Wall clock time and date at job start Wed Apr 1 2020 01:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38218 * 119.62400 * 2 1 4 4 C 1.38632 * 119.16337 * 180.27360 * 3 2 1 5 5 C 1.38670 * 118.41916 * 359.44622 * 4 3 2 6 6 C 1.50700 * 120.41768 * 180.25665 * 5 4 3 7 7 C 1.50703 * 109.47144 * 270.34312 * 6 5 4 8 8 O 1.21279 * 119.99857 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99925 * 180.02562 * 7 6 5 10 10 C 1.47085 * 125.62795 * 0.02562 * 9 7 6 11 11 C 1.54459 * 107.29925 * 180.97831 * 10 9 7 12 12 C 1.54360 * 102.86407 * 21.47974 * 11 10 9 13 13 C 1.47574 * 125.62291 * 179.71865 * 9 7 6 14 14 C 1.52064 * 110.60518 * 207.23318 * 12 11 10 15 15 C 1.53194 * 109.67727 * 295.83082 * 14 12 11 16 16 C 1.53190 * 109.27287 * 300.04427 * 15 14 12 17 17 N 1.46938 * 108.94352 * 55.31071 * 16 15 14 18 18 C 1.36938 * 120.71519 * 125.76412 * 17 16 15 19 19 H 1.07999 * 120.00093 * 332.93447 * 18 17 16 20 20 C 1.38813 * 120.00010 * 152.92152 * 18 17 16 21 21 N 1.31618 * 120.00163 * 159.37440 * 20 18 17 22 22 Si 1.86801 * 120.00205 * 339.38307 * 20 18 17 23 23 H 1.48501 * 109.47252 * 92.32046 * 22 20 18 24 24 H 1.48500 * 109.47176 * 212.32549 * 22 20 18 25 25 H 1.48504 * 109.46937 * 332.32592 * 22 20 18 26 26 C 1.47103 * 118.57152 * 305.75088 * 17 16 15 27 27 C 1.38189 * 119.16046 * 0.59590 * 5 4 3 28 28 N 1.31858 * 119.61346 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47479 * 89.99430 * 1 2 3 30 30 H 1.08995 * 109.47698 * 210.00319 * 1 2 3 31 31 H 1.09007 * 109.46818 * 329.99953 * 1 2 3 32 32 H 1.08006 * 120.41764 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.78615 * 179.72220 * 4 3 2 34 34 H 1.09000 * 109.47271 * 30.34512 * 6 5 4 35 35 H 1.09005 * 109.46750 * 150.34397 * 6 5 4 36 36 H 1.09004 * 109.87695 * 300.40583 * 10 9 7 37 37 H 1.09002 * 109.87395 * 61.55504 * 10 9 7 38 38 H 1.09004 * 110.73481 * 139.82106 * 11 10 9 39 39 H 1.08994 * 110.73778 * 263.13412 * 11 10 9 40 40 H 1.09001 * 110.37847 * 275.54084 * 13 9 7 41 41 H 1.08994 * 110.38104 * 37.90195 * 13 9 7 42 42 H 1.08997 * 109.43754 * 55.89455 * 14 12 11 43 43 H 1.09000 * 109.43427 * 175.76534 * 14 12 11 44 44 H 1.09001 * 109.50018 * 180.10821 * 15 14 12 45 45 H 1.08993 * 109.53685 * 60.00547 * 15 14 12 46 46 H 1.09002 * 109.56178 * 295.47453 * 16 15 14 47 47 H 1.08996 * 109.55930 * 175.15041 * 16 15 14 48 48 H 0.97001 * 120.00257 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.57540 * 292.44802 * 26 17 16 50 50 H 1.09000 * 109.58241 * 172.06020 * 26 17 16 51 51 H 1.08005 * 119.61462 * 179.68359 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2015 0.0000 4 6 3.5765 1.1904 -0.0058 5 6 4.2266 -0.0344 0.0004 6 6 5.7323 -0.0991 0.0003 7 6 6.2341 -0.1195 -1.4205 8 8 5.4467 -0.0854 -2.3423 9 7 7.5580 -0.1766 -1.6668 10 6 8.6178 -0.2240 -0.6480 11 6 9.9702 -0.2565 -1.3934 12 6 9.6136 0.3250 -2.7780 13 6 8.1830 -0.2084 -3.0033 14 6 10.5594 -0.2088 -3.8424 15 6 11.9849 0.2723 -3.5540 16 6 12.0138 1.8039 -3.5658 17 7 11.0174 2.3072 -2.6103 18 6 11.3763 3.1861 -1.6234 19 1 12.3889 3.1922 -1.2478 20 6 10.4388 4.0694 -1.1060 21 7 10.6314 4.6159 0.0757 22 14 8.9035 4.4822 -2.0868 23 1 7.8066 3.5584 -1.7015 24 1 8.4955 5.8813 -1.8019 25 1 9.1881 4.3351 -3.5369 26 6 9.6261 1.8468 -2.7367 27 6 3.4765 -1.1950 -0.0005 28 7 2.1586 -1.1463 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5139 32 1 1.6509 2.1373 0.0004 33 1 4.1367 2.1137 -0.0104 34 1 6.1334 0.7741 0.5149 35 1 6.0570 -1.0043 0.5135 36 1 8.5641 0.6624 -0.0159 37 1 8.5077 -1.1223 -0.0404 38 1 10.7043 0.3715 -0.8885 39 1 10.3350 -1.2794 -1.4867 40 1 8.2114 -1.2290 -3.3849 41 1 7.6409 0.4402 -3.6914 42 1 10.5359 -1.2985 -3.8349 43 1 10.2453 0.1534 -4.8213 44 1 12.6600 -0.1103 -4.3195 45 1 12.3011 -0.0901 -2.5759 46 1 11.7754 2.1657 -4.5660 47 1 13.0052 2.1524 -3.2767 48 1 9.9761 5.2328 0.4375 49 1 9.1933 2.2405 -3.6564 50 1 9.0472 2.1937 -1.8808 51 1 3.9753 -2.1529 -0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040530636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:38 Heat of formation + Delta-G solvation = 19.455198 kcal Electronic energy + Delta-G solvation = -31009.045470 eV Core-core repulsion = 27101.498383 eV Total energy + Delta-G solvation = -3907.547088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.67624 -40.08901 -38.49637 -35.95785 -34.14727 -33.25977 -32.37667 -31.59449 -30.74023 -29.95375 -29.35708 -26.80323 -25.46843 -25.20370 -23.63364 -22.96882 -22.50963 -21.70429 -20.61714 -19.27883 -18.42799 -17.05777 -16.84828 -16.73950 -16.37677 -15.83744 -15.54939 -15.19035 -14.88607 -14.48417 -14.32832 -14.16623 -13.88526 -13.68276 -13.32516 -13.13104 -13.11547 -12.89631 -12.80804 -12.48596 -12.46363 -12.33642 -12.21159 -12.17186 -11.93290 -11.76189 -11.63193 -11.28526 -10.97975 -10.72882 -10.55771 -10.44055 -10.06194 -9.97888 -9.88643 -9.72822 -9.70989 -9.54474 -9.46693 -8.84733 -8.67902 -8.47981 -7.04005 -6.02578 -3.37655 0.98074 1.22704 2.72146 3.08973 3.26658 3.43922 3.46868 3.70875 4.16978 4.44965 4.51707 4.56865 4.60940 4.79634 4.79895 4.86229 4.90024 5.04661 5.10828 5.15695 5.30934 5.34662 5.37691 5.40193 5.40692 5.44009 5.47363 5.57464 5.59361 5.66368 5.78919 5.80086 5.84899 5.95868 6.01467 6.03818 6.07251 6.17208 6.18700 6.25568 6.29594 6.35452 6.52538 6.54174 6.60411 6.61966 6.66126 6.72627 6.89245 7.63991 7.88431 7.89741 8.25358 8.25658 8.86964 9.65204 10.03909 11.13034 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.003246 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.706068 B = 8623.646030 C = 9776.120577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.120 3.880 3 C -0.170 4.170 4 C -0.057 4.057 5 C -0.118 4.118 6 C -0.096 4.096 7 C 0.530 3.470 8 O -0.542 6.542 9 N -0.614 5.614 10 C 0.097 3.903 11 C -0.113 4.113 12 C -0.085 4.085 13 C 0.116 3.884 14 C -0.093 4.093 15 C -0.134 4.134 16 C 0.146 3.854 17 N -0.603 5.603 18 C -0.257 4.257 19 H 0.087 0.913 20 C 0.027 3.973 21 N -0.906 5.906 22 Si 0.875 3.125 23 H -0.290 1.290 24 H -0.303 1.303 25 H -0.272 1.272 26 C 0.144 3.856 27 C 0.118 3.882 28 N -0.486 5.486 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.021 0.979 47 H 0.062 0.938 48 H 0.262 0.738 49 H 0.023 0.977 50 H 0.075 0.925 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 -11.960 0.160 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.017 4.017 3 C -0.190 4.190 4 C -0.083 4.083 5 C -0.121 4.121 6 C -0.136 4.136 7 C 0.318 3.682 8 O -0.419 6.419 9 N -0.348 5.348 10 C -0.025 4.025 11 C -0.151 4.151 12 C -0.088 4.088 13 C -0.007 4.007 14 C -0.131 4.131 15 C -0.173 4.173 16 C 0.020 3.980 17 N -0.326 5.326 18 C -0.385 4.385 19 H 0.105 0.895 20 C -0.172 4.172 21 N -0.549 5.549 22 Si 0.706 3.294 23 H -0.218 1.218 24 H -0.231 1.231 25 H -0.197 1.197 26 C 0.018 3.982 27 C -0.039 4.039 28 N -0.195 5.195 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.039 0.961 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.041 0.959 50 H 0.093 0.907 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.901 -12.563 -0.171 16.634 hybrid contribution -0.308 1.238 -0.515 1.376 sum -11.209 -11.325 -0.687 15.949 Atomic orbital electron populations 1.20690 0.88966 1.03254 1.03018 1.21268 0.96954 0.88464 0.95052 1.21906 0.94676 0.99279 1.03152 1.21494 0.94494 0.97949 0.94355 1.20290 0.95234 0.94603 1.01949 1.20584 0.92061 1.05783 0.95190 1.20073 0.80683 0.76398 0.91047 1.90707 1.54437 1.50328 1.46435 1.48552 1.05003 1.72541 1.08667 1.22211 0.87448 1.01545 0.91314 1.22564 0.95975 1.01108 0.95410 1.21691 0.92709 0.98726 0.95648 1.22269 0.93113 1.00591 0.84696 1.21190 0.95319 0.99027 0.97602 1.22020 0.95366 0.98708 1.01213 1.20951 0.93588 0.91225 0.92256 1.44379 1.03559 1.50978 1.33719 1.18905 0.98718 1.10584 1.10285 0.89519 1.25230 0.97840 0.97458 0.96656 1.69825 1.36600 1.32978 1.15517 0.87095 0.83850 0.76582 0.81884 1.21776 1.23139 1.19685 1.21120 0.87658 0.89742 0.99705 1.22508 0.89209 0.97676 0.94540 1.67497 1.09690 1.29352 1.12975 0.90501 0.90586 0.90818 0.84841 0.84857 0.87500 0.87609 0.90743 0.91649 0.87816 0.91463 0.91575 0.90822 0.92645 0.92340 0.92638 0.91707 0.96086 0.91899 0.92792 0.95917 0.90701 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.17 36.01 0.37 -0.51 16 2 C 0.12 1.47 6.78 -82.59 -0.56 0.91 16 3 C -0.17 -2.01 9.74 -39.44 -0.38 -2.39 16 4 C -0.06 -0.74 9.86 -39.28 -0.39 -1.13 16 5 C -0.12 -1.56 4.39 -104.48 -0.46 -2.02 16 6 C -0.10 -1.18 5.05 -29.03 -0.15 -1.32 16 7 C 0.53 8.50 7.84 -10.98 -0.09 8.41 16 8 O -0.54 -10.60 16.30 5.56 0.09 -10.51 16 9 N -0.61 -9.51 3.32 -170.62 -0.57 -10.08 16 10 C 0.10 1.35 6.06 -2.96 -0.02 1.33 16 11 C -0.11 -1.66 4.88 -25.25 -0.12 -1.78 16 12 C -0.09 -1.37 0.56 -153.96 -0.09 -1.45 16 13 C 0.12 1.81 5.83 -2.75 -0.02 1.80 16 14 C -0.09 -1.31 4.65 -27.11 -0.13 -1.43 16 15 C -0.13 -1.95 5.92 -26.53 -0.16 -2.11 16 16 C 0.15 2.66 6.49 -3.71 -0.02 2.64 16 17 N -0.60 -13.33 2.38 -172.75 -0.41 -13.74 16 18 C -0.26 -6.73 10.04 -15.06 -0.15 -6.88 16 19 H 0.09 2.43 8.06 -52.49 -0.42 2.00 16 20 C 0.03 0.75 5.23 -17.43 -0.09 0.66 16 21 N -0.91 -26.53 13.97 55.49 0.78 -25.75 16 22 Si 0.88 22.17 24.32 -169.99 -4.13 18.03 16 23 H -0.29 -7.21 6.60 56.52 0.37 -6.84 16 24 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 25 H -0.27 -6.90 6.63 56.52 0.37 -6.53 16 26 C 0.14 2.97 2.86 -4.10 -0.01 2.96 16 27 C 0.12 1.55 10.86 -17.55 -0.19 1.36 16 28 N -0.49 -6.71 10.27 -9.47 -0.10 -6.80 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.48 8.08 -51.92 -0.42 0.06 16 32 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.11 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.11 0.99 8.09 -51.93 -0.42 0.57 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.81 7.67 -51.93 -0.40 1.41 16 39 H 0.07 0.83 7.98 -51.93 -0.41 0.42 16 40 H 0.07 0.92 8.00 -51.93 -0.42 0.50 16 41 H 0.07 1.27 7.94 -51.93 -0.41 0.86 16 42 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.97 7.40 -51.93 -0.38 0.58 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.02 0.50 6.99 -51.93 -0.36 0.14 16 50 H 0.07 1.73 4.17 -51.93 -0.22 1.51 16 51 H 0.15 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -32.99 396.12 -9.56 -42.56 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.54 Total: 1.30 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -2.65 Total: -0.98 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.30 Total: -56.37 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.13 Total: 18.03 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.99 -9.56 -42.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040530636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.014 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds