Wall clock time and date at job start Wed Apr 1 2020 01:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31879 * 119.61910 * 2 1 4 4 C 1.31855 * 121.72511 * 179.97438 * 3 2 1 5 5 C 1.38218 * 120.76635 * 0.02562 * 4 3 2 6 6 C 1.38625 * 119.16040 * 359.77049 * 5 4 3 7 7 C 1.38185 * 119.61545 * 180.02562 * 2 1 3 8 8 C 1.50697 * 120.41976 * 359.97438 * 7 2 1 9 9 C 1.50706 * 109.47336 * 84.99699 * 8 7 2 10 10 O 1.21284 * 119.99530 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99892 * 180.02562 * 9 8 7 12 12 C 1.47079 * 125.63160 * 359.97227 * 11 9 8 13 13 C 1.54464 * 107.30050 * 179.04628 * 12 11 9 14 14 C 1.54399 * 102.86726 * 338.50126 * 13 12 11 15 15 C 1.47574 * 125.62492 * 180.02562 * 11 9 8 16 16 C 1.52101 * 110.51527 * 276.65428 * 14 13 12 17 17 C 1.53341 * 109.44571 * 295.89301 * 16 14 13 18 18 N 1.46936 * 108.69252 * 306.70941 * 17 16 14 19 19 C 1.36942 * 120.55198 * 234.32832 * 18 17 16 20 20 H 1.07991 * 120.00045 * 27.98873 * 19 18 17 21 21 C 1.38816 * 119.99281 * 207.98168 * 19 18 17 22 22 N 1.31617 * 120.00238 * 17.47729 * 21 19 18 23 23 Si 1.86799 * 119.99500 * 197.47271 * 21 19 18 24 24 H 1.48492 * 109.47268 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47013 * 120.00790 * 23 21 19 26 26 H 1.48503 * 109.47367 * 240.00238 * 23 21 19 27 27 C 1.46932 * 118.88721 * 54.35259 * 18 17 16 28 28 C 1.52114 * 110.50054 * 152.62299 * 14 13 12 29 29 H 1.09005 * 109.47518 * 269.97961 * 1 2 3 30 30 H 1.08999 * 109.47291 * 29.97917 * 1 2 3 31 31 H 1.09005 * 109.47119 * 149.98230 * 1 2 3 32 32 H 1.08010 * 119.61748 * 179.97438 * 4 3 2 33 33 H 1.08006 * 120.41817 * 180.02562 * 5 4 3 34 34 H 1.08005 * 120.78909 * 180.23565 * 6 5 4 35 35 H 1.09003 * 109.46810 * 324.99602 * 8 7 2 36 36 H 1.08999 * 109.47127 * 205.00001 * 8 7 2 37 37 H 1.09006 * 109.87491 * 59.62493 * 12 11 9 38 38 H 1.09000 * 110.00418 * 298.54567 * 12 11 9 39 39 H 1.08997 * 110.73370 * 220.15629 * 13 12 11 40 40 H 1.08995 * 110.73053 * 96.84704 * 13 12 11 41 41 H 1.08993 * 110.38150 * 84.45472 * 15 11 9 42 42 H 1.09010 * 110.37556 * 322.10043 * 15 11 9 43 43 H 1.08994 * 109.47616 * 55.88334 * 16 14 13 44 44 H 1.09003 * 109.47412 * 175.90276 * 16 14 13 45 45 H 1.09010 * 109.60024 * 186.95099 * 17 16 14 46 46 H 1.08998 * 109.60533 * 66.47603 * 17 16 14 47 47 H 0.97005 * 119.99851 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.59848 * 185.87934 * 27 18 17 49 49 H 1.09002 * 109.73704 * 65.48408 * 27 18 17 50 50 H 1.08994 * 109.46952 * 184.09450 * 28 14 13 51 51 H 1.09001 * 109.47627 * 304.10729 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1949 0.0005 5 6 4.2266 0.0340 0.0005 6 6 3.5765 -1.1903 0.0048 7 6 2.1898 -1.2013 -0.0005 8 6 1.4372 -2.5069 -0.0005 9 6 1.0783 -2.8799 -1.4159 10 8 1.4024 -2.1570 -2.3342 11 7 0.3974 -4.0168 -1.6611 12 6 -0.0551 -4.9804 -0.6463 13 6 -0.8091 -6.1071 -1.3865 14 6 -1.2108 -5.4352 -2.7174 15 6 -0.0164 -4.5008 -2.9924 16 6 -2.4919 -4.6337 -2.5445 17 6 -3.6450 -5.5828 -2.1970 18 7 -3.7015 -6.6458 -3.2099 19 6 -4.8626 -6.8973 -3.8910 20 1 -5.5780 -6.1041 -4.0499 21 6 -5.1197 -8.1719 -4.3771 22 7 -4.4486 -9.2027 -3.9088 23 14 -6.4184 -8.4239 -5.6960 24 1 -7.0245 -7.1154 -6.0503 25 1 -5.7899 -9.0207 -6.9018 26 1 -7.4728 -9.3360 -5.1846 27 6 -2.4915 -7.4346 -3.4792 28 6 -1.3451 -6.4748 -3.8197 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5141 32 1 3.9753 2.1529 0.0001 33 1 5.3057 0.0803 0.0013 34 1 4.1367 -2.1137 0.0088 35 1 0.5267 -2.4013 0.5894 36 1 2.0627 -3.2869 0.4333 37 1 -0.7243 -4.4883 0.0597 38 1 0.8028 -5.3944 -0.1165 39 1 -1.6928 -6.4127 -0.8264 40 1 -0.1518 -6.9576 -1.5666 41 1 0.7961 -5.0525 -3.4651 42 1 -0.3251 -3.6654 -3.6209 43 1 -2.3619 -3.9100 -1.7399 44 1 -2.7201 -4.1088 -3.4721 45 1 -4.5848 -5.0305 -2.1937 46 1 -3.4733 -6.0226 -1.2146 47 1 -4.6286 -10.0934 -4.2483 48 1 -2.6708 -8.1032 -4.3212 49 1 -2.2293 -8.0193 -2.5975 50 1 -1.5572 -5.9762 -4.7654 51 1 -0.4145 -7.0360 -3.9053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040847468.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:59 Heat of formation + Delta-G solvation = 17.526019 kcal Electronic energy + Delta-G solvation = -30555.670690 eV Core-core repulsion = 26648.039947 eV Total energy + Delta-G solvation = -3907.630743 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.90399 -40.15088 -38.48089 -35.90372 -34.02922 -33.20073 -33.09066 -31.06658 -30.06953 -29.51461 -29.09053 -27.68657 -26.56982 -24.13332 -23.27520 -22.76000 -22.26433 -22.02180 -20.85514 -19.35441 -18.12507 -17.21713 -17.11078 -16.67175 -16.38927 -16.02747 -15.48498 -14.91683 -14.90169 -14.58229 -14.30452 -14.01047 -13.71396 -13.52178 -13.42275 -13.30287 -13.12435 -12.87450 -12.78009 -12.65248 -12.59828 -12.34880 -12.32604 -12.04065 -11.64736 -11.52679 -11.33103 -11.12215 -10.80618 -10.70846 -10.49706 -10.28296 -10.16584 -10.11035 -9.86989 -9.82363 -9.65394 -9.58139 -9.43951 -8.98538 -8.61996 -8.48228 -6.68917 -5.81935 -3.23575 0.86717 1.07680 2.55826 2.94511 3.35272 3.43886 3.45956 3.58388 4.09564 4.33074 4.44733 4.47885 4.52391 4.65896 4.70027 4.73442 4.90651 5.01942 5.11210 5.12655 5.25882 5.32181 5.34997 5.36963 5.37484 5.41585 5.45210 5.52064 5.63653 5.77580 5.85821 5.89749 5.91652 5.93652 6.01124 6.01789 6.12068 6.13360 6.27403 6.30915 6.49309 6.49947 6.59780 6.65023 6.69801 6.81578 6.94270 7.32803 7.50212 7.62946 7.78061 7.80110 8.10899 8.42745 9.19102 9.82554 10.38550 11.26359 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.002208 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.877898 B =12677.438625 C =13014.615091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.146 3.854 3 N -0.486 5.486 4 C 0.100 3.900 5 C -0.180 4.180 6 C -0.061 4.061 7 C -0.115 4.115 8 C -0.096 4.096 9 C 0.527 3.473 10 O -0.537 6.537 11 N -0.614 5.614 12 C 0.099 3.901 13 C -0.122 4.122 14 C -0.055 4.055 15 C 0.114 3.886 16 C -0.116 4.116 17 C 0.147 3.853 18 N -0.591 5.591 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.173 3.827 28 C -0.127 4.127 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.154 0.846 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.019 0.981 47 H 0.253 0.747 48 H 0.087 0.913 49 H 0.020 0.980 50 H 0.057 0.943 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.672 12.494 11.351 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 N -0.195 5.195 4 C -0.057 4.057 5 C -0.200 4.200 6 C -0.087 4.087 7 C -0.117 4.117 8 C -0.136 4.136 9 C 0.316 3.684 10 O -0.414 6.414 11 N -0.348 5.348 12 C -0.023 4.023 13 C -0.160 4.160 14 C -0.056 4.056 15 C -0.008 4.008 16 C -0.156 4.156 17 C 0.020 3.980 18 N -0.314 5.314 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.047 3.953 28 C -0.166 4.166 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.172 0.828 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.038 0.962 50 H 0.076 0.924 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.371 13.565 10.832 23.186 hybrid contribution 0.043 -1.113 -0.679 1.305 sum 15.414 12.452 10.153 22.265 Atomic orbital electron populations 1.20766 0.88975 1.03930 1.02822 1.21077 0.96901 0.87679 0.93486 1.67524 1.10090 1.29086 1.12791 1.22715 0.89494 0.98428 0.95072 1.22058 1.01360 0.93370 1.03197 1.21430 0.93544 0.98593 0.95170 1.20101 0.94216 0.94927 1.02493 1.20612 1.02055 0.95510 0.95425 1.20041 0.77808 0.79779 0.90815 1.90736 1.53788 1.50502 1.46394 1.48598 1.55241 1.21586 1.09360 1.22167 0.98318 0.90501 0.91359 1.22705 1.00504 0.96330 0.96469 1.21002 0.93723 0.95160 0.95699 1.22391 0.96534 0.97729 0.84168 1.21819 0.95217 0.97691 1.00833 1.20945 0.95334 0.90040 0.91645 1.44052 1.07879 1.37776 1.41667 1.19222 0.97391 0.93127 1.28272 0.91733 1.25021 0.98670 0.95316 1.00662 1.70034 1.43935 0.98099 1.42640 0.86258 0.81139 0.77751 0.81845 1.20276 1.21573 1.21769 1.20784 0.83066 0.91213 1.00209 1.22044 1.00290 0.97405 0.96891 0.90236 0.90196 0.90814 0.82837 0.84840 0.85015 0.87537 0.87931 0.91423 0.91710 0.89030 0.90681 0.91744 0.90687 0.93242 0.92210 0.92885 0.96333 0.93717 0.89440 0.96225 0.92384 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.39 36.00 0.34 -0.76 16 2 C 0.15 1.75 6.78 -82.59 -0.56 1.19 16 3 N -0.49 -6.05 10.27 -9.47 -0.10 -6.15 16 4 C 0.10 1.00 11.18 -17.55 -0.20 0.80 16 5 C -0.18 -1.59 10.11 -39.45 -0.40 -1.99 16 6 C -0.06 -0.59 9.84 -39.28 -0.39 -0.98 16 7 C -0.12 -1.25 4.39 -104.48 -0.46 -1.71 16 8 C -0.10 -0.89 4.35 -29.03 -0.13 -1.01 16 9 C 0.53 6.86 7.07 -10.99 -0.08 6.79 16 10 O -0.54 -9.21 16.30 5.55 0.09 -9.12 16 11 N -0.61 -7.66 3.32 -170.75 -0.57 -8.22 16 12 C 0.10 1.02 6.11 -2.96 -0.02 1.00 16 13 C -0.12 -1.57 4.92 -25.23 -0.12 -1.69 16 14 C -0.05 -0.82 0.55 -154.10 -0.08 -0.91 16 15 C 0.11 1.61 5.81 -2.87 -0.02 1.60 16 16 C -0.12 -1.89 4.85 -27.01 -0.13 -2.02 16 17 C 0.15 2.85 6.21 -3.63 -0.02 2.83 16 18 N -0.59 -13.97 2.98 -172.12 -0.51 -14.49 16 19 C -0.25 -6.66 9.57 -15.06 -0.14 -6.80 16 20 H 0.06 1.71 7.89 -52.49 -0.41 1.29 16 21 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 22 N -0.90 -25.37 11.20 55.49 0.62 -24.75 16 23 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.17 3.83 5.05 -3.63 -0.02 3.81 16 28 C -0.13 -2.22 4.84 -27.01 -0.13 -2.35 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.78 6.15 -51.93 -0.32 0.46 16 32 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 34 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 35 H 0.11 0.80 7.00 -51.93 -0.36 0.44 16 36 H 0.10 0.71 8.06 -51.93 -0.42 0.29 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.28 6.17 -51.93 -0.32 0.95 16 40 H 0.07 0.94 7.98 -51.93 -0.41 0.53 16 41 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 42 H 0.07 1.17 7.94 -51.92 -0.41 0.76 16 43 H 0.05 0.72 7.82 -51.93 -0.41 0.31 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 1.04 7.93 -51.92 -0.41 0.63 16 46 H 0.02 0.36 6.55 -51.93 -0.34 0.02 16 47 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 48 H 0.09 2.23 6.01 -51.93 -0.31 1.92 16 49 H 0.02 0.45 7.62 -51.93 -0.40 0.05 16 50 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -32.50 395.47 -10.48 -42.98 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.30 Total: -0.26 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.64 Total: -2.25 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.56 Total: -53.60 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.50 -10.48 -42.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040847468.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.504 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds