Wall clock time and date at job start Wed Apr 1 2020 02:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38229 * 120.42066 * 2 1 4 4 N 1.31858 * 120.76640 * 180.02562 * 3 2 1 5 5 C 1.31884 * 121.72339 * 0.02562 * 4 3 2 6 6 C 1.38181 * 120.76415 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.41629 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47323 * 89.99950 * 7 6 5 9 9 O 1.21281 * 119.99963 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99936 * 179.97438 * 8 7 6 11 11 C 1.47085 * 125.62949 * 359.97438 * 10 8 7 12 12 C 1.54458 * 107.29382 * 179.03003 * 11 10 8 13 13 C 1.54392 * 102.87627 * 338.50230 * 12 11 10 14 14 C 1.47578 * 125.62627 * 180.02562 * 10 8 7 15 15 C 1.52109 * 110.50542 * 152.63370 * 13 12 11 16 16 C 1.53335 * 109.44618 * 64.08401 * 15 13 12 17 17 N 1.46932 * 108.68404 * 53.29776 * 16 15 13 18 18 C 1.36942 * 120.54750 * 125.63838 * 17 16 15 19 19 H 1.08008 * 119.99763 * 208.25660 * 18 17 16 20 20 C 1.38809 * 120.00444 * 28.25910 * 18 17 16 21 21 N 1.31624 * 119.99692 * 17.61693 * 20 18 17 22 22 Si 1.86801 * 120.00119 * 197.61824 * 20 18 17 23 23 H 1.48498 * 109.46957 * 94.05425 * 22 20 18 24 24 H 1.48496 * 109.47003 * 214.04983 * 22 20 18 25 25 H 1.48500 * 109.47058 * 334.05442 * 22 20 18 26 26 C 1.46938 * 118.90029 * 305.65539 * 17 16 15 27 27 C 1.52106 * 110.50783 * 276.65340 * 13 12 11 28 28 C 1.38626 * 120.41935 * 180.29468 * 2 1 3 29 29 H 1.09000 * 109.46727 * 89.99996 * 1 2 3 30 30 H 1.08995 * 109.47298 * 210.00278 * 1 2 3 31 31 H 1.09002 * 109.46764 * 330.00010 * 1 2 3 32 32 H 1.07997 * 119.61882 * 0.04177 * 3 2 1 33 33 H 1.07995 * 119.61783 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.47259 * 330.00083 * 7 6 5 35 35 H 1.09007 * 109.47144 * 210.00210 * 7 6 5 36 36 H 1.08999 * 109.87385 * 59.60935 * 11 10 8 37 37 H 1.09000 * 110.00052 * 298.52624 * 11 10 8 38 38 H 1.09003 * 110.73218 * 220.15173 * 12 11 10 39 39 H 1.09012 * 110.73186 * 96.84626 * 12 11 10 40 40 H 1.08999 * 110.37921 * 84.47263 * 14 10 8 41 41 H 1.09007 * 110.37360 * 322.12593 * 14 10 8 42 42 H 1.08998 * 109.47323 * 184.08018 * 15 13 12 43 43 H 1.08999 * 109.47235 * 304.09202 * 15 13 12 44 44 H 1.08996 * 109.60395 * 173.05661 * 16 15 13 45 45 H 1.08999 * 109.60237 * 293.54179 * 16 15 13 46 46 H 0.96998 * 119.99422 * 180.02562 * 21 20 18 47 47 H 1.08998 * 109.59908 * 294.58829 * 26 17 16 48 48 H 1.08995 * 109.73169 * 174.18651 * 26 17 16 49 49 H 1.08998 * 109.47890 * 55.91284 * 27 13 12 50 50 H 1.09004 * 109.47067 * 175.92263 * 27 13 12 51 51 H 1.07999 * 120.78968 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.1999 -0.0005 5 6 4.2257 0.0823 -0.0015 6 6 3.5948 -1.1470 -0.0026 7 6 4.4027 -2.4192 -0.0044 8 6 4.6726 -2.8448 1.4158 9 8 4.2501 -2.1808 2.3386 10 7 5.3826 -3.9640 1.6605 11 6 5.9499 -4.8590 0.6404 12 6 6.6962 -5.9884 1.3842 13 6 6.9696 -5.3654 2.7702 14 6 5.7182 -4.4943 2.9962 15 6 7.0683 -6.4502 3.8318 16 6 8.2772 -7.3458 3.5357 17 7 9.4680 -6.4970 3.3929 18 6 10.5860 -6.7337 4.1475 19 1 11.2502 -5.9198 4.3987 20 6 10.8657 -8.0194 4.5896 21 7 10.2819 -9.0526 4.0203 22 14 12.0705 -8.2834 5.9925 23 1 11.3267 -8.3638 7.2752 24 1 12.8166 -9.5484 5.7728 25 1 13.0260 -7.1477 6.0447 26 6 9.4393 -5.3898 2.4273 27 6 8.2237 -4.5056 2.7299 28 6 2.2089 -1.1954 -0.0061 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6676 2.1276 0.0007 33 1 5.3047 0.1285 -0.0015 34 1 5.3486 -2.2482 -0.5184 35 1 3.8459 -3.2025 -0.5189 36 1 6.6467 -4.3072 0.0095 37 1 5.1519 -5.2815 0.0297 38 1 7.6310 -6.2311 0.8790 39 1 6.0651 -6.8725 1.4762 40 1 4.8981 -5.1004 3.3810 41 1 5.9429 -3.6782 3.6830 42 1 7.1889 -5.9893 4.8122 43 1 6.1594 -7.0518 3.8223 44 1 8.4238 -8.0460 4.3581 45 1 8.1070 -7.8956 2.6101 46 1 10.4770 -9.9510 4.3295 47 1 9.3588 -5.7886 1.4161 48 1 10.3516 -4.8002 2.5163 49 1 8.1213 -3.7497 1.9513 50 1 8.3605 -4.0172 3.6948 51 1 1.6888 -2.1419 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040790549.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:09 Heat of formation + Delta-G solvation = 14.113707 kcal Electronic energy + Delta-G solvation = -30100.498510 eV Core-core repulsion = 26192.719798 eV Total energy + Delta-G solvation = -3907.778712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.81569 -40.17021 -38.49986 -35.90177 -33.89929 -33.80197 -33.07885 -31.05173 -30.06316 -29.48431 -28.70233 -27.58242 -26.64831 -24.13585 -23.46499 -23.05999 -22.26279 -21.73119 -20.80028 -19.31093 -18.10955 -17.23320 -17.17734 -16.98918 -16.39217 -16.06375 -15.42020 -14.88930 -14.63809 -14.54927 -14.29557 -14.01827 -13.69758 -13.52560 -13.48231 -13.29275 -13.12563 -13.07275 -12.85927 -12.81507 -12.72761 -12.52550 -12.33358 -12.03452 -11.70485 -11.52931 -11.33111 -11.12001 -10.79099 -10.72225 -10.49379 -10.28429 -10.15791 -10.08972 -9.86647 -9.75628 -9.66749 -9.57953 -9.43694 -9.02135 -8.61916 -8.47787 -6.68508 -5.81706 -3.23642 0.84792 1.05702 2.56231 2.94320 3.36375 3.44039 3.44955 3.58499 4.14137 4.38719 4.44306 4.45899 4.48220 4.69716 4.70156 4.73273 4.81571 4.90028 5.01468 5.07463 5.16538 5.21839 5.26001 5.35250 5.37005 5.40012 5.47824 5.53452 5.63804 5.67049 5.77823 5.89706 5.91639 5.93610 5.99478 6.01994 6.12200 6.13504 6.27513 6.31047 6.47459 6.49672 6.60026 6.65197 6.69905 6.81888 6.94670 7.32753 7.50425 7.62190 7.76183 7.78241 8.10744 8.43116 9.19329 9.82653 10.38920 11.26592 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.031274 B = 0.002029 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.094282 B =13796.987461 C =14021.589747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.138 4.138 3 C 0.094 3.906 4 N -0.480 5.480 5 C 0.107 3.893 6 C -0.110 4.110 7 C -0.094 4.094 8 C 0.527 3.473 9 O -0.539 6.539 10 N -0.614 5.614 11 C 0.100 3.900 12 C -0.123 4.123 13 C -0.055 4.055 14 C 0.114 3.886 15 C -0.127 4.127 16 C 0.174 3.826 17 N -0.591 5.591 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.147 3.853 27 C -0.117 4.117 28 C -0.064 4.064 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.087 0.913 45 H 0.020 0.980 46 H 0.253 0.747 47 H 0.019 0.981 48 H 0.053 0.947 49 H 0.049 0.951 50 H 0.059 0.941 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.461 12.250 -11.873 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C -0.063 4.063 4 N -0.188 5.188 5 C -0.050 4.050 6 C -0.112 4.112 7 C -0.135 4.135 8 C 0.315 3.685 9 O -0.416 6.416 10 N -0.348 5.348 11 C -0.023 4.023 12 C -0.160 4.160 13 C -0.056 4.056 14 C -0.008 4.008 15 C -0.166 4.166 16 C 0.048 3.952 17 N -0.313 5.313 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.021 3.979 27 C -0.156 4.156 28 C -0.089 4.089 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.105 0.895 45 H 0.038 0.962 46 H 0.063 0.937 47 H 0.037 0.963 48 H 0.071 0.929 49 H 0.068 0.932 50 H 0.078 0.922 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.235 13.313 -11.365 24.565 hybrid contribution 0.185 -1.161 0.725 1.381 sum -17.050 12.152 -10.640 23.486 Atomic orbital electron populations 1.20713 0.90197 1.03240 1.02478 1.20893 0.97564 0.94073 1.01474 1.22650 0.90008 0.97406 0.96254 1.67677 1.08349 1.31050 1.11682 1.22576 1.00207 0.87073 0.95112 1.20303 0.94277 0.95469 1.01131 1.20580 1.01782 0.95844 0.95287 1.20059 0.77941 0.79506 0.90949 1.90733 1.51312 1.53226 1.46314 1.48598 1.53116 1.24185 1.08874 1.22164 0.97178 0.91782 0.91195 1.22707 1.00952 0.96428 0.95937 1.21001 0.93545 0.95517 0.95513 1.22392 0.96911 0.97376 0.84145 1.22046 1.00445 0.96881 0.97278 1.20782 0.82741 0.91285 1.00417 1.44039 1.11720 1.32768 1.42817 1.19200 1.01793 0.92106 1.25021 0.91766 1.25027 0.98893 0.95591 1.00113 1.70033 1.46234 0.97660 1.40743 0.86294 0.80710 0.77280 0.82616 1.21488 1.21815 1.20413 1.20935 0.94870 0.89899 0.92238 1.21822 0.95434 0.97341 1.00986 1.21312 0.93247 0.98270 0.96117 0.90933 0.91307 0.91130 0.82974 0.83006 0.87542 0.87844 0.91413 0.91705 0.89027 0.90682 0.91740 0.90699 0.92382 0.93041 0.89509 0.96197 0.93677 0.96343 0.92885 0.93245 0.92215 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.04 36.01 0.36 -0.29 16 2 C -0.14 -1.25 5.90 -104.48 -0.62 -1.87 16 3 C 0.09 0.94 10.86 -17.54 -0.19 0.75 16 4 N -0.48 -5.86 10.36 -13.25 -0.14 -5.99 16 5 C 0.11 1.22 10.86 -17.55 -0.19 1.03 16 6 C -0.11 -1.15 4.39 -104.48 -0.46 -1.61 16 7 C -0.09 -0.85 5.05 -29.04 -0.15 -0.99 16 8 C 0.53 6.86 7.84 -10.99 -0.09 6.78 16 9 O -0.54 -9.27 16.30 5.56 0.09 -9.18 16 10 N -0.61 -7.70 3.32 -170.74 -0.57 -8.27 16 11 C 0.10 1.03 6.11 -2.96 -0.02 1.01 16 12 C -0.12 -1.58 4.92 -25.24 -0.12 -1.71 16 13 C -0.05 -0.83 0.55 -154.09 -0.08 -0.91 16 14 C 0.11 1.62 5.82 -2.86 -0.02 1.61 16 15 C -0.13 -2.23 4.84 -27.01 -0.13 -2.36 16 16 C 0.17 3.85 5.06 -3.63 -0.02 3.83 16 17 N -0.59 -14.02 2.98 -172.13 -0.51 -14.53 16 18 C -0.25 -6.71 9.57 -15.06 -0.14 -6.85 16 19 H 0.06 1.71 7.89 -52.48 -0.41 1.29 16 20 C 0.00 0.06 4.90 -17.43 -0.09 -0.02 16 21 N -0.90 -25.42 11.23 55.49 0.62 -24.79 16 22 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.15 2.88 6.20 -3.63 -0.02 2.86 16 27 C -0.12 -1.91 4.86 -27.01 -0.13 -2.05 16 28 C -0.06 -0.62 9.55 -39.28 -0.37 -0.99 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.11 0.75 8.09 -51.93 -0.42 0.33 16 35 H 0.10 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.29 6.17 -51.93 -0.32 0.97 16 39 H 0.07 0.94 7.98 -51.92 -0.41 0.53 16 40 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 41 H 0.07 1.18 7.94 -51.93 -0.41 0.77 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 44 H 0.09 2.22 6.04 -51.93 -0.31 1.90 16 45 H 0.02 0.46 7.62 -51.93 -0.40 0.06 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.59 16 47 H 0.02 0.36 6.55 -51.93 -0.34 0.02 16 48 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 49 H 0.05 0.73 7.82 -51.93 -0.41 0.32 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 399.99 15.07 6.03 6.03 Total: -1.00 -32.52 399.99 -10.44 -42.97 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -8.46 Total: -0.81 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.48 Total: -1.78 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.59 Total: -53.59 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.52 -10.44 -42.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040790549.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.083 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds