Wall clock time and date at job start Wed Apr 1 2020 01:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38149 * 119.54855 * 2 1 4 4 C 1.39822 * 119.00434 * 180.02562 * 3 2 1 5 5 C 1.48146 * 120.92678 * 179.97438 * 4 3 2 6 6 O 1.21514 * 120.00141 * 196.14332 * 5 4 3 7 7 N 1.34783 * 119.99641 * 16.42316 * 5 4 3 8 8 C 1.47485 * 125.66148 * 5.78538 * 7 5 4 9 9 C 1.55239 * 104.79028 * 155.92643 * 8 7 5 10 10 C 1.54512 * 101.43930 * 36.66341 * 9 8 7 11 11 C 1.47174 * 125.65972 * 186.08499 * 7 5 4 12 12 C 1.52268 * 110.20920 * 83.42071 * 10 9 8 13 13 C 1.53318 * 109.42346 * 182.20081 * 12 10 9 14 14 N 1.46928 * 108.70868 * 306.49686 * 13 12 10 15 15 C 1.36937 * 120.55958 * 234.25162 * 14 13 12 16 16 H 1.08001 * 119.99710 * 154.16845 * 15 14 13 17 17 C 1.38813 * 120.00018 * 334.15927 * 15 14 13 18 18 N 1.31614 * 120.00059 * 336.49427 * 17 15 14 19 19 Si 1.86801 * 119.99572 * 156.49521 * 17 15 14 20 20 H 1.48498 * 109.46916 * 94.66661 * 19 17 15 21 21 H 1.48500 * 109.46967 * 214.66301 * 19 17 15 22 22 H 1.48493 * 109.47322 * 334.66532 * 19 17 15 23 23 C 1.46928 * 118.87321 * 54.22596 * 14 13 12 24 24 C 1.52277 * 110.21143 * 206.61050 * 10 9 8 25 25 C 1.39817 * 118.14932 * 0.25742 * 4 3 2 26 26 C 1.38155 * 119.00476 * 359.49795 * 25 4 3 27 27 C 1.50702 * 119.55156 * 180.22667 * 26 25 4 28 28 N 1.31813 * 119.55441 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47409 * 89.99849 * 1 2 3 30 30 H 1.09006 * 109.46606 * 209.99831 * 1 2 3 31 31 H 1.09001 * 109.47131 * 329.98881 * 1 2 3 32 32 H 1.08001 * 120.50215 * 0.05404 * 3 2 1 33 33 H 1.08999 * 110.34978 * 274.87452 * 8 7 5 34 34 H 1.09001 * 110.35347 * 37.16172 * 8 7 5 35 35 H 1.08997 * 111.20120 * 278.57044 * 9 8 7 36 36 H 1.09007 * 110.94557 * 154.64087 * 9 8 7 37 37 H 1.08998 * 109.90843 * 300.84484 * 11 7 5 38 38 H 1.09001 * 109.90552 * 62.10525 * 11 7 5 39 39 H 1.09005 * 109.48359 * 302.18870 * 12 10 9 40 40 H 1.09001 * 109.48238 * 62.21874 * 12 10 9 41 41 H 1.08995 * 109.60053 * 186.72749 * 13 12 10 42 42 H 1.09003 * 109.59156 * 66.26173 * 13 12 10 43 43 H 0.97000 * 119.99837 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.59906 * 185.99338 * 23 14 13 45 45 H 1.09008 * 109.73035 * 65.60099 * 23 14 13 46 46 H 1.08999 * 109.48187 * 297.76761 * 24 10 9 47 47 H 1.09003 * 109.47993 * 57.79287 * 24 10 9 48 48 H 1.07998 * 120.49710 * 179.74610 * 25 4 3 49 49 H 1.08999 * 109.46900 * 270.28119 * 27 26 25 50 50 H 1.08996 * 109.47007 * 30.28694 * 27 26 25 51 51 H 1.09004 * 109.46634 * 150.28126 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1882 1.2018 0.0000 4 6 3.5864 1.1885 -0.0005 5 6 4.3598 2.4521 -0.0011 6 8 5.5391 2.4425 -0.2942 7 7 3.7568 3.6114 0.3289 8 6 2.3747 3.7511 0.8243 9 6 2.3704 5.0867 1.6156 10 6 3.3209 5.9532 0.7594 11 6 4.3662 4.9487 0.2488 12 6 2.5609 6.5749 -0.4044 13 6 3.5311 7.3852 -1.2721 14 7 4.2471 8.3389 -0.4139 15 6 4.2498 9.6758 -0.7099 16 1 4.3900 10.4027 0.0765 17 6 4.0726 10.0969 -2.0207 18 7 4.3587 9.2856 -3.0168 19 14 3.4281 11.8149 -2.3707 20 1 4.5709 12.7359 -2.5959 21 1 2.5707 11.7844 -3.5828 22 1 2.6303 12.2899 -1.2119 23 6 4.9595 7.8337 0.7677 24 6 3.9799 7.0209 1.6222 25 6 4.2343 -0.0505 -0.0066 26 6 3.4740 -1.2040 -0.0012 27 6 4.1596 -2.5460 -0.0024 28 7 2.1571 -1.1466 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.6491 2.1376 0.0009 33 1 1.6758 3.8001 -0.0107 34 1 2.1222 2.9200 1.4828 35 1 2.7662 4.9499 2.6219 36 1 1.3698 5.5181 1.6465 37 1 5.2569 4.9888 0.8756 38 1 4.6261 5.1767 -0.7850 39 1 2.1075 5.7865 -1.0052 40 1 1.7815 7.2326 -0.0196 41 1 2.9732 7.9276 -2.0354 42 1 4.2456 6.7127 -1.7469 43 1 4.2345 9.5797 -3.9328 44 1 5.3436 8.6719 1.3491 45 1 5.7868 7.1967 0.4541 46 1 3.2154 7.6834 2.0279 47 1 4.5199 6.5447 2.4406 48 1 5.3129 -0.1049 -0.0114 49 1 4.3244 -2.8688 -1.0304 50 1 5.1176 -2.4651 0.5111 51 1 3.5324 -3.2748 0.5112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040714980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:55 Heat of formation + Delta-G solvation = 29.794705 kcal Electronic energy + Delta-G solvation = -30740.092591 eV Core-core repulsion = 26832.993858 eV Total energy + Delta-G solvation = -3907.098733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.14100 -40.02930 -38.39144 -36.04272 -34.13328 -33.51689 -32.69366 -31.13684 -30.07381 -29.54034 -29.32664 -27.38841 -26.59734 -25.21615 -23.62710 -22.78796 -22.34260 -22.06345 -20.75880 -19.60270 -18.27557 -17.46595 -16.78134 -16.32260 -16.22810 -16.04591 -15.39574 -15.05958 -14.90185 -14.40968 -14.06817 -14.04677 -13.82131 -13.63520 -13.54068 -13.27624 -13.13786 -13.04220 -12.78935 -12.62560 -12.43516 -12.40899 -12.26583 -12.09556 -11.88586 -11.55336 -11.36714 -11.25723 -10.98872 -10.70736 -10.51566 -10.36630 -10.24481 -10.21747 -10.02813 -9.87680 -9.62944 -9.57045 -9.43574 -9.06232 -8.65127 -8.44027 -6.72697 -5.82575 -3.18812 0.53509 0.78931 2.73542 2.83622 3.35907 3.44214 3.46701 3.53159 3.85456 4.11884 4.34330 4.48578 4.49738 4.71974 4.73646 4.78040 4.89828 5.07709 5.13988 5.20291 5.24672 5.26016 5.26539 5.32034 5.32783 5.35565 5.37040 5.58864 5.62468 5.64394 5.74309 5.79714 5.80778 5.83506 5.89197 6.00648 6.04544 6.15827 6.20858 6.24808 6.37838 6.41255 6.54192 6.58929 6.68441 6.79017 6.93550 7.27445 7.42851 7.56668 7.68054 7.79252 8.03232 8.40373 9.17687 9.83235 10.39157 11.26208 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.002487 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.302993 B =11254.255831 C =11443.371973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.127 3.873 3 C -0.166 4.166 4 C -0.071 4.071 5 C 0.568 3.432 6 O -0.529 6.529 7 N -0.605 5.605 8 C 0.091 3.909 9 C -0.128 4.128 10 C -0.055 4.055 11 C 0.117 3.883 12 C -0.127 4.127 13 C 0.169 3.831 14 N -0.590 5.590 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.003 3.997 18 N -0.897 5.897 19 Si 0.895 3.105 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.142 3.858 24 C -0.117 4.117 25 C -0.124 4.124 26 C 0.127 3.873 27 C -0.103 4.103 28 N -0.474 5.474 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.019 0.981 43 H 0.253 0.747 44 H 0.055 0.945 45 H 0.019 0.981 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.146 0.854 49 H 0.080 0.920 50 H 0.077 0.923 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.781 -19.647 9.269 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.010 4.010 3 C -0.186 4.186 4 C -0.082 4.082 5 C 0.356 3.644 6 O -0.406 6.406 7 N -0.338 5.338 8 C -0.031 4.031 9 C -0.166 4.166 10 C -0.056 4.056 11 C -0.004 4.004 12 C -0.166 4.166 13 C 0.043 3.957 14 N -0.312 5.312 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.540 5.540 19 Si 0.725 3.275 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.204 1.204 23 C 0.016 3.984 24 C -0.157 4.157 25 C -0.145 4.145 26 C -0.011 4.011 27 C -0.160 4.160 28 N -0.186 5.186 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.174 0.826 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.163 0.837 49 H 0.098 0.902 50 H 0.096 0.904 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.559 -20.419 8.907 23.524 hybrid contribution 0.159 1.703 -0.386 1.753 sum -7.400 -18.716 8.522 21.855 Atomic orbital electron populations 1.20734 0.88286 1.03678 1.03405 1.21261 0.97160 0.87742 0.94868 1.22912 0.93924 1.00906 1.00836 1.20341 0.93829 0.94032 1.00008 1.17821 0.86345 0.82257 0.77983 1.90796 1.15062 1.86010 1.48754 1.48461 1.14682 1.06590 1.64100 1.22830 0.83587 0.98947 0.97781 1.22981 1.01046 0.93995 0.98612 1.20989 0.94406 0.93995 0.96234 1.22237 0.96230 0.79039 1.02935 1.22098 0.99274 0.98868 0.96357 1.20802 0.92315 0.90567 0.91969 1.44059 1.56621 1.04030 1.26532 1.19146 1.45406 0.82203 0.91656 0.91618 1.24938 1.01319 0.97487 0.95847 1.70116 1.49071 1.36558 0.98296 0.86397 0.78953 0.84669 0.77508 1.21511 1.21575 1.20442 1.20947 0.92340 0.95862 0.89265 1.21919 0.99821 0.96863 0.97083 1.22076 1.02105 0.91144 0.99177 1.21249 0.89128 0.95701 0.95000 1.20723 0.99878 0.92026 1.03362 1.67208 1.09664 1.29656 1.12026 0.90140 0.90304 0.90420 0.82630 0.90617 0.90312 0.90691 0.89616 0.91232 0.90003 0.93276 0.91987 0.89680 0.96261 0.93661 0.92670 0.96359 0.91635 0.92881 0.83650 0.90165 0.90435 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.16 36.00 0.37 -0.35 16 2 C 0.13 1.30 6.78 -82.64 -0.56 0.74 16 3 C -0.17 -1.77 7.88 -39.02 -0.31 -2.07 16 4 C -0.07 -0.92 5.82 -104.65 -0.61 -1.53 16 5 C 0.57 8.87 7.76 -12.19 -0.09 8.77 16 6 O -0.53 -10.12 16.89 5.35 0.09 -10.03 16 7 N -0.61 -8.65 3.33 -171.53 -0.57 -9.22 16 8 C 0.09 0.97 4.62 -2.32 -0.01 0.96 16 9 C -0.13 -1.43 6.00 -24.75 -0.15 -1.57 16 10 C -0.06 -0.83 0.53 -154.10 -0.08 -0.91 16 11 C 0.12 1.90 5.07 -3.31 -0.02 1.88 16 12 C -0.13 -2.18 4.78 -26.94 -0.13 -2.31 16 13 C 0.17 3.84 5.09 -3.64 -0.02 3.82 16 14 N -0.59 -14.21 2.99 -172.16 -0.51 -14.72 16 15 C -0.25 -6.84 9.55 -15.06 -0.14 -6.98 16 16 H 0.07 1.74 7.92 -52.49 -0.42 1.32 16 17 C 0.00 0.08 4.75 -17.43 -0.08 0.00 16 18 N -0.90 -25.83 11.45 55.49 0.64 -25.20 16 19 Si 0.90 21.34 29.61 -169.99 -5.03 16.30 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 C 0.14 2.86 6.24 -3.65 -0.02 2.84 16 24 C -0.12 -1.86 4.70 -26.94 -0.13 -1.99 16 25 C -0.12 -1.48 9.31 -39.02 -0.36 -1.85 16 26 C 0.13 1.36 6.78 -82.63 -0.56 0.80 16 27 C -0.10 -0.76 10.16 36.01 0.37 -0.39 16 28 N -0.47 -5.40 10.16 -5.79 -0.06 -5.46 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.16 1.38 4.03 -52.49 -0.21 1.17 16 33 H 0.08 0.73 6.66 -51.93 -0.35 0.38 16 34 H 0.08 0.70 6.43 -51.93 -0.33 0.36 16 35 H 0.07 0.79 8.01 -51.93 -0.42 0.37 16 36 H 0.09 0.84 8.01 -51.92 -0.42 0.43 16 37 H 0.07 1.18 7.59 -51.93 -0.39 0.78 16 38 H 0.08 1.56 6.07 -51.93 -0.32 1.25 16 39 H 0.05 0.77 7.47 -51.93 -0.39 0.38 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 2.19 6.06 -51.93 -0.31 1.88 16 42 H 0.02 0.47 6.53 -51.93 -0.34 0.13 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.05 1.10 7.92 -51.93 -0.41 0.69 16 45 H 0.02 0.38 7.47 -51.92 -0.39 0.00 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 48 H 0.15 1.65 7.82 -52.49 -0.41 1.24 16 49 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 51 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -32.50 391.16 -10.13 -42.63 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.03 Total: -0.07 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.54 Total: -0.13 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.51 Total: -54.60 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.50 -10.13 -42.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040714980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.422 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds