Wall clock time and date at job start Wed Apr 1 2020 01:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38345 * 119.46380 * 2 1 4 4 C 1.38355 * 119.30929 * 180.02562 * 3 2 1 5 5 C 1.40028 * 118.28321 * 359.97438 * 4 3 2 6 6 C 1.47846 * 120.55790 * 179.97438 * 5 4 3 7 7 O 1.21550 * 119.99627 * 131.60876 * 6 5 4 8 8 N 1.34783 * 119.99989 * 311.61771 * 6 5 4 9 9 C 1.48157 * 127.02503 * 354.63852 * 8 6 5 10 10 C 1.55045 * 103.31100 * 140.94705 * 9 8 6 11 11 C 1.54157 * 102.73156 * 36.99466 * 10 9 8 12 12 C 1.47611 * 127.02456 * 174.60433 * 8 6 5 13 13 C 1.52494 * 110.05370 * 219.38924 * 11 10 9 14 14 C 1.53133 * 109.58348 * 178.27178 * 13 11 10 15 15 C 1.53131 * 109.32221 * 60.51820 * 14 13 11 16 16 N 1.46935 * 108.87908 * 304.92040 * 15 14 13 17 17 C 1.36933 * 120.67857 * 234.04514 * 16 15 14 18 18 H 1.07998 * 119.99750 * 149.37068 * 17 16 15 19 19 C 1.38810 * 119.99998 * 329.36519 * 17 16 15 20 20 N 1.31615 * 120.00007 * 160.55403 * 19 17 16 21 21 Si 1.86798 * 120.00035 * 340.55056 * 19 17 16 22 22 H 1.48511 * 109.46952 * 92.05086 * 21 19 17 23 23 H 1.48505 * 109.47350 * 212.04727 * 21 19 17 24 24 H 1.48497 * 109.47310 * 332.05365 * 21 19 17 25 25 C 1.47036 * 118.63791 * 54.02218 * 16 15 14 26 26 C 1.39515 * 118.88443 * 0.25654 * 5 4 3 27 27 C 1.50705 * 119.71742 * 179.74139 * 26 5 4 28 28 N 1.31700 * 120.56674 * 359.49940 * 26 5 4 29 29 H 1.09001 * 109.47109 * 90.00086 * 1 2 3 30 30 H 1.08999 * 109.46994 * 210.00167 * 1 2 3 31 31 H 1.08998 * 109.46695 * 329.99717 * 1 2 3 32 32 H 1.08003 * 120.34839 * 359.97438 * 3 2 1 33 33 H 1.07993 * 120.86307 * 180.02562 * 4 3 2 34 34 H 1.08996 * 110.65774 * 259.40416 * 9 8 6 35 35 H 1.09003 * 110.65395 * 22.32935 * 9 8 6 36 36 H 1.09003 * 110.76203 * 278.67873 * 10 9 8 37 37 H 1.09003 * 110.75640 * 155.30290 * 10 9 8 38 38 H 1.09005 * 109.97002 * 86.03231 * 12 8 6 39 39 H 1.08998 * 110.00377 * 324.77676 * 12 8 6 40 40 H 1.09005 * 109.45006 * 298.29633 * 13 11 10 41 41 H 1.09002 * 109.45338 * 58.24107 * 13 11 10 42 42 H 1.08994 * 109.50150 * 180.44229 * 14 13 11 43 43 H 1.09002 * 109.49870 * 300.54425 * 14 13 11 44 44 H 1.08990 * 109.56975 * 185.10026 * 15 14 13 45 45 H 1.08999 * 109.56907 * 64.74257 * 15 14 13 46 46 H 0.97002 * 120.00228 * 179.97438 * 20 19 17 47 47 H 1.08995 * 109.58184 * 187.41324 * 25 16 15 48 48 H 1.08997 * 109.58374 * 66.99481 * 25 16 15 49 49 H 1.09002 * 109.46552 * 84.52371 * 27 26 5 50 50 H 1.09002 * 109.46681 * 204.51398 * 27 26 5 51 51 H 1.08994 * 109.47237 * 324.51757 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2045 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2312 -0.0341 -0.0005 6 6 5.7083 -0.0968 -0.0016 7 8 6.2865 -0.8206 0.7853 8 7 6.4138 0.6488 -0.8752 9 6 5.8745 1.4935 -1.9663 10 6 6.7893 2.7450 -1.9344 11 6 8.1702 2.1478 -1.5986 12 6 7.8816 0.7912 -0.9397 13 6 8.9130 3.0609 -0.6290 14 6 10.2644 2.4369 -0.2693 15 6 11.1008 2.2719 -1.5413 16 7 10.3292 1.4937 -2.5201 17 6 10.8566 0.3641 -3.0866 18 1 10.2062 -0.4456 -3.3828 19 6 12.2272 0.2597 -3.2802 20 7 12.7790 -0.9224 -3.4546 21 14 13.2883 1.7969 -3.2933 22 1 13.7965 2.0593 -1.9228 23 1 14.4344 1.5995 -4.2168 24 1 12.4777 2.9541 -3.7506 25 6 8.9790 1.9526 -2.8785 26 6 3.4716 -1.2043 -0.0054 27 6 4.1628 -2.5436 -0.0114 28 7 2.1558 -1.1488 -0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3632 0.8900 0.5139 32 1 1.6444 2.1381 -0.0004 33 1 4.1275 2.1263 -0.0001 34 1 5.9566 0.9818 -2.9252 35 1 4.8385 1.7664 -1.7651 36 1 6.4686 3.4383 -1.1568 37 1 6.8068 3.2356 -2.9076 38 1 8.3076 -0.0126 -1.5403 39 1 8.3030 0.7682 0.0653 40 1 9.0747 4.0322 -1.0966 41 1 8.3196 3.1883 0.2765 42 1 10.7906 3.0867 0.4298 43 1 10.1040 1.4615 0.1900 44 1 12.0257 1.7462 -1.3044 45 1 11.3324 3.2530 -1.9558 46 1 13.7367 -0.9953 -3.5903 47 1 8.4941 1.2055 -3.5067 48 1 9.0453 2.8981 -3.4166 49 1 4.4167 -2.8258 1.0104 50 1 3.4983 -3.2933 -0.4409 51 1 5.0728 -2.4801 -0.6078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040543624.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:47 Heat of formation + Delta-G solvation = 25.138984 kcal Electronic energy + Delta-G solvation = -31097.757560 eV Core-core repulsion = 27190.456939 eV Total energy + Delta-G solvation = -3907.300620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.06104 -39.96915 -38.35682 -36.10768 -33.86731 -33.50966 -32.85262 -31.40326 -30.91695 -29.35116 -29.08906 -27.81467 -25.71852 -25.34956 -23.76937 -22.86132 -22.32028 -21.96573 -20.96813 -19.83256 -18.34984 -17.38014 -16.95159 -16.74153 -16.13318 -15.61276 -15.47065 -15.33223 -15.00068 -14.43097 -14.13508 -13.98613 -13.79201 -13.56717 -13.54040 -13.41546 -13.18604 -13.07653 -12.71556 -12.57838 -12.33683 -12.25679 -12.23523 -12.15140 -12.03194 -11.88860 -11.64436 -11.40236 -11.10355 -10.85681 -10.57453 -10.50767 -10.19596 -10.07297 -10.02827 -9.84384 -9.66913 -9.59202 -9.48760 -9.05186 -8.61212 -8.55933 -6.95668 -5.96481 -3.35903 0.53743 0.92600 2.65453 2.95244 3.31580 3.46500 3.46890 3.49841 3.87179 4.30812 4.35382 4.46101 4.51729 4.60111 4.69626 4.78238 4.89534 5.01188 5.11093 5.14600 5.22262 5.27581 5.28843 5.29117 5.40237 5.44965 5.47661 5.55119 5.59392 5.62016 5.70627 5.73351 5.83193 5.88594 5.90453 5.94516 5.98170 6.02525 6.15035 6.24476 6.31783 6.33921 6.36982 6.45170 6.50713 6.60567 6.67639 6.71419 6.91853 7.55393 7.69548 7.96533 8.14343 8.32013 8.91920 9.69913 10.08429 11.19351 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.002792 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.722008 B =10024.903541 C =10606.240176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.146 3.854 3 C -0.186 4.186 4 C -0.038 4.038 5 C -0.180 4.180 6 C 0.580 3.420 7 O -0.528 6.528 8 N -0.613 5.613 9 C 0.094 3.906 10 C -0.124 4.124 11 C -0.087 4.087 12 C 0.126 3.874 13 C -0.094 4.094 14 C -0.140 4.140 15 C 0.126 3.874 16 N -0.604 5.604 17 C -0.261 4.261 18 H 0.083 0.917 19 C 0.027 3.973 20 N -0.907 5.907 21 Si 0.884 3.116 22 H -0.288 1.288 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.163 3.837 26 C 0.185 3.815 27 C -0.105 4.105 28 N -0.487 5.487 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.024 0.976 46 H 0.263 0.737 47 H 0.064 0.936 48 H 0.027 0.973 49 H 0.089 0.911 50 H 0.077 0.923 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.724 8.338 5.682 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.008 3.992 3 C -0.206 4.206 4 C -0.064 4.064 5 C -0.185 4.185 6 C 0.367 3.633 7 O -0.405 6.405 8 N -0.346 5.346 9 C -0.029 4.029 10 C -0.163 4.163 11 C -0.089 4.089 12 C 0.005 3.995 13 C -0.131 4.131 14 C -0.179 4.179 15 C 0.001 3.999 16 N -0.327 5.327 17 C -0.390 4.390 18 H 0.101 0.899 19 C -0.172 4.172 20 N -0.549 5.549 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.196 1.196 25 C 0.037 3.963 26 C 0.047 3.953 27 C -0.163 4.163 28 N -0.198 5.198 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.045 0.955 49 H 0.107 0.893 50 H 0.096 0.904 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.758 6.982 6.114 24.577 hybrid contribution 1.271 1.784 -0.046 2.191 sum -21.487 8.766 6.068 23.986 Atomic orbital electron populations 1.20765 0.88518 1.03687 1.03340 1.21480 0.97200 0.88239 0.92245 1.21855 0.94384 0.99466 1.04879 1.21725 0.94476 0.97236 0.92995 1.20764 0.94479 0.95019 1.08280 1.17591 0.85762 0.79610 0.80346 1.90819 1.71079 1.38853 1.39716 1.48855 1.08700 1.46022 1.31056 1.22740 0.98034 0.91368 0.90765 1.22748 0.94658 0.96358 1.02556 1.21641 0.94581 0.94159 0.98528 1.22168 0.77644 0.97674 1.02028 1.21375 0.96300 0.97907 0.97550 1.22091 0.96078 1.00721 0.99014 1.21316 0.95077 0.94888 0.88642 1.44342 1.13526 1.29118 1.45720 1.18847 0.91634 0.92226 1.36246 0.89918 1.25344 0.96922 0.96244 0.98722 1.69829 1.11169 1.22111 1.51802 0.86912 0.79889 0.85046 0.76727 1.21570 1.23193 1.19601 1.20932 0.85838 0.97788 0.91750 1.21378 0.88617 0.95091 0.90247 1.20801 0.99755 0.91512 1.04183 1.67451 1.08873 1.29111 1.14337 0.90053 0.90246 0.90498 0.84256 0.84156 0.90507 0.90483 0.91048 0.89725 0.89793 0.90635 0.92164 0.92988 0.92728 0.91502 0.91051 0.95848 0.92735 0.91761 0.95538 0.89276 0.90384 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.16 36.01 0.37 -0.28 16 2 C 0.15 1.41 6.78 -82.51 -0.56 0.85 16 3 C -0.19 -1.57 9.72 -39.50 -0.38 -1.95 16 4 C -0.04 -0.38 7.92 -38.87 -0.31 -0.69 16 5 C -0.18 -2.33 5.33 -104.82 -0.56 -2.89 16 6 C 0.58 9.00 6.53 -12.33 -0.08 8.92 16 7 O -0.53 -10.05 16.17 5.32 0.09 -9.96 16 8 N -0.61 -8.82 3.30 -170.95 -0.56 -9.38 16 9 C 0.09 1.03 6.75 -2.05 -0.01 1.02 16 10 C -0.12 -1.34 6.15 -25.05 -0.15 -1.49 16 11 C -0.09 -1.27 0.62 -154.05 -0.09 -1.36 16 12 C 0.13 2.09 5.60 -3.14 -0.02 2.08 16 13 C -0.09 -1.35 4.43 -26.92 -0.12 -1.47 16 14 C -0.14 -2.39 5.86 -26.60 -0.16 -2.55 16 15 C 0.13 2.65 4.20 -3.74 -0.02 2.63 16 16 N -0.60 -13.57 2.52 -172.60 -0.44 -14.01 16 17 C -0.26 -7.07 10.02 -15.06 -0.15 -7.22 16 18 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 19 C 0.03 0.77 5.23 -17.43 -0.09 0.68 16 20 N -0.91 -27.60 13.97 55.49 0.78 -26.83 16 21 Si 0.88 22.11 24.39 -169.99 -4.15 17.96 16 22 H -0.29 -7.00 6.64 56.52 0.38 -6.62 16 23 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 24 H -0.27 -6.62 6.74 56.52 0.38 -6.23 16 25 C 0.16 2.93 4.84 -3.93 -0.02 2.91 16 26 C 0.19 2.43 6.82 -82.17 -0.56 1.87 16 27 C -0.11 -1.31 9.01 36.01 0.32 -0.99 16 28 N -0.49 -5.97 10.17 -5.42 -0.06 -6.03 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 32 H 0.14 0.74 8.06 -52.48 -0.42 0.31 16 33 H 0.14 1.15 7.24 -52.49 -0.38 0.77 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.69 5.11 -51.93 -0.27 0.42 16 36 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 37 H 0.08 0.81 7.79 -51.93 -0.40 0.40 16 38 H 0.08 1.66 7.63 -51.93 -0.40 1.27 16 39 H 0.08 1.37 6.39 -51.93 -0.33 1.04 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.07 1.23 6.58 -51.93 -0.34 0.89 16 44 H 0.07 1.67 4.79 -51.93 -0.25 1.42 16 45 H 0.02 0.49 7.10 -51.93 -0.37 0.12 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.06 1.17 7.91 -51.93 -0.41 0.76 16 48 H 0.03 0.46 8.09 -51.93 -0.42 0.04 16 49 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.08 1.07 7.06 -51.93 -0.37 0.71 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -33.04 388.16 -9.25 -42.29 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.17 Total: 0.05 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.59 Total: 0.06 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.28 Total: -56.24 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.15 Total: 17.96 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.04 -9.25 -42.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040543624.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.433 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds