Wall clock time and date at job start Wed Apr 1 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38225 * 120.41311 * 2 1 4 4 N 1.31858 * 120.75495 * 180.23666 * 3 2 1 5 5 C 1.31881 * 121.73075 * 359.47806 * 4 3 2 6 6 C 1.38177 * 120.76161 * 0.51901 * 5 4 3 7 7 C 1.50709 * 120.41936 * 179.72490 * 6 5 4 8 8 C 1.50700 * 109.46940 * 270.02665 * 7 6 5 9 9 O 1.21281 * 120.00209 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00034 * 179.97438 * 8 7 6 11 11 C 1.47088 * 125.62655 * 0.02775 * 10 8 7 12 12 C 1.54469 * 107.30667 * 180.97465 * 11 10 8 13 13 C 1.54346 * 102.85115 * 21.47882 * 12 11 10 14 14 C 1.47581 * 125.63126 * 179.71328 * 10 8 7 15 15 C 1.52068 * 110.61685 * 83.53878 * 13 12 11 16 16 C 1.53188 * 109.67992 * 64.18385 * 15 13 12 17 17 C 1.53187 * 109.27756 * 59.96406 * 16 15 13 18 18 N 1.46937 * 108.92802 * 304.68199 * 17 16 15 19 19 C 1.36943 * 120.71286 * 234.27769 * 18 17 16 20 20 H 1.07999 * 119.99616 * 27.16328 * 19 18 17 21 21 C 1.38809 * 120.00102 * 207.16297 * 19 18 17 22 22 N 1.31623 * 119.99919 * 17.17049 * 21 19 18 23 23 Si 1.86803 * 119.99907 * 197.16694 * 21 19 18 24 24 H 1.48499 * 109.47228 * 60.00092 * 23 21 19 25 25 H 1.48502 * 109.47051 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46856 * 300.00024 * 23 21 19 27 27 C 1.47109 * 118.57639 * 54.26172 * 18 17 16 28 28 C 1.38619 * 120.42078 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47594 * 89.99674 * 1 2 3 30 30 H 1.09003 * 109.46866 * 210.00327 * 1 2 3 31 31 H 1.09000 * 109.47030 * 329.99255 * 1 2 3 32 32 H 1.07990 * 119.62657 * 359.95806 * 3 2 1 33 33 H 1.08000 * 119.62048 * 180.26874 * 5 4 3 34 34 H 1.08993 * 109.46563 * 30.02519 * 7 6 5 35 35 H 1.08999 * 109.47127 * 150.02996 * 7 6 5 36 36 H 1.08998 * 109.87606 * 300.40474 * 11 10 8 37 37 H 1.09009 * 109.87686 * 61.54476 * 11 10 8 38 38 H 1.09005 * 110.73409 * 139.81431 * 12 11 10 39 39 H 1.08995 * 110.73385 * 263.13408 * 12 11 10 40 40 H 1.08995 * 110.37821 * 275.54919 * 14 10 8 41 41 H 1.09000 * 110.37260 * 37.90557 * 14 10 8 42 42 H 1.09002 * 109.44278 * 184.25230 * 15 13 12 43 43 H 1.09008 * 109.43457 * 304.16748 * 15 13 12 44 44 H 1.08996 * 109.50813 * 179.90431 * 16 15 13 45 45 H 1.09004 * 109.50365 * 299.98853 * 16 15 13 46 46 H 1.09002 * 109.56080 * 64.51366 * 17 16 15 47 47 H 1.09003 * 109.56539 * 184.73763 * 17 16 15 48 48 H 0.96997 * 119.99762 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.57536 * 187.94092 * 27 18 17 50 50 H 1.08992 * 109.57890 * 67.55183 * 27 18 17 51 51 H 1.08003 * 120.79204 * 0.03788 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5253 1.1999 -0.0047 5 6 4.2257 0.0824 0.0007 6 6 3.5948 -1.1469 0.0008 7 6 4.4027 -2.4192 0.0007 8 6 4.6724 -2.8429 -1.4201 9 8 4.2498 -2.1776 -2.3419 10 7 5.3832 -3.9611 -1.6665 11 6 5.9517 -4.8569 -0.6477 12 6 6.6989 -5.9849 -1.3929 13 6 6.9706 -5.3600 -2.7778 14 6 5.7142 -4.4925 -3.0030 15 6 8.2257 -4.5021 -2.7412 16 6 9.4441 -5.3827 -2.4467 17 6 9.5804 -6.4414 -3.5454 18 7 8.3209 -7.1918 -3.6432 19 6 8.3118 -8.5581 -3.5507 20 1 9.0845 -9.0667 -2.9934 21 6 7.3095 -9.2892 -4.1732 22 7 6.5762 -8.7324 -5.1139 23 14 7.0013 -11.0633 -3.6761 24 1 6.6440 -11.1188 -2.2358 25 1 5.8860 -11.6174 -4.4849 26 1 8.2292 -11.8640 -3.9128 27 6 7.0698 -6.4439 -3.8421 28 6 2.2090 -1.1954 0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6675 2.1276 -0.0007 33 1 5.3047 0.1287 0.0010 34 1 5.3486 -2.2488 0.5148 35 1 3.8461 -3.2031 0.5142 36 1 6.6481 -4.3053 -0.0162 37 1 5.1525 -5.2806 -0.0393 38 1 7.6343 -6.2270 -0.8885 39 1 6.0688 -6.8695 -1.4855 40 1 4.8934 -5.1001 -3.3838 41 1 5.9352 -3.6769 -3.6915 42 1 8.3577 -4.0109 -3.7053 43 1 8.1268 -3.7479 -1.9604 44 1 10.3421 -4.7654 -2.4227 45 1 9.3139 -5.8733 -1.4820 46 1 9.7898 -5.9541 -4.4977 47 1 10.3945 -7.1224 -3.2971 48 1 5.8755 -9.2432 -5.5486 49 1 6.2210 -7.1218 -3.7531 50 1 7.0715 -5.9858 -4.8311 51 1 1.6889 -2.1419 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040315383.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:01 Heat of formation + Delta-G solvation = 14.226542 kcal Electronic energy + Delta-G solvation = -30435.647050 eV Core-core repulsion = 26527.873231 eV Total energy + Delta-G solvation = -3907.773819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.71729 -40.02143 -38.37344 -35.82333 -33.82867 -33.72918 -33.05252 -31.44281 -30.00439 -29.36194 -28.46285 -27.51659 -25.41087 -25.35256 -23.42834 -22.92970 -22.13524 -21.64264 -20.61726 -19.15440 -18.08942 -17.15034 -17.01147 -16.92402 -16.62927 -15.87251 -15.38469 -14.83372 -14.53313 -14.38384 -14.21520 -14.07296 -13.62570 -13.45308 -13.33364 -13.23614 -13.17910 -12.96698 -12.83071 -12.68536 -12.55127 -12.40019 -12.28323 -12.05524 -11.75023 -11.61298 -11.20950 -11.02308 -10.76729 -10.60912 -10.45689 -10.23629 -10.11569 -10.00638 -9.84883 -9.70752 -9.62732 -9.55343 -9.46445 -8.96352 -8.51825 -8.45582 -6.71666 -5.83345 -3.24636 0.90467 1.11620 2.68401 3.08024 3.34262 3.41138 3.41178 3.65180 4.20166 4.44385 4.45258 4.50665 4.58526 4.76449 4.79358 4.87635 4.92322 5.00512 5.08259 5.22720 5.24030 5.29226 5.35600 5.42821 5.45746 5.49260 5.56105 5.59976 5.64695 5.72274 5.79620 5.99287 6.00204 6.02864 6.05916 6.13686 6.17608 6.30707 6.31634 6.41825 6.46067 6.53160 6.64022 6.71693 6.77337 6.86250 6.97777 7.27140 7.56172 7.65938 7.74954 7.81029 8.23588 8.39254 9.16162 9.79879 10.37231 11.25325 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019015 B = 0.002426 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.154953 B =11540.704800 C =12326.663137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.138 4.138 3 C 0.093 3.907 4 N -0.481 5.481 5 C 0.106 3.894 6 C -0.108 4.108 7 C -0.095 4.095 8 C 0.526 3.474 9 O -0.540 6.540 10 N -0.612 5.612 11 C 0.097 3.903 12 C -0.108 4.108 13 C -0.090 4.090 14 C 0.118 3.882 15 C -0.091 4.091 16 C -0.134 4.134 17 C 0.144 3.856 18 N -0.589 5.589 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.189 3.811 28 C -0.063 4.063 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.045 0.955 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.017 0.983 47 H 0.052 0.948 48 H 0.255 0.745 49 H 0.091 0.909 50 H 0.020 0.980 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 13.889 13.585 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C -0.064 4.064 4 N -0.188 5.188 5 C -0.050 4.050 6 C -0.110 4.110 7 C -0.135 4.135 8 C 0.314 3.686 9 O -0.417 6.417 10 N -0.346 5.346 11 C -0.026 4.026 12 C -0.146 4.146 13 C -0.093 4.093 14 C -0.004 4.004 15 C -0.129 4.129 16 C -0.173 4.173 17 C 0.017 3.983 18 N -0.311 5.311 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.730 3.270 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.063 3.937 28 C -0.089 4.089 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.034 0.966 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.109 0.891 50 H 0.038 0.962 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.806 15.019 12.986 20.988 hybrid contribution -0.605 -1.853 0.171 1.956 sum -7.410 13.166 13.156 20.033 Atomic orbital electron populations 1.20716 0.90209 1.02976 1.02738 1.20891 0.97562 0.94077 1.01435 1.22631 0.90002 0.97377 0.96397 1.67662 1.08358 1.31062 1.11738 1.22550 1.00138 0.87086 0.95272 1.20316 0.94295 0.95495 1.00939 1.20581 1.01647 0.95809 0.95469 1.20027 0.78052 0.79686 0.90842 1.90728 1.51363 1.53288 1.46366 1.48644 1.52878 1.24025 1.09075 1.22226 0.97137 0.91960 0.91250 1.22530 1.00516 0.96222 0.95283 1.21881 0.92733 0.96691 0.97983 1.22293 0.97299 0.97054 0.83751 1.21168 0.94474 0.96717 1.00526 1.22076 0.96424 0.98087 1.00761 1.20910 0.89917 0.92815 0.94630 1.44004 1.00011 1.02306 1.84759 1.19107 1.11468 0.81501 1.25882 0.91704 1.25012 1.00736 0.97661 0.96173 1.70015 1.23762 1.36782 1.24136 0.86409 0.77621 0.84985 0.78002 1.21060 1.21684 1.20923 1.20551 0.91140 0.90346 0.91679 1.21325 0.93278 0.98302 0.96025 0.90805 0.91354 0.91206 0.83001 0.83078 0.87704 0.87869 0.91858 0.91886 0.89749 0.90319 0.91170 0.90885 0.92637 0.93634 0.93212 0.92159 0.96552 0.92926 0.93534 0.89132 0.96204 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.04 36.01 0.36 -0.37 16 2 C -0.14 -1.35 5.90 -104.48 -0.62 -1.97 16 3 C 0.09 0.99 10.86 -17.55 -0.19 0.80 16 4 N -0.48 -6.10 10.36 -13.26 -0.14 -6.24 16 5 C 0.11 1.27 10.86 -17.55 -0.19 1.08 16 6 C -0.11 -1.22 4.39 -104.48 -0.46 -1.68 16 7 C -0.09 -0.94 5.05 -29.03 -0.15 -1.09 16 8 C 0.53 7.51 7.84 -10.99 -0.09 7.42 16 9 O -0.54 -9.93 16.30 5.56 0.09 -9.84 16 10 N -0.61 -8.68 3.32 -170.61 -0.57 -9.25 16 11 C 0.10 1.16 6.12 -2.95 -0.02 1.15 16 12 C -0.11 -1.64 5.68 -25.26 -0.14 -1.78 16 13 C -0.09 -1.54 0.55 -153.97 -0.08 -1.62 16 14 C 0.12 1.96 5.83 -2.75 -0.02 1.94 16 15 C -0.09 -1.45 4.68 -27.11 -0.13 -1.58 16 16 C -0.13 -2.15 5.91 -26.54 -0.16 -2.31 16 17 C 0.14 2.84 6.49 -3.71 -0.02 2.82 16 18 N -0.59 -13.70 2.89 -172.75 -0.50 -14.20 16 19 C -0.25 -6.45 9.60 -15.06 -0.14 -6.60 16 20 H 0.07 1.65 7.89 -52.49 -0.41 1.24 16 21 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 22 N -0.90 -25.17 11.17 55.49 0.62 -24.55 16 23 Si 0.90 20.85 29.59 -169.99 -5.03 15.82 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.19 4.16 3.96 -4.10 -0.02 4.15 16 28 C -0.06 -0.67 9.54 -39.28 -0.37 -1.05 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.08 1.28 6.09 -51.93 -0.32 0.97 16 39 H 0.08 1.34 7.87 -51.93 -0.41 0.93 16 40 H 0.07 1.23 8.01 -51.93 -0.42 0.82 16 41 H 0.07 1.27 7.95 -51.93 -0.41 0.86 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.04 0.66 7.83 -51.92 -0.41 0.26 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.96 6.31 -51.93 -0.33 0.63 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.02 7.94 -51.93 -0.41 0.61 16 48 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.09 2.24 5.90 -51.93 -0.31 1.93 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -31.65 400.81 -10.46 -42.11 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.46 Total: 0.80 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.52 Total: -0.69 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.58 Total: -54.23 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.65 -10.46 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040315383.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.337 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds