Wall clock time and date at job start Wed Apr 1 2020 01:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38223 * 119.61843 * 2 1 4 4 C 1.38626 * 119.16305 * 179.72322 * 3 2 1 5 5 C 1.38673 * 118.41690 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.42019 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47588 * 89.99571 * 6 5 4 8 8 O 1.21282 * 119.99563 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00119 * 180.02562 * 7 6 5 10 10 C 1.47084 * 125.62821 * 0.02562 * 9 7 6 11 11 C 1.54465 * 107.30226 * 180.98280 * 10 9 7 12 12 C 1.54352 * 102.85460 * 21.47916 * 11 10 9 13 13 C 1.47580 * 125.62518 * 179.72017 * 9 7 6 14 14 C 1.52069 * 110.61367 * 83.54111 * 12 11 10 15 15 C 1.53195 * 109.67928 * 64.18492 * 14 12 11 16 16 C 1.53193 * 109.27858 * 59.96282 * 15 14 12 17 17 N 1.46940 * 108.92766 * 304.67848 * 16 15 14 18 18 C 1.36929 * 120.71234 * 234.27804 * 17 16 15 19 19 H 1.08002 * 119.99793 * 27.16535 * 18 17 16 20 20 C 1.38810 * 120.00078 * 207.16376 * 18 17 16 21 21 N 1.31614 * 120.00260 * 17.16798 * 20 18 17 22 22 Si 1.86806 * 119.99956 * 197.16799 * 20 18 17 23 23 H 1.48503 * 109.46871 * 59.99931 * 22 20 18 24 24 H 1.48497 * 109.47271 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46902 * 300.00156 * 22 20 18 26 26 C 1.47111 * 118.57418 * 54.25964 * 17 16 15 27 27 C 1.38182 * 119.16708 * 359.97438 * 5 4 3 28 28 N 1.31849 * 119.61411 * 179.72426 * 2 1 3 29 29 H 1.09006 * 109.47571 * 89.99963 * 1 2 3 30 30 H 1.08997 * 109.47489 * 210.00522 * 1 2 3 31 31 H 1.09007 * 109.46915 * 330.00064 * 1 2 3 32 32 H 1.08006 * 120.42004 * 359.69953 * 3 2 1 33 33 H 1.08000 * 120.79665 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47561 * 210.00063 * 6 5 4 35 35 H 1.09007 * 109.47095 * 329.99160 * 6 5 4 36 36 H 1.09000 * 109.87451 * 300.41042 * 10 9 7 37 37 H 1.09003 * 109.87601 * 61.55297 * 10 9 7 38 38 H 1.09004 * 110.73454 * 139.82221 * 11 10 9 39 39 H 1.08998 * 110.73472 * 263.13334 * 11 10 9 40 40 H 1.08998 * 110.37738 * 275.54048 * 13 9 7 41 41 H 1.08995 * 110.37941 * 37.89189 * 13 9 7 42 42 H 1.08997 * 109.43789 * 184.24850 * 14 12 11 43 43 H 1.09003 * 109.43218 * 304.16591 * 14 12 11 44 44 H 1.08999 * 109.50012 * 179.90383 * 15 14 12 45 45 H 1.09000 * 109.50172 * 299.98093 * 15 14 12 46 46 H 1.09001 * 109.55963 * 64.51226 * 16 15 14 47 47 H 1.08993 * 109.56168 * 184.73357 * 16 15 14 48 48 H 0.96996 * 120.00313 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.57205 * 187.93858 * 26 17 16 50 50 H 1.09002 * 109.57573 * 67.55372 * 26 17 16 51 51 H 1.08002 * 119.62174 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5763 1.1906 0.0058 5 6 4.2265 -0.0342 0.0110 6 6 5.7321 -0.0989 0.0180 7 6 6.2276 -0.1179 1.4411 8 8 5.4359 -0.0829 2.3592 9 7 7.5503 -0.1737 1.6935 10 6 8.6148 -0.2199 0.6795 11 6 9.9619 -0.3016 1.4311 12 6 9.5504 -0.8470 2.8152 13 6 8.1699 -0.1922 3.0328 14 6 9.4352 -2.3629 2.7807 15 6 10.8084 -2.9782 2.4934 16 6 11.7885 -2.5649 3.5959 17 7 11.8081 -1.0987 3.6911 18 6 12.9871 -0.4079 3.6027 19 1 13.8165 -0.8237 3.0499 20 6 13.1162 0.8269 4.2236 21 7 12.2632 1.1853 5.1597 22 14 14.5007 1.9800 3.7306 23 1 14.3766 2.3145 2.2891 24 1 14.4193 3.2244 4.5368 25 1 15.8071 1.3175 3.9743 26 6 10.5339 -0.3889 3.8830 27 6 3.4766 -1.1948 0.0106 28 7 2.1585 -1.1462 0.0055 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5139 32 1 1.6508 2.1373 -0.0049 33 1 4.1367 2.1139 0.0056 34 1 6.0594 -1.0044 -0.4928 35 1 6.1357 0.7738 -0.4957 36 1 8.4882 -1.1000 0.0491 37 1 8.5849 0.6829 0.0694 38 1 10.6416 -0.9915 0.9309 39 1 10.4125 0.6865 1.5239 40 1 8.2839 0.8232 3.4123 41 1 7.5710 -0.7901 3.7198 42 1 9.0716 -2.7210 3.7438 43 1 8.7362 -2.6558 1.9973 44 1 10.7229 -4.0646 2.4711 45 1 11.1725 -2.6219 1.5298 46 1 11.4669 -2.9881 4.5476 47 1 12.7863 -2.9298 3.3528 48 1 12.3532 2.0482 5.5933 49 1 10.6970 0.6850 3.7927 50 1 10.1335 -0.6177 4.8706 51 1 3.9754 -2.1527 0.0150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040530637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:42 Heat of formation + Delta-G solvation = 15.465899 kcal Electronic energy + Delta-G solvation = -30358.390260 eV Core-core repulsion = 26450.670184 eV Total energy + Delta-G solvation = -3907.720077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.70587 -40.02235 -38.37858 -35.82526 -34.22151 -33.07074 -32.45809 -31.55215 -30.08851 -29.91809 -29.32938 -26.75002 -25.35208 -25.03047 -23.70188 -22.93902 -22.12916 -21.76567 -20.66036 -19.20193 -18.10378 -17.01276 -16.94087 -16.64817 -16.37993 -15.88541 -15.49847 -14.92464 -14.77360 -14.51687 -14.29638 -14.08348 -13.63231 -13.46222 -13.33781 -13.20817 -13.12862 -12.83896 -12.64461 -12.57020 -12.44169 -12.33709 -12.25418 -12.05238 -11.78392 -11.66260 -11.20768 -11.02112 -10.76546 -10.60646 -10.45492 -10.23385 -10.11170 -10.02264 -9.87331 -9.78184 -9.63620 -9.57025 -9.46700 -8.92017 -8.51649 -8.45045 -6.71461 -5.83107 -3.24380 0.90315 1.14004 2.69163 3.08262 3.34418 3.41289 3.41351 3.63958 4.10324 4.44671 4.47074 4.50750 4.60439 4.70619 4.80018 4.92541 5.01477 5.05845 5.19528 5.24404 5.30862 5.32776 5.35668 5.39370 5.43484 5.49543 5.58336 5.59364 5.64768 5.75546 5.80775 5.93732 6.00570 6.03076 6.07981 6.14080 6.17867 6.31003 6.32024 6.42062 6.46390 6.54173 6.64248 6.71943 6.77549 6.86515 6.97958 7.27362 7.56420 7.66597 7.75133 7.83337 8.24394 8.39424 9.16372 9.80099 10.37512 11.25554 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021350 B = 0.002321 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.190504 B =12059.133564 C =12654.973595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.121 3.879 3 C -0.171 4.171 4 C -0.058 4.058 5 C -0.120 4.120 6 C -0.093 4.093 7 C 0.526 3.474 8 O -0.540 6.540 9 N -0.613 5.613 10 C 0.097 3.903 11 C -0.108 4.108 12 C -0.090 4.090 13 C 0.118 3.882 14 C -0.091 4.091 15 C -0.134 4.134 16 C 0.144 3.856 17 N -0.588 5.588 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.900 3.100 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.189 3.811 27 C 0.119 3.881 28 N -0.485 5.485 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.045 0.955 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.017 0.983 47 H 0.052 0.948 48 H 0.255 0.745 49 H 0.091 0.909 50 H 0.020 0.980 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.974 -1.910 -13.676 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.017 4.017 3 C -0.191 4.191 4 C -0.084 4.084 5 C -0.122 4.122 6 C -0.134 4.134 7 C 0.314 3.686 8 O -0.418 6.418 9 N -0.346 5.346 10 C -0.026 4.026 11 C -0.146 4.146 12 C -0.093 4.093 13 C -0.004 4.004 14 C -0.129 4.129 15 C -0.173 4.173 16 C 0.017 3.983 17 N -0.311 5.311 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.730 3.270 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.063 3.937 27 C -0.038 4.038 28 N -0.194 5.194 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.034 0.966 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.109 0.891 50 H 0.038 0.962 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.935 -2.506 -13.083 21.547 hybrid contribution 1.371 1.498 -0.183 2.039 sum -15.564 -1.008 -13.266 20.476 Atomic orbital electron populations 1.20699 0.88953 1.03466 1.02886 1.21287 0.97000 0.88470 0.94912 1.21895 0.94699 0.99244 1.03246 1.21429 0.94433 0.97734 0.94804 1.20296 0.95294 0.94607 1.01995 1.20564 0.92015 1.05448 0.95366 1.20052 0.80845 0.76866 0.90877 1.90728 1.54086 1.50231 1.46720 1.48647 1.04734 1.72200 1.09056 1.22222 0.88328 1.00666 0.91340 1.22532 0.93976 1.02815 0.95243 1.21882 0.94295 0.95111 0.98003 1.22290 0.93311 1.01123 0.83683 1.21168 0.96858 0.94334 1.00525 1.22079 0.96247 0.98251 1.00769 1.20909 0.96616 0.86140 0.94606 1.43997 1.02858 0.99352 1.84844 1.19105 0.91826 1.00939 1.26095 0.91706 1.25011 0.98204 1.00172 0.96200 1.70008 1.38619 1.21691 1.24368 0.86409 0.82079 0.80529 0.77994 1.21065 1.21690 1.20928 1.20554 0.82995 0.98508 0.91662 1.22546 0.89204 0.97804 0.94283 1.67513 1.09720 1.29373 1.12798 0.90542 0.90503 0.90781 0.84878 0.84976 0.87769 0.87895 0.91867 0.91887 0.89753 0.90320 0.91173 0.90890 0.92639 0.93634 0.93217 0.92159 0.96553 0.92930 0.93531 0.89132 0.96206 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.17 36.01 0.37 -0.41 16 2 C 0.12 1.32 6.78 -82.59 -0.56 0.76 16 3 C -0.17 -1.70 9.74 -39.44 -0.38 -2.08 16 4 C -0.06 -0.62 9.86 -39.28 -0.39 -1.00 16 5 C -0.12 -1.36 4.39 -104.48 -0.46 -1.81 16 6 C -0.09 -0.93 5.05 -29.04 -0.15 -1.08 16 7 C 0.53 7.53 7.84 -10.99 -0.09 7.44 16 8 O -0.54 -9.96 16.30 5.56 0.09 -9.87 16 9 N -0.61 -8.71 3.32 -170.62 -0.57 -9.27 16 10 C 0.10 1.17 6.12 -2.95 -0.02 1.15 16 11 C -0.11 -1.65 5.67 -25.25 -0.14 -1.79 16 12 C -0.09 -1.54 0.55 -153.97 -0.08 -1.63 16 13 C 0.12 1.96 5.83 -2.76 -0.02 1.94 16 14 C -0.09 -1.45 4.69 -27.10 -0.13 -1.58 16 15 C -0.13 -2.15 5.91 -26.53 -0.16 -2.31 16 16 C 0.14 2.84 6.49 -3.70 -0.02 2.82 16 17 N -0.59 -13.69 2.89 -172.74 -0.50 -14.19 16 18 C -0.25 -6.46 9.60 -15.06 -0.14 -6.60 16 19 H 0.07 1.65 7.89 -52.49 -0.41 1.24 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -25.19 11.17 55.49 0.62 -24.57 16 22 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.19 4.16 3.96 -4.10 -0.02 4.15 16 27 C 0.12 1.43 10.86 -17.55 -0.19 1.24 16 28 N -0.48 -6.21 10.27 -9.47 -0.10 -6.31 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.29 6.09 -51.93 -0.32 0.97 16 39 H 0.08 1.34 7.87 -51.93 -0.41 0.93 16 40 H 0.07 1.23 8.01 -51.93 -0.42 0.82 16 41 H 0.07 1.28 7.95 -51.93 -0.41 0.86 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.04 0.66 7.83 -51.93 -0.41 0.26 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.96 6.31 -51.93 -0.33 0.63 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.02 7.94 -51.93 -0.41 0.61 16 48 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.09 2.24 5.90 -51.93 -0.31 1.94 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 400.96 15.07 6.04 6.04 Total: -1.00 -31.76 400.96 -10.57 -42.33 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.47 Total: 0.81 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -2.66 Total: -0.81 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.54 Total: -54.34 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.76 -10.57 -42.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040530637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.796 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds