Wall clock time and date at job start Wed Apr 1 2020 03:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38628 * 120.75835 * 2 1 4 4 C 1.38552 * 119.35837 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.55286 * 179.97438 * 4 3 2 6 6 N 1.31525 * 120.90190 * 359.74777 * 4 3 2 7 7 C 1.32716 * 121.64014 * 0.52525 * 6 4 3 8 8 C 1.48176 * 119.72341 * 179.75386 * 7 6 4 9 9 O 1.21516 * 119.99595 * 179.72285 * 8 7 6 10 10 N 1.34775 * 120.00041 * 359.72340 * 8 7 6 11 11 C 1.47492 * 125.66032 * 0.02562 * 10 8 7 12 12 C 1.55016 * 104.98929 * 204.07035 * 11 10 8 13 13 C 1.54535 * 101.52736 * 323.55408 * 12 11 10 14 14 C 1.47436 * 125.80532 * 180.02562 * 10 8 7 15 15 C 1.52272 * 110.16452 * 276.40683 * 13 12 11 16 16 C 1.53316 * 109.41946 * 297.16607 * 15 13 12 17 17 N 1.46924 * 108.70676 * 306.49484 * 16 15 13 18 18 C 1.36943 * 120.56004 * 234.25469 * 17 16 15 19 19 H 1.08002 * 119.99810 * 27.90821 * 18 17 16 20 20 C 1.38806 * 120.00116 * 207.91491 * 18 17 16 21 21 N 1.31623 * 119.99769 * 17.45266 * 20 18 17 22 22 Si 1.86792 * 120.00354 * 197.44911 * 20 18 17 23 23 H 1.48504 * 109.47077 * 59.99688 * 22 20 18 24 24 H 1.48496 * 109.47561 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47115 * 300.00217 * 22 20 18 26 26 C 1.46930 * 118.87821 * 54.22862 * 17 16 15 27 27 C 1.52272 * 110.15607 * 153.28045 * 13 12 11 28 28 C 1.38596 * 120.75963 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46828 * 269.97388 * 1 2 3 30 30 H 1.08997 * 109.47275 * 29.97718 * 1 2 3 31 31 H 1.08996 * 109.46796 * 149.97649 * 1 2 3 32 32 H 1.08009 * 120.31869 * 0.04528 * 3 2 1 33 33 H 1.09005 * 109.46571 * 90.00028 * 5 4 3 34 34 H 1.08994 * 109.47262 * 210.00271 * 5 4 3 35 35 H 1.08994 * 109.47006 * 330.00837 * 5 4 3 36 36 H 1.08998 * 110.35031 * 85.16248 * 11 10 8 37 37 H 1.08995 * 110.35284 * 322.97559 * 11 10 8 38 38 H 1.09000 * 111.01402 * 81.61937 * 12 11 10 39 39 H 1.08999 * 111.00922 * 205.49561 * 12 11 10 40 40 H 1.09003 * 109.88586 * 59.09179 * 14 10 8 41 41 H 1.08999 * 110.05699 * 297.93449 * 14 10 8 42 42 H 1.08999 * 109.47924 * 57.15084 * 15 13 12 43 43 H 1.09002 * 109.47659 * 177.18564 * 15 13 12 44 44 H 1.08998 * 109.59898 * 186.72115 * 16 15 13 45 45 H 1.08999 * 109.59445 * 66.25764 * 16 15 13 46 46 H 0.97000 * 120.00193 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.59711 * 185.99981 * 26 17 16 48 48 H 1.09004 * 109.72874 * 65.60519 * 26 17 16 49 49 H 1.09003 * 109.48209 * 182.81089 * 27 13 12 50 50 H 1.09004 * 109.48243 * 302.83764 * 27 13 12 51 51 H 1.08000 * 120.46515 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2160 1.1913 0.0000 4 6 3.6011 1.1574 -0.0005 5 6 4.3762 2.4498 -0.0011 6 7 4.2488 0.0127 0.0039 7 6 3.6083 -1.1496 -0.0013 8 6 4.3807 -2.4141 -0.0015 9 8 3.7993 -3.4812 -0.0011 10 7 5.7281 -2.3807 -0.0020 11 6 6.5579 -1.1614 -0.0019 12 6 7.9135 -1.5991 -0.6133 13 6 8.0629 -3.0274 -0.0427 14 6 6.6200 -3.5547 -0.0028 15 6 8.6541 -2.9734 1.3595 16 6 10.0626 -2.3711 1.2960 17 7 10.8537 -3.1251 0.3140 18 6 12.0579 -3.6749 0.6646 19 1 12.2418 -3.9639 1.6889 20 6 13.0421 -3.8606 -0.2964 21 7 12.9730 -3.2165 -1.4422 22 14 14.4648 -5.0244 0.0364 23 1 13.9391 -6.3917 0.2805 24 1 15.3721 -5.0460 -1.1389 25 1 15.2137 -4.5614 1.2322 26 6 10.3306 -3.2798 -1.0503 27 6 8.9205 -3.8764 -0.9714 28 6 2.2158 -1.1910 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6936 2.1366 0.0007 33 1 4.5634 2.7616 1.0265 34 1 5.3260 2.3036 -0.5153 35 1 3.7996 3.2190 -0.5147 36 1 6.7004 -0.8000 1.0165 37 1 6.0965 -0.3888 -0.6168 38 1 7.8639 -1.6162 -1.7021 39 1 8.7230 -0.9546 -0.2706 40 1 6.4246 -4.1682 -0.8824 41 1 6.4645 -4.1429 0.9017 42 1 8.0224 -2.3544 1.9966 43 1 8.7081 -3.9816 1.7703 44 1 10.5342 -2.4401 2.2762 45 1 10.0000 -1.3266 0.9906 46 1 13.6606 -3.3466 -2.1139 47 1 10.9792 -3.9480 -1.6169 48 1 10.2893 -2.3073 -1.5410 49 1 8.9774 -4.8940 -0.5847 50 1 8.4752 -3.8900 -1.9663 51 1 1.6959 -2.1376 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040757515.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:11 Heat of formation + Delta-G solvation = 23.690875 kcal Electronic energy + Delta-G solvation = -30616.837151 eV Core-core repulsion = 26709.473736 eV Total energy + Delta-G solvation = -3907.363415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.04016 -39.88176 -38.30795 -35.84744 -34.58534 -33.28632 -32.72605 -30.86738 -29.98246 -29.23640 -28.37881 -27.91387 -27.13187 -24.87714 -23.57716 -22.76795 -22.12646 -21.47632 -20.83552 -19.55373 -18.17331 -17.41866 -16.70258 -16.42529 -16.12776 -15.81129 -15.60757 -14.94523 -14.81841 -14.35882 -14.05786 -13.94956 -13.72279 -13.48820 -13.41022 -13.23624 -13.09163 -12.98415 -12.74392 -12.64665 -12.54590 -12.41194 -12.20977 -12.11288 -11.90380 -11.41918 -11.22898 -11.02220 -10.72301 -10.65454 -10.41699 -10.38426 -10.19629 -10.06430 -9.85913 -9.79548 -9.48565 -9.40257 -9.35588 -9.28065 -8.48803 -8.40113 -6.62921 -5.76372 -3.17952 0.42361 0.87866 2.63335 2.94435 3.40200 3.46025 3.47653 3.61486 3.81306 4.20855 4.31069 4.52241 4.64482 4.73135 4.81647 4.95772 4.99565 5.05694 5.10871 5.19973 5.23121 5.30260 5.34735 5.41397 5.44632 5.47833 5.55990 5.66542 5.74129 5.76576 5.81674 5.88793 5.94414 6.03416 6.12024 6.17023 6.21696 6.29447 6.35382 6.39983 6.48124 6.58977 6.68956 6.73817 6.80484 6.89523 7.02188 7.40268 7.48439 7.60693 7.69835 7.82229 8.14189 8.48313 9.24545 9.88288 10.44822 11.31899 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025664 B = 0.002367 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.744286 B =11825.583761 C =12420.807542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.046 4.046 3 C -0.156 4.156 4 C 0.128 3.872 5 C -0.105 4.105 6 N -0.455 5.455 7 C 0.097 3.903 8 C 0.578 3.422 9 O -0.543 6.543 10 N -0.591 5.591 11 C 0.104 3.896 12 C -0.127 4.127 13 C -0.056 4.056 14 C 0.114 3.886 15 C -0.119 4.119 16 C 0.147 3.853 17 N -0.591 5.591 18 C -0.251 4.251 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.174 3.826 27 C -0.126 4.126 28 C -0.122 4.122 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.020 0.980 46 H 0.254 0.746 47 H 0.087 0.913 48 H 0.020 0.980 49 H 0.056 0.944 50 H 0.050 0.950 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.223 11.171 1.831 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.054 4.054 3 C -0.176 4.176 4 C -0.012 4.012 5 C -0.162 4.162 6 N -0.169 5.169 7 C -0.041 4.041 8 C 0.365 3.635 9 O -0.421 6.421 10 N -0.322 5.322 11 C -0.018 4.018 12 C -0.165 4.165 13 C -0.057 4.057 14 C -0.008 4.008 15 C -0.158 4.158 16 C 0.021 3.979 17 N -0.314 5.314 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.048 3.952 27 C -0.166 4.166 28 C -0.143 4.143 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.155 0.845 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.038 0.962 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.038 0.962 49 H 0.075 0.925 50 H 0.069 0.931 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.542 10.562 1.704 24.952 hybrid contribution -0.166 -0.620 0.150 0.659 sum -22.708 9.942 1.854 24.858 Atomic orbital electron populations 1.20834 0.89680 1.03595 1.03131 1.20339 0.97083 0.92509 0.95495 1.22054 0.94829 0.98818 1.01887 1.21417 0.91207 0.94049 0.94528 1.20750 1.00541 0.91463 1.03451 1.67731 1.39967 0.97544 1.11616 1.21101 0.91525 0.92033 0.99443 1.17508 0.80917 0.87361 0.77747 1.90773 1.69308 1.30189 1.51816 1.48475 1.04240 1.09769 1.69738 1.22744 0.90270 0.87148 1.01653 1.22952 0.96338 0.96787 1.00408 1.20974 0.91853 0.95509 0.97319 1.22258 0.89039 0.87631 1.01846 1.21921 0.98460 1.01261 0.94143 1.20941 0.89750 0.93450 0.93806 1.44030 1.19401 1.60334 1.07590 1.19138 0.90161 1.33614 0.95168 0.91849 1.25015 0.97302 0.99701 0.97644 1.70021 1.35182 1.41705 1.07812 0.86392 0.82062 0.81380 0.77070 1.21086 1.21693 1.20942 1.20778 0.89359 0.98302 0.86774 1.22116 0.98872 0.98985 0.96611 1.21967 0.93712 0.99535 0.99085 0.90287 0.90816 0.90699 0.84458 0.90092 0.89961 0.90601 0.91643 0.88180 0.91070 0.89025 0.91396 0.91497 0.93133 0.92180 0.92919 0.96198 0.93640 0.89510 0.96188 0.92482 0.93129 0.83589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.06 36.01 0.36 -0.25 16 2 C -0.05 -0.39 5.91 -104.35 -0.62 -1.01 16 3 C -0.16 -1.22 9.45 -39.32 -0.37 -1.59 16 4 C 0.13 1.20 6.78 -82.61 -0.56 0.64 16 5 C -0.10 -0.68 10.17 36.01 0.37 -0.31 16 6 N -0.46 -5.52 6.51 -6.06 -0.04 -5.56 16 7 C 0.10 1.30 6.72 -83.01 -0.56 0.74 16 8 C 0.58 9.22 7.85 -12.18 -0.10 9.13 16 9 O -0.54 -9.95 16.66 5.35 0.09 -9.86 16 10 N -0.59 -9.12 3.34 -171.45 -0.57 -9.69 16 11 C 0.10 1.44 5.61 -2.43 -0.01 1.43 16 12 C -0.13 -1.93 4.92 -24.86 -0.12 -2.05 16 13 C -0.06 -0.92 0.55 -154.09 -0.09 -1.01 16 14 C 0.11 1.82 6.07 -3.18 -0.02 1.80 16 15 C -0.12 -2.04 4.74 -26.94 -0.13 -2.17 16 16 C 0.15 2.98 6.19 -3.65 -0.02 2.96 16 17 N -0.59 -14.44 2.98 -172.16 -0.51 -14.95 16 18 C -0.25 -6.82 9.57 -15.06 -0.14 -6.96 16 19 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 20 C 0.00 0.05 4.90 -17.43 -0.09 -0.03 16 21 N -0.90 -25.92 11.20 55.49 0.62 -25.30 16 22 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.17 4.02 5.03 -3.64 -0.02 4.00 16 27 C -0.13 -2.37 4.72 -26.94 -0.13 -2.50 16 28 C -0.12 -1.36 9.34 -39.05 -0.36 -1.73 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 31 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 32 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 36 H 0.07 0.90 7.74 -51.93 -0.40 0.49 16 37 H 0.10 1.33 5.89 -51.93 -0.31 1.02 16 38 H 0.07 1.09 8.01 -51.93 -0.42 0.67 16 39 H 0.09 1.47 6.08 -51.93 -0.32 1.15 16 40 H 0.07 1.10 7.78 -51.93 -0.40 0.70 16 41 H 0.07 1.08 7.83 -51.93 -0.41 0.68 16 42 H 0.05 0.79 7.47 -51.93 -0.39 0.40 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 45 H 0.02 0.40 6.47 -51.93 -0.34 0.07 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.09 2.29 6.02 -51.93 -0.31 1.98 16 48 H 0.02 0.48 7.56 -51.93 -0.39 0.09 16 49 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.05 0.88 8.11 -51.93 -0.42 0.46 16 51 H 0.15 1.58 7.64 -52.49 -0.40 1.18 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -31.70 393.96 -10.37 -42.08 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -8.26 Total: -0.37 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.60 Total: 1.08 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.50 Total: -55.50 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.70 -10.37 -42.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040757515.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.767 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds