Wall clock time and date at job start Wed Apr 1 2020 02:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38605 * 120.32414 * 2 1 4 4 N 1.31501 * 120.90146 * 180.02562 * 3 2 1 5 5 C 1.32745 * 121.64324 * 359.67882 * 4 3 2 6 6 C 1.48162 * 119.72298 * 180.31568 * 5 4 3 7 7 O 1.21517 * 119.99899 * 180.26550 * 6 5 4 8 8 N 1.34775 * 119.99980 * 0.26428 * 6 5 4 9 9 C 1.47084 * 125.62621 * 0.02911 * 8 6 5 10 10 C 1.54467 * 107.30240 * 180.97855 * 9 8 6 11 11 C 1.54354 * 102.85463 * 21.47477 * 10 9 8 12 12 C 1.47582 * 125.62429 * 179.72074 * 8 6 5 13 13 C 1.52070 * 110.61117 * 83.54287 * 11 10 9 14 14 C 1.53191 * 109.68070 * 64.18530 * 13 11 10 15 15 C 1.53188 * 109.27745 * 59.96445 * 14 13 11 16 16 N 1.46938 * 108.92757 * 304.67923 * 15 14 13 17 17 C 1.36938 * 120.71087 * 234.27936 * 16 15 14 18 18 H 1.07997 * 120.00339 * 27.16359 * 17 16 15 19 19 C 1.38818 * 119.99938 * 207.16130 * 17 16 15 20 20 N 1.31620 * 120.00058 * 17.17236 * 19 17 16 21 21 Si 1.86797 * 119.99955 * 197.16845 * 19 17 16 22 22 H 1.48499 * 109.47140 * 89.99975 * 21 19 17 23 23 H 1.48497 * 109.47023 * 210.00040 * 21 19 17 24 24 H 1.48501 * 109.47294 * 330.00154 * 21 19 17 25 25 C 1.47108 * 118.57569 * 54.26203 * 16 15 14 26 26 C 1.39272 * 120.55340 * 0.58004 * 5 4 3 27 27 C 1.38589 * 120.32792 * 180.02562 * 2 1 3 28 28 C 1.50697 * 120.75055 * 0.02562 * 27 2 1 29 29 H 1.09001 * 109.47094 * 269.97766 * 1 2 3 30 30 H 1.09000 * 109.47083 * 29.98054 * 1 2 3 31 31 H 1.09001 * 109.47013 * 149.97899 * 1 2 3 32 32 H 1.08002 * 119.54822 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.87550 * 300.40235 * 9 8 6 34 34 H 1.08997 * 109.87988 * 61.40570 * 9 8 6 35 35 H 1.08998 * 110.73970 * 139.81873 * 10 9 8 36 36 H 1.09000 * 110.73732 * 263.13367 * 10 9 8 37 37 H 1.08995 * 110.37584 * 275.54246 * 12 8 6 38 38 H 1.09000 * 110.37928 * 37.90012 * 12 8 6 39 39 H 1.09001 * 109.43678 * 184.24998 * 13 11 10 40 40 H 1.08999 * 109.43760 * 304.17015 * 13 11 10 41 41 H 1.09001 * 109.50523 * 179.90683 * 14 13 11 42 42 H 1.08997 * 109.50464 * 299.98250 * 14 13 11 43 43 H 1.09000 * 109.56124 * 64.51215 * 15 14 13 44 44 H 1.09004 * 109.56191 * 184.73453 * 15 14 13 45 45 H 0.96996 * 119.99847 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.57621 * 187.93890 * 25 16 15 47 47 H 1.08990 * 109.58052 * 67.55137 * 25 16 15 48 48 H 1.07995 * 120.47131 * 179.72926 * 26 5 4 49 49 H 1.08999 * 109.47128 * 269.97475 * 28 27 2 50 50 H 1.08992 * 109.47768 * 29.97652 * 28 27 2 51 51 H 1.09004 * 109.46682 * 149.97495 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2097 -0.0005 5 6 4.2295 0.0867 0.0053 6 6 5.7097 0.1512 0.0116 7 8 6.3626 -0.8736 0.0120 8 7 6.3320 1.3467 0.0167 9 6 5.6672 2.6587 0.0174 10 6 6.7749 3.7351 -0.0011 11 6 7.9907 2.9671 -0.5620 12 6 7.7930 1.5552 0.0291 13 6 7.9473 2.9325 -2.0817 14 6 8.0757 4.3556 -2.6340 15 6 9.4068 4.9584 -2.1742 16 7 9.4816 4.8863 -0.7085 17 6 9.7251 6.0099 0.0354 18 1 9.4401 6.9804 -0.3430 19 6 10.3384 5.9014 1.2761 20 7 10.9848 4.8006 1.5967 21 14 10.2464 7.3179 2.4904 22 1 9.0444 7.1578 3.3475 23 1 11.4639 7.3207 3.3407 24 1 10.1579 8.6011 1.7483 25 6 9.2890 3.5813 -0.0575 26 6 3.5924 -1.1518 0.0000 27 6 2.2068 -1.1962 -0.0005 28 6 1.4780 -2.5153 -0.0017 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6647 2.1305 0.0004 33 1 5.0402 2.7569 -0.8688 34 1 5.0588 2.7654 0.9154 35 1 6.5015 4.5591 -0.6601 36 1 6.9785 4.0968 1.0068 37 1 8.1740 1.5112 1.0493 38 1 8.2880 0.8106 -0.5944 39 1 8.7708 2.3232 -2.4543 40 1 7.0007 2.5016 -2.4079 41 1 8.0459 4.3273 -3.7233 42 1 7.2519 4.9655 -2.2633 43 1 10.2322 4.3954 -2.6099 44 1 9.4659 5.9989 -2.4936 45 1 11.4129 4.7247 2.4637 46 1 9.2333 3.7166 1.0227 47 1 10.1233 2.9241 -0.3025 48 1 4.1695 -2.0646 0.0004 49 1 1.3023 -2.8342 1.0257 50 1 0.5234 -2.4026 -0.5154 51 1 2.0814 -3.2632 -0.5162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040305785.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:58 Heat of formation + Delta-G solvation = 22.514934 kcal Electronic energy + Delta-G solvation = -30870.533997 eV Core-core repulsion = 26963.119590 eV Total energy + Delta-G solvation = -3907.414408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.94696 -39.76587 -38.17133 -35.76997 -34.87885 -32.96667 -32.66664 -31.28599 -29.92773 -29.16689 -28.79407 -27.64378 -25.54278 -25.28396 -23.28356 -23.02827 -22.25561 -21.80930 -20.60450 -19.38317 -18.15240 -17.42124 -16.70015 -16.48987 -15.80223 -15.66194 -15.38352 -14.94076 -14.76780 -14.53172 -14.10947 -13.99784 -13.54913 -13.35374 -13.29115 -13.22772 -13.10394 -13.01521 -12.80775 -12.62387 -12.40970 -12.34314 -12.28669 -11.91648 -11.78426 -11.67429 -11.10121 -10.95996 -10.71941 -10.47110 -10.35413 -10.27061 -10.14359 -9.97142 -9.75922 -9.72417 -9.51899 -9.44386 -9.36662 -9.18637 -8.45453 -8.29346 -6.65246 -5.77208 -3.18312 0.48486 0.97269 2.73999 3.10342 3.38760 3.46099 3.46977 3.72991 4.02191 4.32434 4.41297 4.50557 4.53326 4.56493 4.88786 5.04704 5.07677 5.11870 5.15211 5.21470 5.27841 5.36774 5.40232 5.47074 5.57068 5.58557 5.61826 5.70136 5.70806 5.74224 5.86061 5.98286 6.05674 6.09568 6.15650 6.26697 6.28926 6.37535 6.43390 6.48035 6.53644 6.59335 6.75241 6.82184 6.86676 6.96298 7.05619 7.35662 7.56731 7.63980 7.75428 7.81362 8.27697 8.45554 9.22429 9.86242 10.43711 11.31433 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.002685 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.151104 B =10425.203639 C =10696.478405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.124 4.124 3 C 0.099 3.901 4 N -0.450 5.450 5 C 0.084 3.916 6 C 0.577 3.423 7 O -0.545 6.545 8 N -0.590 5.590 9 C 0.118 3.882 10 C -0.113 4.113 11 C -0.091 4.091 12 C 0.116 3.884 13 C -0.091 4.091 14 C -0.134 4.134 15 C 0.144 3.856 16 N -0.588 5.588 17 C -0.248 4.248 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.900 3.100 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.280 1.280 25 C 0.190 3.810 26 C -0.110 4.110 27 C -0.054 4.054 28 C -0.118 4.118 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.161 0.839 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.052 0.948 45 H 0.254 0.746 46 H 0.091 0.909 47 H 0.020 0.980 48 H 0.146 0.854 49 H 0.078 0.922 50 H 0.075 0.925 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.442 -10.568 -4.395 24.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.126 4.126 3 C -0.061 4.061 4 N -0.161 5.161 5 C -0.053 4.053 6 C 0.364 3.636 7 O -0.423 6.423 8 N -0.320 5.320 9 C -0.004 4.004 10 C -0.151 4.151 11 C -0.093 4.093 12 C -0.006 4.006 13 C -0.129 4.129 14 C -0.173 4.173 15 C 0.018 3.982 16 N -0.311 5.311 17 C -0.377 4.377 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.205 1.205 25 C 0.063 3.937 26 C -0.131 4.131 27 C -0.062 4.062 28 C -0.174 4.174 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.109 0.891 47 H 0.038 0.962 48 H 0.164 0.836 49 H 0.097 0.903 50 H 0.094 0.906 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.510 -10.384 -4.250 23.378 hybrid contribution -0.475 -0.043 0.727 0.869 sum -20.985 -10.427 -3.523 23.696 Atomic orbital electron populations 1.20814 0.90045 1.03395 1.02834 1.21015 0.97680 0.93697 1.00188 1.22763 0.89565 0.97567 0.96236 1.67892 1.08200 1.29926 1.10068 1.21127 0.94283 0.89521 1.00404 1.17501 0.85590 0.82767 0.77791 1.90768 1.65948 1.33526 1.52075 1.48446 1.08365 1.05718 1.69519 1.22218 0.95073 0.81145 1.01980 1.22628 0.93330 0.96642 1.02469 1.21878 0.99493 0.92625 0.95306 1.22370 0.79063 0.97665 1.01493 1.21163 1.00171 0.97089 0.94448 1.22073 1.00618 0.96327 0.98298 1.20905 0.93183 0.98094 0.86020 1.44005 1.82431 1.05241 0.99393 1.19161 1.32319 0.86764 0.99487 0.91666 1.25009 0.97378 0.97224 1.00035 1.70024 1.35590 1.27343 1.21754 0.86326 0.77086 0.82111 0.81486 1.21479 1.21855 1.20508 1.20549 0.88943 0.85326 0.98833 1.21986 0.94091 0.99088 0.97942 1.20177 0.93219 0.95818 0.97002 1.20872 1.00384 0.93065 1.03082 0.90573 0.90925 0.90876 0.82193 0.91222 0.91411 0.89942 0.90601 0.90877 0.90732 0.92699 0.93634 0.93297 0.92113 0.96575 0.92965 0.93633 0.89134 0.96228 0.83583 0.90331 0.90593 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 9.65 36.00 0.35 -0.22 16 2 C -0.12 -1.04 5.91 -104.36 -0.62 -1.66 16 3 C 0.10 0.98 10.86 -17.56 -0.19 0.79 16 4 N -0.45 -5.88 6.84 -9.80 -0.07 -5.95 16 5 C 0.08 1.21 6.72 -83.01 -0.56 0.65 16 6 C 0.58 9.93 7.84 -12.19 -0.10 9.83 16 7 O -0.54 -10.64 16.59 5.35 0.09 -10.56 16 8 N -0.59 -10.00 3.32 -171.62 -0.57 -10.56 16 9 C 0.12 1.83 5.04 -2.95 -0.01 1.82 16 10 C -0.11 -1.96 5.68 -25.25 -0.14 -2.10 16 11 C -0.09 -1.67 0.55 -153.97 -0.08 -1.76 16 12 C 0.12 2.09 5.83 -2.75 -0.02 2.08 16 13 C -0.09 -1.57 4.69 -27.11 -0.13 -1.70 16 14 C -0.13 -2.30 5.91 -26.54 -0.16 -2.45 16 15 C 0.14 2.97 6.49 -3.71 -0.02 2.95 16 16 N -0.59 -14.20 2.89 -172.75 -0.50 -14.70 16 17 C -0.25 -6.58 9.60 -15.06 -0.14 -6.73 16 18 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 19 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 20 N -0.90 -25.76 11.17 55.49 0.62 -25.14 16 21 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.19 4.36 3.96 -4.10 -0.02 4.34 16 26 C -0.11 -1.33 9.34 -39.05 -0.36 -1.69 16 27 C -0.05 -0.50 5.91 -104.35 -0.62 -1.12 16 28 C -0.12 -0.70 9.67 36.00 0.35 -0.35 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.07 0.29 6.06 -51.93 -0.31 -0.02 16 32 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.07 1.04 7.41 -51.93 -0.38 0.65 16 34 H 0.07 1.03 7.53 -51.93 -0.39 0.64 16 35 H 0.08 1.42 6.09 -51.93 -0.32 1.11 16 36 H 0.08 1.44 7.87 -51.93 -0.41 1.03 16 37 H 0.07 1.37 8.01 -51.93 -0.42 0.95 16 38 H 0.07 1.36 7.95 -51.93 -0.41 0.95 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.75 7.83 -51.93 -0.41 0.34 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.04 6.31 -51.93 -0.33 0.72 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 1.05 7.94 -51.93 -0.41 0.64 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.09 2.33 5.90 -51.93 -0.31 2.03 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.15 1.71 7.64 -52.49 -0.40 1.31 16 49 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 0.33 6.07 -51.93 -0.32 0.02 16 51 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 LS Contribution 392.18 15.07 5.91 5.91 Total: -1.00 -31.24 392.18 -10.27 -41.50 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -8.16 Total: 0.44 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.56 Total: 2.65 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.52 Total: -56.35 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.24 -10.27 -41.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040305785.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.019 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds