Wall clock time and date at job start Wed Apr 1 2020 01:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38345 * 119.46380 * 2 1 4 4 C 1.38355 * 119.30929 * 180.02562 * 3 2 1 5 5 C 1.40028 * 118.28321 * 359.97438 * 4 3 2 6 6 C 1.47846 * 120.55790 * 179.97438 * 5 4 3 7 7 O 1.21550 * 119.99627 * 131.60876 * 6 5 4 8 8 N 1.34783 * 119.99989 * 311.61771 * 6 5 4 9 9 C 1.48157 * 127.02503 * 354.63852 * 8 6 5 10 10 C 1.55045 * 103.31100 * 140.94705 * 9 8 6 11 11 C 1.54157 * 102.73156 * 36.99466 * 10 9 8 12 12 C 1.47611 * 127.02456 * 174.60433 * 8 6 5 13 13 C 1.52494 * 110.05370 * 219.38924 * 11 10 9 14 14 C 1.53133 * 109.58348 * 178.27178 * 13 11 10 15 15 C 1.53131 * 109.32221 * 60.51820 * 14 13 11 16 16 N 1.46935 * 108.87908 * 304.92040 * 15 14 13 17 17 C 1.36933 * 120.67857 * 234.04514 * 16 15 14 18 18 H 1.07998 * 119.99750 * 149.37068 * 17 16 15 19 19 C 1.38810 * 119.99998 * 329.36519 * 17 16 15 20 20 N 1.31615 * 120.00007 * 160.55403 * 19 17 16 21 21 Si 1.86798 * 120.00035 * 340.55056 * 19 17 16 22 22 H 1.48511 * 109.46952 * 92.05086 * 21 19 17 23 23 H 1.48505 * 109.47350 * 212.04727 * 21 19 17 24 24 H 1.48497 * 109.47310 * 332.05365 * 21 19 17 25 25 C 1.47036 * 118.63791 * 54.02218 * 16 15 14 26 26 C 1.39515 * 118.88443 * 0.25654 * 5 4 3 27 27 C 1.50705 * 119.71742 * 179.74139 * 26 5 4 28 28 N 1.31700 * 120.56674 * 359.49940 * 26 5 4 29 29 H 1.09001 * 109.47109 * 90.00086 * 1 2 3 30 30 H 1.08999 * 109.46994 * 210.00167 * 1 2 3 31 31 H 1.08998 * 109.46695 * 329.99717 * 1 2 3 32 32 H 1.08003 * 120.34839 * 359.97438 * 3 2 1 33 33 H 1.07993 * 120.86307 * 180.02562 * 4 3 2 34 34 H 1.08996 * 110.65774 * 259.40416 * 9 8 6 35 35 H 1.09003 * 110.65395 * 22.32935 * 9 8 6 36 36 H 1.09003 * 110.76203 * 278.67873 * 10 9 8 37 37 H 1.09003 * 110.75640 * 155.30290 * 10 9 8 38 38 H 1.09005 * 109.97002 * 86.03231 * 12 8 6 39 39 H 1.08998 * 110.00377 * 324.77676 * 12 8 6 40 40 H 1.09005 * 109.45006 * 298.29633 * 13 11 10 41 41 H 1.09002 * 109.45338 * 58.24107 * 13 11 10 42 42 H 1.08994 * 109.50150 * 180.44229 * 14 13 11 43 43 H 1.09002 * 109.49870 * 300.54425 * 14 13 11 44 44 H 1.08990 * 109.56975 * 185.10026 * 15 14 13 45 45 H 1.08999 * 109.56907 * 64.74257 * 15 14 13 46 46 H 0.97002 * 120.00228 * 179.97438 * 20 19 17 47 47 H 1.08995 * 109.58184 * 187.41324 * 25 16 15 48 48 H 1.08997 * 109.58374 * 66.99481 * 25 16 15 49 49 H 1.09002 * 109.46552 * 84.52371 * 27 26 5 50 50 H 1.09002 * 109.46681 * 204.51398 * 27 26 5 51 51 H 1.08994 * 109.47237 * 324.51757 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2045 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2312 -0.0341 -0.0005 6 6 5.7083 -0.0968 -0.0016 7 8 6.2865 -0.8206 0.7853 8 7 6.4138 0.6488 -0.8752 9 6 5.8745 1.4935 -1.9663 10 6 6.7893 2.7450 -1.9344 11 6 8.1702 2.1478 -1.5986 12 6 7.8816 0.7912 -0.9397 13 6 8.9130 3.0609 -0.6290 14 6 10.2644 2.4369 -0.2693 15 6 11.1008 2.2719 -1.5413 16 7 10.3292 1.4937 -2.5201 17 6 10.8566 0.3641 -3.0866 18 1 10.2062 -0.4456 -3.3828 19 6 12.2272 0.2597 -3.2802 20 7 12.7790 -0.9224 -3.4546 21 14 13.2883 1.7969 -3.2933 22 1 13.7965 2.0593 -1.9228 23 1 14.4344 1.5995 -4.2168 24 1 12.4777 2.9541 -3.7506 25 6 8.9790 1.9526 -2.8785 26 6 3.4716 -1.2043 -0.0054 27 6 4.1628 -2.5436 -0.0114 28 7 2.1558 -1.1488 -0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3632 0.8900 0.5139 32 1 1.6444 2.1381 -0.0004 33 1 4.1275 2.1263 -0.0001 34 1 5.9566 0.9818 -2.9252 35 1 4.8385 1.7664 -1.7651 36 1 6.4686 3.4383 -1.1568 37 1 6.8068 3.2356 -2.9076 38 1 8.3076 -0.0126 -1.5403 39 1 8.3030 0.7682 0.0653 40 1 9.0747 4.0322 -1.0966 41 1 8.3196 3.1883 0.2765 42 1 10.7906 3.0867 0.4298 43 1 10.1040 1.4615 0.1900 44 1 12.0257 1.7462 -1.3044 45 1 11.3324 3.2530 -1.9558 46 1 13.7367 -0.9953 -3.5903 47 1 8.4941 1.2055 -3.5067 48 1 9.0453 2.8981 -3.4166 49 1 4.4167 -2.8258 1.0104 50 1 3.4983 -3.2933 -0.4409 51 1 5.0728 -2.4801 -0.6078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040543624.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:45 Heat of formation + Delta-G solvation = 3.590310 kcal Electronic energy + Delta-G solvation = -31098.691980 eV Core-core repulsion = 27190.456939 eV Total energy + Delta-G solvation = -3908.235041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.05001 -41.06027 -39.61854 -37.54743 -34.98999 -34.65824 -34.01416 -32.88744 -32.56834 -30.24489 -30.09420 -28.80783 -27.32161 -26.75328 -24.88203 -23.79321 -23.57624 -23.16219 -22.37050 -20.86147 -19.69054 -18.72884 -18.38853 -17.90317 -17.23434 -17.14188 -16.72664 -16.36468 -15.94366 -15.77695 -15.43131 -15.24511 -15.07275 -14.97983 -14.69643 -14.46244 -14.24732 -14.16872 -14.01432 -13.75350 -13.46482 -13.42869 -13.29108 -13.15017 -13.03205 -12.95911 -12.87459 -12.72793 -12.56574 -12.46149 -12.12249 -11.85513 -11.68262 -11.54643 -11.30452 -11.22824 -11.08017 -10.86379 -10.63969 -10.52204 -9.93231 -9.72358 -8.85603 -8.16851 -5.51188 -0.30826 0.15271 1.31112 1.40524 1.50856 1.51290 1.84612 2.42474 2.62404 3.05017 3.09490 3.28581 3.38410 3.61047 3.68980 3.69440 3.74954 3.78672 4.02487 4.16670 4.22783 4.24681 4.33072 4.40562 4.46283 4.48396 4.50368 4.56407 4.56806 4.62763 4.71833 4.77913 4.79449 4.82886 4.87743 4.95935 4.99880 5.00853 5.02825 5.07450 5.08285 5.13172 5.14948 5.19936 5.22833 5.31883 5.44915 5.52283 5.63620 5.88879 6.13537 6.42872 6.87886 6.93965 6.95555 7.63286 8.04408 9.03586 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.002792 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.722008 B =10024.903541 C =10606.240176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.138 3.862 3 C -0.169 4.169 4 C -0.034 4.034 5 C -0.199 4.199 6 C 0.577 3.423 7 O -0.579 6.579 8 N -0.611 5.611 9 C 0.091 3.909 10 C -0.109 4.109 11 C -0.079 4.079 12 C 0.134 3.866 13 C -0.087 4.087 14 C -0.136 4.136 15 C 0.120 3.880 16 N -0.618 5.618 17 C -0.243 4.243 18 H 0.041 0.959 19 C -0.038 4.038 20 N -0.962 5.962 21 Si 0.953 3.047 22 H -0.278 1.278 23 H -0.314 1.314 24 H -0.253 1.253 25 C 0.160 3.840 26 C 0.164 3.836 27 C -0.100 4.100 28 N -0.508 5.508 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.184 0.816 33 H 0.166 0.834 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.034 0.966 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.041 0.959 46 H 0.260 0.740 47 H 0.049 0.951 48 H 0.051 0.949 49 H 0.079 0.921 50 H 0.089 0.911 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.229 13.704 6.047 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.000 4.000 3 C -0.189 4.189 4 C -0.060 4.060 5 C -0.205 4.205 6 C 0.366 3.634 7 O -0.459 6.459 8 N -0.343 5.343 9 C -0.031 4.031 10 C -0.148 4.148 11 C -0.082 4.082 12 C 0.011 3.989 13 C -0.125 4.125 14 C -0.175 4.175 15 C -0.004 4.004 16 N -0.343 5.343 17 C -0.373 4.373 18 H 0.059 0.941 19 C -0.232 4.232 20 N -0.608 5.608 21 Si 0.781 3.219 22 H -0.205 1.205 23 H -0.243 1.243 24 H -0.176 1.176 25 C 0.036 3.964 26 C 0.026 3.974 27 C -0.158 4.158 28 N -0.219 5.219 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.201 0.799 33 H 0.184 0.816 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.097 0.903 50 H 0.108 0.892 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.321 12.411 6.472 29.811 hybrid contribution 2.187 0.017 -0.137 2.191 sum -24.134 12.428 6.335 27.875 Atomic orbital electron populations 1.20893 0.85913 1.04802 1.04481 1.22223 0.98969 0.88070 0.90719 1.22308 0.93689 1.00644 1.02210 1.22025 0.95393 0.96603 0.91962 1.20578 0.92396 0.96606 1.10879 1.18128 0.87065 0.78596 0.79602 1.90780 1.72369 1.40900 1.41890 1.48922 1.07662 1.46160 1.31588 1.22988 0.99847 0.90939 0.89285 1.22771 0.90893 0.96196 1.04896 1.21516 0.96774 0.93202 0.96678 1.21859 0.79249 0.97797 0.99991 1.21380 0.94443 0.98200 0.98450 1.22013 0.97710 1.00443 0.97290 1.21383 0.94474 0.94518 0.90049 1.44450 1.15304 1.28224 1.46287 1.18730 0.91174 0.92827 1.34556 0.94111 1.26032 0.98481 0.99038 0.99654 1.69988 1.11306 1.24548 1.54964 0.85793 0.77742 0.81495 0.76846 1.20455 1.24270 1.17644 1.21129 0.83621 0.98044 0.93646 1.21327 0.89370 0.94984 0.91718 1.20682 0.99153 0.92694 1.03243 1.67469 1.08216 1.30972 1.15269 0.88709 0.90954 0.87612 0.79860 0.81625 0.91075 0.87331 0.88033 0.87303 0.94771 0.92781 0.89605 0.90744 0.90077 0.94098 0.94196 0.94156 0.93082 0.93242 0.93079 0.90264 0.89239 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.16 71.24 0.72 -0.15 16 2 C 0.14 2.22 6.78 42.57 0.29 2.51 16 3 C -0.17 -2.03 9.72 22.32 0.22 -1.81 16 4 C -0.03 -0.55 7.92 22.73 0.18 -0.37 16 5 C -0.20 -5.02 5.33 -19.99 -0.11 -5.12 16 6 C 0.58 18.45 6.53 86.79 0.57 19.01 16 7 O -0.58 -23.74 16.17 -3.87 -0.06 -23.80 16 8 N -0.61 -17.54 3.30 -813.02 -2.68 -20.22 16 9 C 0.09 1.75 6.75 86.76 0.59 2.33 16 10 C -0.11 -1.83 6.15 31.69 0.19 -1.63 16 11 C -0.08 -2.15 0.62 -51.89 -0.03 -2.18 16 12 C 0.13 4.60 5.60 86.35 0.48 5.09 16 13 C -0.09 -2.17 4.43 30.47 0.14 -2.04 16 14 C -0.14 -4.41 5.86 30.68 0.18 -4.23 16 15 C 0.12 4.92 4.20 86.34 0.36 5.29 16 16 N -0.62 -28.08 2.52 -699.98 -1.77 -29.84 16 17 C -0.24 -13.85 10.02 84.03 0.84 -13.01 16 18 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 19 C -0.04 -2.23 5.23 84.86 0.44 -1.78 16 20 N -0.96 -62.04 13.97 21.65 0.30 -61.73 16 21 Si 0.95 46.76 24.39 68.60 1.67 48.44 16 22 H -0.28 -13.02 6.64 99.48 0.66 -12.36 16 23 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 24 H -0.25 -11.48 6.74 99.48 0.67 -10.81 16 25 C 0.16 5.57 4.84 86.16 0.42 5.98 16 26 C 0.16 4.35 6.82 42.89 0.29 4.65 16 27 C -0.10 -2.74 9.01 71.24 0.64 -2.10 16 28 N -0.51 -11.93 10.17 -171.05 -1.74 -13.67 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.11 0.31 8.07 -2.39 -0.02 0.29 16 32 H 0.18 0.61 8.06 -2.91 -0.02 0.58 16 33 H 0.17 1.78 7.24 -2.91 -0.02 1.76 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.11 1.44 5.11 -2.39 -0.01 1.43 16 36 H 0.10 1.21 7.84 -2.39 -0.02 1.20 16 37 H 0.11 1.41 7.79 -2.39 -0.02 1.40 16 38 H 0.03 1.49 7.63 -2.38 -0.02 1.47 16 39 H 0.05 2.07 6.39 -2.39 -0.02 2.05 16 40 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.04 1.53 6.58 -2.39 -0.02 1.51 16 44 H 0.04 1.87 4.79 -2.39 -0.01 1.86 16 45 H 0.04 1.53 7.10 -2.39 -0.02 1.52 16 46 H 0.26 15.97 8.31 -92.71 -0.77 15.19 16 47 H 0.05 1.83 7.91 -2.39 -0.02 1.81 16 48 H 0.05 1.58 8.09 -2.39 -0.02 1.56 16 49 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 50 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.06 1.76 7.06 -2.39 -0.02 1.74 16 Total: -1.00 -81.06 388.16 2.99 -78.08 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.84 Total: 12.33 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 6.42 Total: 10.43 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -5.88 Total: -125.47 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.06 Total: -23.80 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.67 Total: 48.44 kcal Total: -81.06 2.99 -78.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040543624.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.668 kcal (2) G-P(sol) polarization free energy of solvation -81.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds