Wall clock time and date at job start Wed Apr 1 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38620 * 120.75670 * 2 1 4 4 C 1.38557 * 119.34974 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.54676 * 180.02562 * 4 3 2 6 6 N 1.31516 * 120.90764 * 0.02562 * 4 3 2 7 7 C 1.32716 * 121.64295 * 0.02562 * 6 4 3 8 8 C 1.48174 * 119.72729 * 179.97438 * 7 6 4 9 9 O 1.21515 * 120.00108 * 184.85751 * 8 7 6 10 10 N 1.34776 * 119.99637 * 4.85666 * 8 7 6 11 11 C 1.48154 * 127.02203 * 174.38273 * 10 8 7 12 12 C 1.55036 * 103.31496 * 141.00121 * 11 10 8 13 13 C 1.54189 * 102.72194 * 37.00747 * 12 11 10 14 14 C 1.47604 * 127.02701 * 354.40756 * 10 8 7 15 15 C 1.52498 * 110.00238 * 97.45889 * 13 12 11 16 16 C 1.53120 * 109.60475 * 61.57164 * 15 13 12 17 17 C 1.53181 * 109.29483 * 60.50469 * 16 15 13 18 18 N 1.46928 * 108.89547 * 304.93869 * 17 16 15 19 19 C 1.36940 * 120.67966 * 234.03987 * 18 17 16 20 20 H 1.08004 * 119.99978 * 35.21395 * 19 18 17 21 21 C 1.38812 * 120.00196 * 215.21820 * 19 18 17 22 22 N 1.31624 * 119.99564 * 355.62820 * 21 19 18 23 23 Si 1.86795 * 120.00308 * 175.62204 * 21 19 18 24 24 H 1.48504 * 109.47105 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47049 * 119.99899 * 23 21 19 26 26 H 1.48500 * 109.47309 * 240.00238 * 23 21 19 27 27 C 1.47035 * 118.63929 * 54.01081 * 18 17 16 28 28 C 1.38592 * 120.74976 * 180.26164 * 2 1 3 29 29 H 1.09003 * 109.47307 * 89.99684 * 1 2 3 30 30 H 1.09003 * 109.47318 * 210.00042 * 1 2 3 31 31 H 1.09008 * 109.46950 * 329.99679 * 1 2 3 32 32 H 1.07995 * 120.32417 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47230 * 269.97625 * 5 4 3 34 34 H 1.09001 * 109.47353 * 29.97500 * 5 4 3 35 35 H 1.09001 * 109.46952 * 149.98070 * 5 4 3 36 36 H 1.09000 * 110.65195 * 259.45925 * 11 10 8 37 37 H 1.09007 * 110.65448 * 22.38201 * 11 10 8 38 38 H 1.08993 * 110.76028 * 278.69711 * 12 11 10 39 39 H 1.09009 * 110.75975 * 155.31266 * 12 11 10 40 40 H 1.09008 * 109.97507 * 85.95434 * 14 10 8 41 41 H 1.09004 * 109.97533 * 324.68442 * 14 10 8 42 42 H 1.09003 * 109.44344 * 181.61201 * 15 13 12 43 43 H 1.08994 * 109.45182 * 301.52454 * 15 13 12 44 44 H 1.09006 * 109.50190 * 180.45287 * 16 15 13 45 45 H 1.09000 * 109.50057 * 300.55718 * 16 15 13 46 46 H 1.09000 * 109.57193 * 185.10679 * 17 16 15 47 47 H 1.09003 * 109.56401 * 64.76207 * 17 16 15 48 48 H 0.97003 * 119.99840 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.57904 * 187.41952 * 27 18 17 50 50 H 1.08999 * 109.58312 * 67.00891 * 27 18 17 51 51 H 1.07994 * 120.47549 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1912 0.0000 4 6 3.6010 1.1572 -0.0005 5 6 4.3762 2.4496 0.0000 6 7 4.2487 0.0126 -0.0016 7 6 3.6082 -1.1498 -0.0026 8 6 4.3805 -2.4143 -0.0043 9 8 3.8024 -3.4793 -0.0944 10 7 5.7243 -2.3832 0.0940 11 6 6.6364 -3.5435 0.2234 12 6 7.8465 -3.1468 -0.6610 13 6 7.9683 -1.6305 -0.4093 14 6 6.5880 -1.1862 0.0954 15 6 9.0330 -1.3613 0.6488 16 6 10.3906 -1.8653 0.1514 17 6 10.7651 -1.1240 -1.1358 18 7 9.6780 -1.2849 -2.1110 19 6 9.9312 -1.7717 -3.3656 20 1 10.6873 -2.5296 -3.5084 21 6 9.2162 -1.2910 -4.4540 22 7 8.2367 -0.4312 -4.2701 23 14 9.6441 -1.8642 -6.1796 24 1 10.7759 -2.8235 -6.1161 25 1 8.4638 -2.5298 -6.7870 26 1 10.0334 -0.6944 -7.0075 27 6 8.3125 -0.9131 -1.7119 28 6 2.2156 -1.1911 -0.0054 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6937 2.1365 -0.0004 33 1 4.5631 2.7617 -1.0275 34 1 3.7999 3.2188 0.5142 35 1 5.3263 2.3032 0.5137 36 1 6.9452 -3.6761 1.2603 37 1 6.1620 -4.4495 -0.1540 38 1 7.6396 -3.3487 -1.7119 39 1 8.7485 -3.6660 -0.3369 40 1 6.6718 -0.7887 1.1070 41 1 6.1747 -0.4281 -0.5698 42 1 9.0915 -0.2898 0.8402 43 1 8.7685 -1.8801 1.5701 44 1 11.1488 -1.6793 0.9122 45 1 10.3305 -2.9350 -0.0491 46 1 11.6858 -1.5418 -1.5431 47 1 10.9074 -0.0652 -0.9190 48 1 7.7368 -0.0955 -5.0306 49 1 7.6103 -1.2119 -2.4903 50 1 8.2568 0.1649 -1.5610 51 1 1.6958 -2.1376 -0.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040271833.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:57 Heat of formation + Delta-G solvation = 6.906640 kcal Electronic energy + Delta-G solvation = -31473.807385 eV Core-core repulsion = 27565.716151 eV Total energy + Delta-G solvation = -3908.091234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.93683 -40.90138 -39.57883 -37.28404 -35.26915 -34.79303 -33.85535 -32.61526 -31.62035 -30.70455 -29.03289 -28.33035 -27.33174 -26.94030 -25.68026 -23.98849 -23.32526 -22.37689 -22.08433 -20.64622 -19.51358 -18.70496 -18.28652 -17.43858 -17.08792 -17.03956 -16.84398 -16.48093 -15.87965 -15.69408 -15.28460 -15.15568 -14.89605 -14.73231 -14.50548 -14.20371 -14.13858 -13.92520 -13.76927 -13.73799 -13.45063 -13.38987 -13.16453 -13.06561 -13.02231 -12.85331 -12.74373 -12.57646 -12.48719 -12.18652 -12.05963 -11.78021 -11.65634 -11.52595 -11.22388 -11.11044 -11.01977 -10.51878 -10.50310 -10.29027 -10.07590 -9.66279 -8.49111 -7.83406 -5.38078 -0.39434 0.19173 1.42631 1.44591 1.53929 1.60250 1.86103 2.49200 2.76038 2.97942 3.30291 3.49041 3.59607 3.65902 3.85431 3.96800 3.99785 4.00501 4.02241 4.26829 4.29655 4.36090 4.43110 4.49850 4.50937 4.62946 4.70853 4.72578 4.74405 4.77837 4.80737 4.82647 4.94005 4.98078 5.01135 5.05133 5.07759 5.14891 5.20379 5.25858 5.26446 5.30263 5.31142 5.40463 5.46793 5.59874 5.64773 5.70110 5.76568 5.90211 6.41926 6.49080 6.70668 7.03218 7.21400 7.91347 8.44557 9.19013 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011114 B = 0.003634 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.767094 B = 7702.338718 C = 8355.712925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.045 4.045 3 C -0.142 4.142 4 C 0.114 3.886 5 C -0.102 4.102 6 N -0.477 5.477 7 C 0.065 3.935 8 C 0.576 3.424 9 O -0.578 6.578 10 N -0.599 5.599 11 C 0.105 3.895 12 C -0.100 4.100 13 C -0.093 4.093 14 C 0.132 3.868 15 C -0.088 4.088 16 C -0.125 4.125 17 C 0.139 3.861 18 N -0.608 5.608 19 C -0.254 4.254 20 H 0.063 0.937 21 C -0.044 4.044 22 N -0.931 5.931 23 Si 0.958 3.042 24 H -0.265 1.265 25 H -0.297 1.297 26 H -0.290 1.290 27 C 0.204 3.796 28 C -0.133 4.133 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.178 0.822 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.050 0.950 47 H 0.013 0.987 48 H 0.246 0.754 49 H 0.055 0.945 50 H -0.012 1.012 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.351 4.785 14.546 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.162 4.162 4 C -0.026 4.026 5 C -0.159 4.159 6 N -0.191 5.191 7 C -0.072 4.072 8 C 0.365 3.635 9 O -0.459 6.459 10 N -0.330 5.330 11 C -0.017 4.017 12 C -0.138 4.138 13 C -0.096 4.096 14 C 0.009 3.991 15 C -0.126 4.126 16 C -0.164 4.164 17 C 0.013 3.987 18 N -0.332 5.332 19 C -0.385 4.385 20 H 0.081 0.919 21 C -0.239 4.239 22 N -0.577 5.577 23 Si 0.787 3.213 24 H -0.189 1.189 25 H -0.225 1.225 26 H -0.217 1.217 27 C 0.078 3.922 28 C -0.154 4.154 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.195 0.805 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.031 0.969 48 H 0.055 0.945 49 H 0.073 0.927 50 H 0.006 0.994 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.878 4.259 14.370 18.520 hybrid contribution -0.544 -0.363 -1.618 1.745 sum -11.422 3.897 12.753 17.558 Atomic orbital electron populations 1.20914 0.86829 1.04932 1.04100 1.20737 0.98931 0.91507 0.94149 1.22483 0.94009 1.00299 0.99396 1.21964 0.92651 0.93918 0.94057 1.20825 1.00302 0.91034 1.03760 1.67612 1.41181 0.98124 1.12144 1.20901 0.92241 0.91572 1.02522 1.17963 0.81006 0.88071 0.76460 1.90701 1.69913 1.31745 1.53511 1.48756 1.04545 1.10715 1.68938 1.22699 0.89202 0.88783 1.01002 1.22514 0.97466 0.95654 0.98145 1.21780 0.94171 0.95787 0.97821 1.22262 0.88198 0.87037 1.01624 1.21336 0.93765 1.00975 0.96485 1.21983 0.97099 1.00075 0.97242 1.21102 0.90884 0.96549 0.90133 1.44217 1.02743 1.75422 1.10786 1.19429 1.19287 1.15382 0.84355 0.91936 1.25963 0.98933 0.97728 1.01297 1.70112 1.22898 1.35197 1.29474 0.85334 0.77595 0.77378 0.81004 1.18898 1.22484 1.21664 1.20513 0.86802 0.92809 0.92031 1.22074 0.92931 1.00735 0.99646 0.89390 0.90325 0.88404 0.80466 0.90323 0.87221 0.91078 0.88337 0.91135 0.94584 0.88811 0.90501 0.89937 0.92248 0.90463 0.89795 0.92174 0.93109 0.96864 0.94467 0.92719 0.99440 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.06 71.24 0.72 -0.57 16 2 C -0.05 -0.91 5.91 -19.69 -0.12 -1.03 16 3 C -0.14 -2.64 9.45 22.44 0.21 -2.43 16 4 C 0.11 2.79 6.78 42.68 0.29 3.08 16 5 C -0.10 -1.92 10.17 71.24 0.72 -1.19 16 6 N -0.48 -15.24 6.72 -173.07 -1.16 -16.40 16 7 C 0.06 2.18 6.73 41.91 0.28 2.46 16 8 C 0.58 22.28 7.87 86.88 0.68 22.97 16 9 O -0.58 -24.60 16.53 -3.76 -0.06 -24.66 16 10 N -0.60 -21.94 3.30 -812.71 -2.68 -24.61 16 11 C 0.10 3.43 7.11 86.76 0.62 4.05 16 12 C -0.10 -3.65 5.75 31.69 0.18 -3.47 16 13 C -0.09 -3.45 0.63 -51.88 -0.03 -3.48 16 14 C 0.13 4.65 5.26 86.35 0.45 5.10 16 15 C -0.09 -2.65 4.47 30.47 0.14 -2.51 16 16 C -0.13 -3.85 5.87 30.70 0.18 -3.67 16 17 C 0.14 5.56 6.50 86.36 0.56 6.12 16 18 N -0.61 -30.20 2.81 -699.88 -1.97 -32.17 16 19 C -0.25 -13.99 9.56 84.03 0.80 -13.18 16 20 H 0.06 3.38 7.83 -2.91 -0.02 3.36 16 21 C -0.04 -2.48 5.32 84.86 0.45 -2.03 16 22 N -0.93 -55.86 10.62 21.65 0.23 -55.63 16 23 Si 0.96 45.92 29.56 68.60 2.03 47.94 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 C 0.20 9.92 3.61 86.16 0.31 10.23 16 28 C -0.13 -3.66 9.34 22.61 0.21 -3.45 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 31 H 0.10 0.67 8.10 -2.38 -0.02 0.65 16 32 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.11 1.22 8.08 -2.39 -0.02 1.21 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.07 2.42 7.81 -2.38 -0.02 2.40 16 38 H 0.04 1.62 7.74 -2.39 -0.02 1.60 16 39 H 0.09 3.10 5.89 -2.38 -0.01 3.09 16 40 H 0.08 2.40 7.68 -2.38 -0.02 2.38 16 41 H 0.08 3.31 5.65 -2.39 -0.01 3.29 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.06 1.88 6.19 -2.39 -0.01 1.87 16 46 H 0.05 2.00 7.93 -2.39 -0.02 1.99 16 47 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 49 H 0.05 3.17 5.80 -2.38 -0.01 3.15 16 50 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 51 H 0.14 3.84 7.65 -2.91 -0.02 3.82 16 Total: -1.00 -73.58 395.35 3.97 -69.61 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.92 Total: 18.92 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 6.67 Total: 17.00 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -5.58 Total: -128.82 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.06 Total: -24.66 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -73.58 3.97 -69.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040271833.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.520 kcal (2) G-P(sol) polarization free energy of solvation -73.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds