Wall clock time and date at job start Wed Apr 1 2020 01:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38223 * 119.61843 * 2 1 4 4 C 1.38626 * 119.16305 * 179.72322 * 3 2 1 5 5 C 1.38673 * 118.41690 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.42019 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47588 * 89.99571 * 6 5 4 8 8 O 1.21282 * 119.99563 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00119 * 180.02562 * 7 6 5 10 10 C 1.47084 * 125.62821 * 0.02562 * 9 7 6 11 11 C 1.54465 * 107.30226 * 180.98280 * 10 9 7 12 12 C 1.54352 * 102.85460 * 21.47916 * 11 10 9 13 13 C 1.47580 * 125.62518 * 179.72017 * 9 7 6 14 14 C 1.52069 * 110.61367 * 83.54111 * 12 11 10 15 15 C 1.53195 * 109.67928 * 64.18492 * 14 12 11 16 16 C 1.53193 * 109.27858 * 59.96282 * 15 14 12 17 17 N 1.46940 * 108.92766 * 304.67848 * 16 15 14 18 18 C 1.36929 * 120.71234 * 234.27804 * 17 16 15 19 19 H 1.08002 * 119.99793 * 27.16535 * 18 17 16 20 20 C 1.38810 * 120.00078 * 207.16376 * 18 17 16 21 21 N 1.31614 * 120.00260 * 17.16798 * 20 18 17 22 22 Si 1.86806 * 119.99956 * 197.16799 * 20 18 17 23 23 H 1.48503 * 109.46871 * 59.99931 * 22 20 18 24 24 H 1.48497 * 109.47271 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46902 * 300.00156 * 22 20 18 26 26 C 1.47111 * 118.57418 * 54.25964 * 17 16 15 27 27 C 1.38182 * 119.16708 * 359.97438 * 5 4 3 28 28 N 1.31849 * 119.61411 * 179.72426 * 2 1 3 29 29 H 1.09006 * 109.47571 * 89.99963 * 1 2 3 30 30 H 1.08997 * 109.47489 * 210.00522 * 1 2 3 31 31 H 1.09007 * 109.46915 * 330.00064 * 1 2 3 32 32 H 1.08006 * 120.42004 * 359.69953 * 3 2 1 33 33 H 1.08000 * 120.79665 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47561 * 210.00063 * 6 5 4 35 35 H 1.09007 * 109.47095 * 329.99160 * 6 5 4 36 36 H 1.09000 * 109.87451 * 300.41042 * 10 9 7 37 37 H 1.09003 * 109.87601 * 61.55297 * 10 9 7 38 38 H 1.09004 * 110.73454 * 139.82221 * 11 10 9 39 39 H 1.08998 * 110.73472 * 263.13334 * 11 10 9 40 40 H 1.08998 * 110.37738 * 275.54048 * 13 9 7 41 41 H 1.08995 * 110.37941 * 37.89189 * 13 9 7 42 42 H 1.08997 * 109.43789 * 184.24850 * 14 12 11 43 43 H 1.09003 * 109.43218 * 304.16591 * 14 12 11 44 44 H 1.08999 * 109.50012 * 179.90383 * 15 14 12 45 45 H 1.09000 * 109.50172 * 299.98093 * 15 14 12 46 46 H 1.09001 * 109.55963 * 64.51226 * 16 15 14 47 47 H 1.08993 * 109.56168 * 184.73357 * 16 15 14 48 48 H 0.96996 * 120.00313 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.57205 * 187.93858 * 26 17 16 50 50 H 1.09002 * 109.57573 * 67.55372 * 26 17 16 51 51 H 1.08002 * 119.62174 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5763 1.1906 0.0058 5 6 4.2265 -0.0342 0.0110 6 6 5.7321 -0.0989 0.0180 7 6 6.2276 -0.1179 1.4411 8 8 5.4359 -0.0829 2.3592 9 7 7.5503 -0.1737 1.6935 10 6 8.6148 -0.2199 0.6795 11 6 9.9619 -0.3016 1.4311 12 6 9.5504 -0.8470 2.8152 13 6 8.1699 -0.1922 3.0328 14 6 9.4352 -2.3629 2.7807 15 6 10.8084 -2.9782 2.4934 16 6 11.7885 -2.5649 3.5959 17 7 11.8081 -1.0987 3.6911 18 6 12.9871 -0.4079 3.6027 19 1 13.8165 -0.8237 3.0499 20 6 13.1162 0.8269 4.2236 21 7 12.2632 1.1853 5.1597 22 14 14.5007 1.9800 3.7306 23 1 14.3766 2.3145 2.2891 24 1 14.4193 3.2244 4.5368 25 1 15.8071 1.3175 3.9743 26 6 10.5339 -0.3889 3.8830 27 6 3.4766 -1.1948 0.0106 28 7 2.1585 -1.1462 0.0055 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5139 32 1 1.6508 2.1373 -0.0049 33 1 4.1367 2.1139 0.0056 34 1 6.0594 -1.0044 -0.4928 35 1 6.1357 0.7738 -0.4957 36 1 8.4882 -1.1000 0.0491 37 1 8.5849 0.6829 0.0694 38 1 10.6416 -0.9915 0.9309 39 1 10.4125 0.6865 1.5239 40 1 8.2839 0.8232 3.4123 41 1 7.5710 -0.7901 3.7198 42 1 9.0716 -2.7210 3.7438 43 1 8.7362 -2.6558 1.9973 44 1 10.7229 -4.0646 2.4711 45 1 11.1725 -2.6219 1.5298 46 1 11.4669 -2.9881 4.5476 47 1 12.7863 -2.9298 3.3528 48 1 12.3532 2.0482 5.5933 49 1 10.6970 0.6850 3.7927 50 1 10.1335 -0.6177 4.8706 51 1 3.9754 -2.1527 0.0150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040530637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:41 Heat of formation + Delta-G solvation = -2.465132 kcal Electronic energy + Delta-G solvation = -30359.167808 eV Core-core repulsion = 26450.670184 eV Total energy + Delta-G solvation = -3908.497625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.69765 -41.08075 -39.66225 -37.29525 -35.04783 -34.77091 -33.21985 -32.95363 -31.75986 -30.82515 -30.53198 -27.79968 -27.18623 -26.18073 -24.50575 -24.18079 -23.66545 -22.66452 -22.11245 -20.32643 -19.57259 -18.52650 -18.02815 -17.74879 -17.21122 -17.05005 -16.71705 -16.33872 -15.79836 -15.77831 -15.55937 -15.25974 -15.10870 -14.77577 -14.72837 -14.20701 -14.16228 -14.01106 -13.86542 -13.72196 -13.41764 -13.37580 -13.17823 -13.10771 -12.94638 -12.91328 -12.68504 -12.48569 -12.43677 -12.21042 -12.05501 -11.84722 -11.65589 -11.39206 -11.16521 -11.04120 -11.01469 -10.68937 -10.50047 -10.41194 -9.70525 -9.62519 -8.64603 -7.84084 -5.27918 0.11901 0.35832 1.49035 1.50150 1.57088 1.62188 1.99917 2.53651 2.82397 3.28535 3.39019 3.43432 3.68495 3.73171 3.79848 3.82904 3.92093 4.02301 4.03945 4.06467 4.27250 4.30843 4.37885 4.43931 4.53356 4.54845 4.59246 4.67990 4.70293 4.72675 4.75006 4.79473 4.83603 4.87528 4.94401 4.98664 5.14000 5.14756 5.17736 5.20684 5.21409 5.31217 5.32686 5.34997 5.39665 5.49505 5.62121 5.71004 5.76698 5.80608 6.41092 6.57775 7.04406 7.14560 7.17576 7.89272 8.42113 9.22203 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021350 B = 0.002321 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.190504 B =12059.133564 C =12654.973595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.103 3.897 3 C -0.175 4.175 4 C -0.070 4.070 5 C -0.132 4.132 6 C -0.081 4.081 7 C 0.524 3.476 8 O -0.589 6.589 9 N -0.611 5.611 10 C 0.104 3.896 11 C -0.104 4.104 12 C -0.082 4.082 13 C 0.124 3.876 14 C -0.086 4.086 15 C -0.120 4.120 16 C 0.136 3.864 17 N -0.603 5.603 18 C -0.251 4.251 19 H 0.070 0.930 20 C -0.051 4.051 21 N -0.938 5.938 22 Si 0.962 3.038 23 H -0.274 1.274 24 H -0.300 1.300 25 H -0.278 1.278 26 C 0.202 3.798 27 C 0.100 3.900 28 N -0.515 5.515 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.160 0.840 33 H 0.150 0.850 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.004 0.996 47 H 0.055 0.945 48 H 0.247 0.753 49 H 0.057 0.943 50 H -0.019 1.019 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.384 -2.359 -17.160 23.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.034 4.034 3 C -0.194 4.194 4 C -0.096 4.096 5 C -0.134 4.134 6 C -0.121 4.121 7 C 0.314 3.686 8 O -0.470 6.470 9 N -0.344 5.344 10 C -0.018 4.018 11 C -0.142 4.142 12 C -0.084 4.084 13 C 0.000 4.000 14 C -0.123 4.123 15 C -0.159 4.159 16 C 0.011 3.989 17 N -0.326 5.326 18 C -0.382 4.382 19 H 0.087 0.913 20 C -0.246 4.246 21 N -0.584 5.584 22 Si 0.790 3.210 23 H -0.199 1.199 24 H -0.227 1.227 25 H -0.204 1.204 26 C 0.075 3.925 27 C -0.057 4.057 28 N -0.224 5.224 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.177 0.823 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.022 0.978 47 H 0.073 0.927 48 H 0.056 0.944 49 H 0.075 0.925 50 H -0.001 1.001 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -17.331 -2.989 -16.617 24.195 hybrid contribution 1.488 1.607 0.995 2.406 sum -15.844 -1.382 -15.621 22.292 Atomic orbital electron populations 1.20774 0.87015 1.04003 1.03973 1.21856 0.98539 0.88490 0.94529 1.22239 0.94842 1.00048 1.02299 1.21796 0.95059 0.98333 0.94373 1.20472 0.96093 0.94632 1.02191 1.20601 0.91040 1.08226 0.92194 1.20864 0.80049 0.75341 0.92316 1.90712 1.55220 1.52366 1.48702 1.48677 1.05456 1.72051 1.08190 1.22348 0.85168 1.03790 0.90494 1.22435 0.96150 1.01393 0.94199 1.21605 0.92962 0.96350 0.97531 1.21976 0.93174 0.99532 0.85309 1.21132 0.97544 0.92801 1.00856 1.21943 0.94672 1.00038 0.99256 1.21102 0.98138 0.84002 0.95676 1.44246 1.02539 1.00956 1.84856 1.19437 0.92661 1.01065 1.24997 0.91272 1.25730 1.00592 1.01786 0.96510 1.70186 1.40655 1.21636 1.25947 0.85423 0.79578 0.78154 0.77808 1.19933 1.22712 1.20393 1.20245 0.83897 0.96643 0.91697 1.22829 0.89364 0.98739 0.94748 1.67521 1.10376 1.30612 1.13938 0.89086 0.91276 0.88910 0.82255 0.83253 0.84779 0.85020 0.88245 0.89170 0.88990 0.92786 0.93351 0.92429 0.93953 0.90859 0.90232 0.91085 0.97812 0.92677 0.94350 0.92478 1.00085 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 10.17 71.24 0.72 -0.65 16 2 C 0.10 2.14 6.78 42.55 0.29 2.43 16 3 C -0.17 -3.15 9.74 22.36 0.22 -2.93 16 4 C -0.07 -1.34 9.86 22.47 0.22 -1.11 16 5 C -0.13 -2.70 4.39 -19.77 -0.09 -2.79 16 6 C -0.08 -1.32 5.05 29.10 0.15 -1.17 16 7 C 0.52 13.94 7.84 87.66 0.69 14.63 16 8 O -0.59 -21.59 16.30 -3.04 -0.05 -21.64 16 9 N -0.61 -16.11 3.32 -812.11 -2.70 -18.81 16 10 C 0.10 2.07 6.12 86.77 0.53 2.60 16 11 C -0.10 -2.97 5.67 31.55 0.18 -2.80 16 12 C -0.08 -2.80 0.55 -51.83 -0.03 -2.82 16 13 C 0.12 4.19 5.83 86.62 0.50 4.69 16 14 C -0.09 -2.57 4.69 30.35 0.14 -2.43 16 15 C -0.12 -3.54 5.91 30.72 0.18 -3.36 16 16 C 0.14 5.33 6.49 86.36 0.56 5.89 16 17 N -0.60 -28.62 2.89 -700.44 -2.02 -30.64 16 18 C -0.25 -13.14 9.60 84.03 0.81 -12.33 16 19 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 20 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 21 N -0.94 -54.80 11.17 21.65 0.24 -54.56 16 22 Si 0.96 43.59 29.59 68.60 2.03 45.62 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 C 0.20 9.32 3.96 86.01 0.34 9.66 16 27 C 0.10 2.29 10.86 84.67 0.92 3.21 16 28 N -0.51 -12.88 10.27 -183.89 -1.89 -14.77 16 29 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 0.89 8.08 -2.38 -0.02 0.87 16 32 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 33 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.13 1.42 8.09 -2.39 -0.02 1.40 16 35 H 0.13 1.43 8.10 -2.38 -0.02 1.41 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 2.50 6.09 -2.38 -0.01 2.49 16 39 H 0.05 1.81 7.87 -2.39 -0.02 1.79 16 40 H 0.05 1.82 8.01 -2.39 -0.02 1.80 16 41 H 0.06 2.10 7.95 -2.39 -0.02 2.08 16 42 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.85 7.83 -2.39 -0.02 1.83 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 1.98 6.31 -2.39 -0.02 1.97 16 46 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.05 2.10 7.94 -2.39 -0.02 2.08 16 48 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 49 H 0.06 3.01 5.90 -2.39 -0.01 3.00 16 50 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 51 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -73.80 400.96 3.28 -70.53 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.91 Total: 15.94 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 6.75 Total: 8.35 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -6.36 Total: -118.78 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -73.80 3.28 -70.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040530637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.061 kcal (2) G-P(sol) polarization free energy of solvation -73.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds