Wall clock time and date at job start Wed Apr 1 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38627 * 120.32537 * 2 1 4 4 C 1.38587 * 118.49192 * 179.97438 * 3 2 1 5 5 C 1.39313 * 119.05586 * 359.97438 * 4 3 2 6 6 C 1.48176 * 119.72039 * 179.97438 * 5 4 3 7 7 O 1.21517 * 119.99719 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99930 * 180.02562 * 6 5 4 9 9 C 1.47543 * 126.98442 * 0.02562 * 8 6 5 10 10 C 1.54165 * 107.23081 * 154.81479 * 9 8 6 11 11 C 1.53924 * 104.87450 * 1.60150 * 10 9 8 12 12 C 1.48513 * 127.13007 * 179.81424 * 8 6 5 13 13 C 1.52221 * 110.61639 * 262.91263 * 11 10 9 14 14 C 1.53175 * 109.66238 * 177.37438 * 13 11 10 15 15 C 1.53189 * 109.26892 * 60.15439 * 14 13 11 16 16 N 1.46934 * 108.92496 * 304.75888 * 15 14 13 17 17 C 1.36941 * 120.70230 * 234.15447 * 16 15 14 18 18 H 1.07995 * 119.99803 * 152.58546 * 17 16 15 19 19 C 1.38818 * 119.99845 * 332.58998 * 17 16 15 20 20 N 1.31618 * 119.99725 * 159.32340 * 19 17 16 21 21 Si 1.86796 * 120.00099 * 339.32309 * 19 17 16 22 22 H 1.48501 * 109.47061 * 93.20811 * 21 19 17 23 23 H 1.48497 * 109.47146 * 213.20994 * 21 19 17 24 24 H 1.48503 * 109.47105 * 333.21108 * 21 19 17 25 25 C 1.47077 * 118.59561 * 54.17867 * 16 15 14 26 26 N 1.32712 * 120.55662 * 0.25683 * 5 4 3 27 27 C 1.31530 * 121.64024 * 359.48043 * 26 5 4 28 28 C 1.50699 * 119.54696 * 180.26905 * 27 26 5 29 29 H 1.09010 * 109.47102 * 90.00205 * 1 2 3 30 30 H 1.08999 * 109.47011 * 209.99857 * 1 2 3 31 31 H 1.08997 * 109.47133 * 329.99945 * 1 2 3 32 32 H 1.08001 * 120.75257 * 359.95061 * 3 2 1 33 33 H 1.08002 * 120.47150 * 180.02562 * 4 3 2 34 34 H 1.08996 * 109.91746 * 35.36295 * 9 8 6 35 35 H 1.09004 * 109.92027 * 274.26587 * 9 8 6 36 36 H 1.08992 * 110.35765 * 120.45236 * 10 9 8 37 37 H 1.09004 * 110.35484 * 242.75352 * 10 9 8 38 38 H 1.09007 * 110.52036 * 100.06035 * 12 8 6 39 39 H 1.09006 * 110.84204 * 337.07941 * 12 8 6 40 40 H 1.09001 * 109.43995 * 297.42851 * 13 11 10 41 41 H 1.08999 * 109.44110 * 57.35856 * 13 11 10 42 42 H 1.08995 * 109.50555 * 180.09087 * 14 13 11 43 43 H 1.08998 * 109.50406 * 300.17626 * 14 13 11 44 44 H 1.09006 * 109.56480 * 64.58845 * 15 14 13 45 45 H 1.08997 * 109.56297 * 184.80791 * 15 14 13 46 46 H 0.96998 * 119.99770 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.57760 * 187.77477 * 25 16 15 48 48 H 1.08999 * 109.58202 * 67.38062 * 25 16 15 49 49 H 1.09007 * 109.46688 * 270.25051 * 28 27 26 50 50 H 1.08998 * 109.47374 * 30.24737 * 28 27 26 51 51 H 1.08995 * 109.47053 * 150.25304 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1523 0.0005 5 6 4.2294 -0.0866 0.0016 6 6 5.7097 -0.1511 0.0016 7 8 6.3625 0.8738 0.0012 8 7 6.3320 -1.3466 0.0021 9 6 5.6965 -2.6781 0.0022 10 6 6.7026 -3.6643 -0.6238 11 6 7.9480 -2.8146 -0.9339 12 6 7.7962 -1.5950 -0.0016 13 6 7.9462 -2.3726 -2.3905 14 6 9.1587 -1.4759 -2.6586 15 6 10.4419 -2.2605 -2.3678 16 7 10.3826 -2.7789 -0.9943 17 6 11.3901 -2.5177 -0.1043 18 1 11.1815 -2.4918 0.9550 19 6 12.6793 -2.2860 -0.5638 20 7 13.5449 -1.6504 0.1972 21 14 13.1858 -2.8765 -2.2621 22 1 12.9780 -1.7854 -3.2478 23 1 14.6198 -3.2616 -2.2449 24 1 12.3620 -4.0517 -2.6436 25 6 9.2186 -3.5847 -0.5956 26 7 3.5218 -1.2093 -0.0030 27 6 2.2065 -1.1960 0.0014 28 6 1.4502 -2.4994 0.0020 29 1 -0.3634 0.0000 -1.0278 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6846 2.1419 -0.0008 33 1 4.1693 2.0651 0.0010 34 1 4.7826 -2.6534 -0.5913 35 1 5.4673 -2.9802 1.0242 36 1 6.9496 -4.4548 0.0848 37 1 6.2957 -4.0898 -1.5412 38 1 8.1460 -1.8328 1.0031 39 1 8.3344 -0.7355 -0.4016 40 1 7.9941 -3.2498 -3.0359 41 1 7.0318 -1.8175 -2.6001 42 1 9.1540 -1.1596 -3.7016 43 1 9.1130 -0.5994 -2.0123 44 1 10.5282 -3.0914 -3.0681 45 1 11.3042 -1.6023 -2.4745 46 1 14.4456 -1.4882 -0.1240 47 1 9.2559 -3.7744 0.4771 48 1 9.2270 -4.5311 -1.1363 49 1 1.2683 -2.8143 -1.0256 50 1 2.0373 -3.2601 0.5165 51 1 0.4979 -2.3666 0.5153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040296741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:48 Heat of formation + Delta-G solvation = 33.880757 kcal Electronic energy + Delta-G solvation = -31102.694542 eV Core-core repulsion = 27195.772993 eV Total energy + Delta-G solvation = -3906.921549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.02087 -39.90474 -38.25436 -36.01081 -34.28474 -33.36877 -32.87369 -31.43478 -30.80916 -29.00787 -28.78158 -27.92299 -25.83628 -25.27843 -23.73992 -22.85875 -22.20128 -21.92492 -20.84852 -19.76887 -18.23137 -17.56894 -16.75696 -16.53546 -15.91520 -15.72551 -15.32181 -15.24569 -15.08357 -14.39050 -14.13599 -14.06123 -13.70486 -13.69534 -13.45747 -13.30711 -13.27044 -13.07543 -12.89371 -12.64865 -12.50204 -12.40861 -12.18058 -12.06317 -11.78498 -11.65570 -11.51400 -11.37803 -10.93192 -10.75094 -10.46872 -10.40984 -10.14464 -10.05435 -9.96042 -9.75899 -9.57821 -9.44779 -9.34850 -9.10266 -8.55131 -8.39228 -6.91992 -5.89836 -3.25494 0.43310 0.92671 2.69954 3.02588 3.36928 3.52053 3.55213 3.66740 3.82616 4.29130 4.42219 4.48112 4.55033 4.57991 4.80580 4.91550 4.93033 5.04508 5.08571 5.15560 5.20692 5.23529 5.25366 5.30021 5.38226 5.47615 5.51088 5.59678 5.67468 5.69872 5.76519 5.79104 5.88675 5.98533 6.03058 6.05505 6.10913 6.21059 6.24324 6.27155 6.34504 6.43387 6.50112 6.58025 6.60605 6.66744 6.74115 6.83036 7.03915 7.49833 7.73075 8.00357 8.25071 8.37414 8.98249 9.77000 10.15022 11.26096 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023710 B = 0.002721 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.667232 B =10288.634857 C =10712.610512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C -0.081 4.081 4 C -0.115 4.115 5 C 0.089 3.911 6 C 0.581 3.419 7 O -0.536 6.536 8 N -0.598 5.598 9 C 0.105 3.895 10 C -0.127 4.127 11 C -0.086 4.086 12 C 0.124 3.876 13 C -0.090 4.090 14 C -0.139 4.139 15 C 0.126 3.874 16 N -0.605 5.605 17 C -0.257 4.257 18 H 0.085 0.915 19 C 0.023 3.977 20 N -0.908 5.908 21 Si 0.883 3.117 22 H -0.289 1.289 23 H -0.305 1.305 24 H -0.271 1.271 25 C 0.166 3.834 26 N -0.449 5.449 27 C 0.121 3.879 28 C -0.107 4.107 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.024 0.976 45 H 0.071 0.929 46 H 0.262 0.738 47 H 0.065 0.935 48 H 0.027 0.973 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.177 -0.806 -2.003 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.136 4.136 5 C -0.050 4.050 6 C 0.368 3.632 7 O -0.413 6.413 8 N -0.329 5.329 9 C -0.018 4.018 10 C -0.166 4.166 11 C -0.089 4.089 12 C 0.003 3.997 13 C -0.128 4.128 14 C -0.178 4.178 15 C 0.001 3.999 16 N -0.328 5.328 17 C -0.385 4.385 18 H 0.103 0.897 19 C -0.176 4.176 20 N -0.551 5.551 21 Si 0.714 3.286 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.196 1.196 25 C 0.039 3.961 26 N -0.161 5.161 27 C -0.020 4.020 28 C -0.164 4.164 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.045 0.955 49 H 0.098 0.902 50 H 0.098 0.902 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -28.189 -0.912 -1.947 28.271 hybrid contribution 0.028 0.586 -0.965 1.129 sum -28.161 -0.326 -2.912 28.313 Atomic orbital electron populations 1.20858 0.89997 1.03445 1.02873 1.20929 0.97683 0.93628 1.00090 1.21492 0.93575 0.98388 0.97211 1.22112 0.94862 0.99101 0.97514 1.21168 0.94168 0.89512 1.00133 1.17432 0.85424 0.82660 0.77694 1.90812 1.65777 1.33320 1.51355 1.48771 1.08881 1.05276 1.70013 1.22387 0.97067 0.81112 1.01225 1.22564 0.95181 0.97725 1.01137 1.21618 0.96150 0.95428 0.95660 1.22623 0.78383 0.98941 0.99736 1.21222 0.97753 0.99089 0.94717 1.22103 0.96289 0.99345 1.00055 1.21321 0.96308 0.95641 0.86670 1.44370 1.20991 1.58164 1.09284 1.18884 0.86201 1.43350 0.90099 0.89715 1.25266 0.95815 0.99154 0.97317 1.69843 1.06016 1.41331 1.37911 0.86940 0.76625 0.79590 0.85441 1.21729 1.23328 1.19592 1.20785 0.84718 0.91719 0.98873 1.67660 1.07549 1.29943 1.10932 1.21241 0.89437 0.95257 0.96019 1.20799 0.99299 0.92953 1.03318 0.90542 0.90549 0.91164 0.84171 0.83405 0.88369 0.92087 0.90498 0.90942 0.90741 0.88877 0.92430 0.93211 0.92910 0.91444 0.95842 0.91105 0.92834 0.91651 0.95485 0.90206 0.90175 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 9.62 36.00 0.35 -0.17 16 2 C -0.12 -0.96 5.91 -104.36 -0.62 -1.58 16 3 C -0.08 -0.69 9.85 -39.31 -0.39 -1.08 16 4 C -0.12 -1.33 9.63 -39.05 -0.38 -1.71 16 5 C 0.09 1.22 6.73 -83.01 -0.56 0.66 16 6 C 0.58 9.84 7.89 -12.18 -0.10 9.74 16 7 O -0.54 -10.77 16.56 5.35 0.09 -10.69 16 8 N -0.60 -9.56 3.25 -170.69 -0.55 -10.12 16 9 C 0.11 1.35 6.06 -2.86 -0.02 1.33 16 10 C -0.13 -1.61 6.08 -25.64 -0.16 -1.76 16 11 C -0.09 -1.39 0.58 -154.08 -0.09 -1.48 16 12 C 0.12 2.22 5.72 -2.27 -0.01 2.21 16 13 C -0.09 -1.47 4.58 -27.04 -0.12 -1.60 16 14 C -0.14 -2.62 5.90 -26.54 -0.16 -2.77 16 15 C 0.13 2.80 4.19 -3.71 -0.02 2.79 16 16 N -0.60 -14.24 2.63 -172.68 -0.45 -14.69 16 17 C -0.26 -7.16 10.05 -15.06 -0.15 -7.31 16 18 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 19 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 20 N -0.91 -28.21 13.97 55.49 0.78 -27.43 16 21 Si 0.88 22.74 24.36 -169.99 -4.14 18.60 16 22 H -0.29 -7.27 6.63 56.52 0.37 -6.89 16 23 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 24 H -0.27 -6.81 6.63 56.52 0.37 -6.44 16 25 C 0.17 3.15 5.09 -4.05 -0.02 3.13 16 26 N -0.45 -5.38 6.62 -6.06 -0.04 -5.42 16 27 C 0.12 1.12 6.78 -82.60 -0.56 0.56 16 28 C -0.11 -0.64 9.77 36.01 0.35 -0.28 16 29 H 0.08 0.29 8.14 -51.92 -0.42 -0.14 16 30 H 0.08 0.26 5.95 -51.93 -0.31 -0.05 16 31 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 32 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.15 1.69 7.64 -52.49 -0.40 1.29 16 34 H 0.10 1.20 5.88 -51.93 -0.31 0.90 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.89 7.82 -51.93 -0.41 0.48 16 37 H 0.07 0.82 7.84 -51.93 -0.41 0.42 16 38 H 0.07 1.38 7.91 -51.92 -0.41 0.97 16 39 H 0.09 1.95 5.77 -51.93 -0.30 1.65 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.38 6.26 -51.93 -0.32 1.06 16 44 H 0.02 0.52 7.11 -51.93 -0.37 0.15 16 45 H 0.07 1.74 4.46 -51.93 -0.23 1.51 16 46 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 47 H 0.07 1.24 7.78 -51.93 -0.40 0.84 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.08 0.31 5.93 -51.93 -0.31 0.00 16 LS Contribution 385.36 15.07 5.81 5.81 Total: -1.00 -33.80 385.36 -9.26 -43.06 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -8.01 Total: -0.38 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.73 Total: 1.27 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.27 Total: -57.67 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.14 Total: 18.60 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.80 -9.26 -43.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040296741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.937 kcal (2) G-P(sol) polarization free energy of solvation -33.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds