 0.37 -0.69 16 6 N -0.45 -7.02 6.72 -6.06 -0.04 -7.07 16 7 C 0.10 1.61 6.73 -83.00 -0.56 1.05 16 8 C 0.59 10.84 7.87 -12.18 -0.10 10.75 16 9 O -0.55 -11.15 16.53 5.35 0.09 -11.06 16 10 N -0.59 -10.60 3.30 -170.84 -0.56 -11.16 16 11 C 0.10 1.66 7.11 -2.06 -0.01 1.64 16 12 C -0.11 -1.96 5.75 -25.03 -0.14 -2.11 16 13 C -0.10 -1.85 0.63 -154.05 -0.10 -1.95 16 14 C 0.12 2.07 5.26 -3.16 -0.02 2.05 16 15 C -0.09 -1.52 4.47 -26.93 -0.12 -1.64 16 16 C -0.14 -2.29 5.87 -26.58 -0.16 -2.45 16 17 C 0.14 2.96 6.50 -3.72 -0.02 2.94 16 18 N -0.59 -14.33 2.81 -172.57 -0.49 -14.82 16 19 C -0.25 -6.71 9.56 -15.06 -0.14 -6.85 16 20 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 21 C 0.01 0.28 5.32 -17.43 -0.09 0.18 16 22 N -0.90 -25.74 10.62 55.49 0.59 -25.15 16 23 Si 0.90 21.68 29.56 -169.99 -5.02 16.65 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.19 4.35 3.61 -3.93 -0.01 4.34 16 28 C -0.12 -1.70 9.34 -39.05 -0.36 -2.07 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.07 0.41 8.10 -51.92 -0.42 -0.01 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.31 7.81 -51.93 -0.41 0.90 16 38 H 0.08 1.70 7.74 -51.93 -0.40 1.30 16 39 H 0.08 1.33 5.89 -51.92 -0.31 1.03 16 40 H 0.06 0.91 7.68 -51.92 -0.40 0.51 16 41 H 0.10 1.96 5.65 -51.93 -0.29 1.66 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.03 6.19 -51.93 -0.32 0.71 16 46 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.10 2.71 5.80 -51.93 -0.30 2.41 16 50 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.14 1.88 7.65 -52.49 -0.40 1.48 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -31.38 395.35 -10.42 -41.80 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.28 Total: 2.19 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -2.66 Total: 2.66 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.50 Total: -58.20 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.38 -10.42 -41.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040271833.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.857 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds