Wall clock time and date at job start Wed Apr 1 2020 01:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31879 * 119.61910 * 2 1 4 4 C 1.31855 * 121.72511 * 179.97438 * 3 2 1 5 5 C 1.38218 * 120.76635 * 0.02562 * 4 3 2 6 6 C 1.38625 * 119.16040 * 359.77049 * 5 4 3 7 7 C 1.38185 * 119.61545 * 180.02562 * 2 1 3 8 8 C 1.50697 * 120.41976 * 359.97438 * 7 2 1 9 9 C 1.50706 * 109.47336 * 84.99699 * 8 7 2 10 10 O 1.21284 * 119.99530 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99892 * 180.02562 * 9 8 7 12 12 C 1.47079 * 125.63160 * 359.97227 * 11 9 8 13 13 C 1.54464 * 107.30050 * 179.04628 * 12 11 9 14 14 C 1.54399 * 102.86726 * 338.50126 * 13 12 11 15 15 C 1.47574 * 125.62492 * 180.02562 * 11 9 8 16 16 C 1.52101 * 110.51527 * 276.65428 * 14 13 12 17 17 C 1.53341 * 109.44571 * 295.89301 * 16 14 13 18 18 N 1.46936 * 108.69252 * 306.70941 * 17 16 14 19 19 C 1.36942 * 120.55198 * 234.32832 * 18 17 16 20 20 H 1.07991 * 120.00045 * 27.98873 * 19 18 17 21 21 C 1.38816 * 119.99281 * 207.98168 * 19 18 17 22 22 N 1.31617 * 120.00238 * 17.47729 * 21 19 18 23 23 Si 1.86799 * 119.99500 * 197.47271 * 21 19 18 24 24 H 1.48492 * 109.47268 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47013 * 120.00790 * 23 21 19 26 26 H 1.48503 * 109.47367 * 240.00238 * 23 21 19 27 27 C 1.46932 * 118.88721 * 54.35259 * 18 17 16 28 28 C 1.52114 * 110.50054 * 152.62299 * 14 13 12 29 29 H 1.09005 * 109.47518 * 269.97961 * 1 2 3 30 30 H 1.08999 * 109.47291 * 29.97917 * 1 2 3 31 31 H 1.09005 * 109.47119 * 149.98230 * 1 2 3 32 32 H 1.08010 * 119.61748 * 179.97438 * 4 3 2 33 33 H 1.08006 * 120.41817 * 180.02562 * 5 4 3 34 34 H 1.08005 * 120.78909 * 180.23565 * 6 5 4 35 35 H 1.09003 * 109.46810 * 324.99602 * 8 7 2 36 36 H 1.08999 * 109.47127 * 205.00001 * 8 7 2 37 37 H 1.09006 * 109.87491 * 59.62493 * 12 11 9 38 38 H 1.09000 * 110.00418 * 298.54567 * 12 11 9 39 39 H 1.08997 * 110.73370 * 220.15629 * 13 12 11 40 40 H 1.08995 * 110.73053 * 96.84704 * 13 12 11 41 41 H 1.08993 * 110.38150 * 84.45472 * 15 11 9 42 42 H 1.09010 * 110.37556 * 322.10043 * 15 11 9 43 43 H 1.08994 * 109.47616 * 55.88334 * 16 14 13 44 44 H 1.09003 * 109.47412 * 175.90276 * 16 14 13 45 45 H 1.09010 * 109.60024 * 186.95099 * 17 16 14 46 46 H 1.08998 * 109.60533 * 66.47603 * 17 16 14 47 47 H 0.97005 * 119.99851 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.59848 * 185.87934 * 27 18 17 49 49 H 1.09002 * 109.73704 * 65.48408 * 27 18 17 50 50 H 1.08994 * 109.46952 * 184.09450 * 28 14 13 51 51 H 1.09001 * 109.47627 * 304.10729 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1949 0.0005 5 6 4.2266 0.0340 0.0005 6 6 3.5765 -1.1903 0.0048 7 6 2.1898 -1.2013 -0.0005 8 6 1.4372 -2.5069 -0.0005 9 6 1.0783 -2.8799 -1.4159 10 8 1.4024 -2.1570 -2.3342 11 7 0.3974 -4.0168 -1.6611 12 6 -0.0551 -4.9804 -0.6463 13 6 -0.8091 -6.1071 -1.3865 14 6 -1.2108 -5.4352 -2.7174 15 6 -0.0164 -4.5008 -2.9924 16 6 -2.4919 -4.6337 -2.5445 17 6 -3.6450 -5.5828 -2.1970 18 7 -3.7015 -6.6458 -3.2099 19 6 -4.8626 -6.8973 -3.8910 20 1 -5.5780 -6.1041 -4.0499 21 6 -5.1197 -8.1719 -4.3771 22 7 -4.4486 -9.2027 -3.9088 23 14 -6.4184 -8.4239 -5.6960 24 1 -7.0245 -7.1154 -6.0503 25 1 -5.7899 -9.0207 -6.9018 26 1 -7.4728 -9.3360 -5.1846 27 6 -2.4915 -7.4346 -3.4792 28 6 -1.3451 -6.4748 -3.8197 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5141 32 1 3.9753 2.1529 0.0001 33 1 5.3057 0.0803 0.0013 34 1 4.1367 -2.1137 0.0088 35 1 0.5267 -2.4013 0.5894 36 1 2.0627 -3.2869 0.4333 37 1 -0.7243 -4.4883 0.0597 38 1 0.8028 -5.3944 -0.1165 39 1 -1.6928 -6.4127 -0.8264 40 1 -0.1518 -6.9576 -1.5666 41 1 0.7961 -5.0525 -3.4651 42 1 -0.3251 -3.6654 -3.6209 43 1 -2.3619 -3.9100 -1.7399 44 1 -2.7201 -4.1088 -3.4721 45 1 -4.5848 -5.0305 -2.1937 46 1 -3.4733 -6.0226 -1.2146 47 1 -4.6286 -10.0934 -4.2483 48 1 -2.6708 -8.1032 -4.3212 49 1 -2.2293 -8.0193 -2.5975 50 1 -1.5572 -5.9762 -4.7654 51 1 -0.4145 -7.0360 -3.9053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040847468.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:58 Heat of formation + Delta-G solvation = -1.122246 kcal Electronic energy + Delta-G solvation = -30556.479339 eV Core-core repulsion = 26648.039947 eV Total energy + Delta-G solvation = -3908.439393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.79839 -41.11898 -39.64626 -37.36267 -34.89572 -34.60125 -33.89488 -32.71943 -31.59016 -30.57183 -30.05150 -28.66914 -27.77902 -25.75925 -24.31476 -23.77662 -23.55687 -22.88125 -22.32808 -20.34481 -19.56282 -18.52994 -17.91242 -17.75406 -17.38219 -16.98376 -16.83907 -16.39740 -15.83879 -15.67198 -15.56391 -15.15922 -15.08068 -14.99469 -14.51197 -14.37074 -14.13872 -14.00012 -13.85676 -13.67881 -13.50302 -13.34738 -13.27960 -13.12114 -13.01290 -12.97708 -12.59358 -12.49621 -12.31158 -12.30432 -12.02045 -11.84943 -11.78267 -11.40235 -11.18892 -11.07850 -10.98308 -10.61496 -10.48737 -10.39052 -9.71380 -9.61714 -8.62208 -7.85767 -5.29016 0.14550 0.36756 1.44852 1.48157 1.57346 1.61957 2.00924 2.51986 2.84229 3.26982 3.41028 3.47385 3.62722 3.65601 3.76088 3.85800 3.89074 3.95992 3.98414 4.11946 4.30294 4.32244 4.42806 4.47710 4.53316 4.55329 4.61186 4.63359 4.67621 4.70060 4.70547 4.77973 4.80759 4.83527 4.93480 4.96800 5.06461 5.10928 5.13417 5.20785 5.24712 5.30186 5.31184 5.36215 5.42029 5.46614 5.58214 5.68677 5.81922 5.84074 6.42374 6.56186 7.06701 7.15295 7.18722 7.91323 8.40704 9.19766 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.002208 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.877898 B =12677.438625 C =13014.615091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.120 3.880 3 N -0.518 5.518 4 C 0.084 3.916 5 C -0.179 4.179 6 C -0.071 4.071 7 C -0.129 4.129 8 C -0.087 4.087 9 C 0.527 3.473 10 O -0.586 6.586 11 N -0.612 5.612 12 C 0.103 3.897 13 C -0.119 4.119 14 C -0.053 4.053 15 C 0.121 3.879 16 C -0.103 4.103 17 C 0.145 3.855 18 N -0.610 5.610 19 C -0.259 4.259 20 H 0.060 0.940 21 C -0.048 4.048 22 N -0.930 5.930 23 Si 0.959 3.041 24 H -0.271 1.271 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.182 3.818 28 C -0.115 4.115 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.176 0.824 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.045 0.955 46 H 0.030 0.970 47 H 0.249 0.751 48 H 0.048 0.952 49 H 0.011 0.989 50 H 0.041 0.959 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.425 12.942 13.231 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.017 4.017 3 N -0.228 5.228 4 C -0.072 4.072 5 C -0.198 4.198 6 C -0.097 4.097 7 C -0.131 4.131 8 C -0.126 4.126 9 C 0.317 3.683 10 O -0.466 6.466 11 N -0.345 5.345 12 C -0.019 4.019 13 C -0.157 4.157 14 C -0.054 4.054 15 C -0.001 4.001 16 C -0.142 4.142 17 C 0.020 3.980 18 N -0.334 5.334 19 C -0.389 4.389 20 H 0.078 0.922 21 C -0.244 4.244 22 N -0.576 5.576 23 Si 0.788 3.212 24 H -0.196 1.196 25 H -0.218 1.218 26 H -0.219 1.219 27 C 0.056 3.944 28 C -0.154 4.154 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.193 0.807 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.048 0.952 47 H 0.058 0.942 48 H 0.066 0.934 49 H 0.029 0.971 50 H 0.060 0.940 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.121 14.024 12.744 25.539 hybrid contribution -0.475 -1.211 -1.261 1.812 sum 16.646 12.813 11.484 23.940 Atomic orbital electron populations 1.20756 0.88545 1.03038 1.03825 1.21378 0.97620 0.88275 0.94449 1.67503 1.11469 1.29850 1.14014 1.23210 0.89079 1.00129 0.94800 1.22425 1.02888 0.92751 1.01730 1.21842 0.93448 0.99908 0.94465 1.20316 0.95004 0.95135 1.02651 1.20658 1.03443 0.95611 0.92910 1.20684 0.76785 0.78939 0.91871 1.90721 1.55725 1.51940 1.48225 1.48637 1.54964 1.21951 1.08979 1.22309 0.99773 0.89171 0.90620 1.22651 1.00618 0.97443 0.94972 1.20857 0.93580 0.94681 0.96233 1.22119 0.96040 0.96732 0.85254 1.21642 0.94526 0.97275 1.00732 1.21073 0.96434 0.89386 0.91116 1.44305 1.07567 1.38704 1.42780 1.19474 0.98146 0.92993 1.28320 0.92226 1.25675 1.00869 0.95222 1.02612 1.70158 1.45475 0.98154 1.43820 0.85332 0.78907 0.77611 0.79356 1.19564 1.21803 1.21869 1.20570 0.84143 0.91538 0.98152 1.21841 0.99161 0.97240 0.97180 0.88254 0.91415 0.91273 0.80670 0.81866 0.82679 0.85471 0.84731 0.89289 0.88368 0.89999 0.90130 0.91364 0.92670 0.90763 0.94036 0.93606 0.95230 0.94157 0.93365 0.97140 0.93969 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 9.39 71.23 0.67 -1.37 16 2 C 0.12 2.74 6.78 42.54 0.29 3.03 16 3 N -0.52 -12.62 10.27 -183.89 -1.89 -14.51 16 4 C 0.08 1.57 11.18 84.68 0.95 2.52 16 5 C -0.18 -2.72 10.11 22.36 0.23 -2.50 16 6 C -0.07 -1.17 9.84 22.47 0.22 -0.95 16 7 C -0.13 -2.51 4.39 -19.77 -0.09 -2.59 16 8 C -0.09 -1.29 4.35 29.10 0.13 -1.16 16 9 C 0.53 12.36 7.07 87.66 0.62 12.98 16 10 O -0.59 -19.52 16.30 -3.04 -0.05 -19.57 16 11 N -0.61 -13.39 3.32 -812.53 -2.70 -16.09 16 12 C 0.10 1.65 6.11 86.77 0.53 2.18 16 13 C -0.12 -2.71 4.92 31.57 0.16 -2.56 16 14 C -0.05 -1.50 0.55 -51.91 -0.03 -1.53 16 15 C 0.12 3.25 5.81 86.56 0.50 3.75 16 16 C -0.10 -3.22 4.85 30.41 0.15 -3.08 16 17 C 0.15 5.57 6.21 86.41 0.54 6.11 16 18 N -0.61 -29.27 2.98 -698.46 -2.08 -31.35 16 19 C -0.26 -14.02 9.57 84.03 0.80 -13.22 16 20 H 0.06 3.21 7.89 -2.92 -0.02 3.19 16 21 C -0.05 -2.65 4.90 84.86 0.42 -2.24 16 22 N -0.93 -53.59 11.20 21.65 0.24 -53.35 16 23 Si 0.96 44.66 29.59 68.60 2.03 46.69 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 27 C 0.18 8.18 5.05 86.41 0.44 8.62 16 28 C -0.11 -3.99 4.84 30.41 0.15 -3.85 16 29 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.37 6.15 -2.38 -0.01 1.36 16 32 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.13 1.38 7.00 -2.39 -0.02 1.36 16 36 H 0.13 1.15 8.06 -2.39 -0.02 1.13 16 37 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 2.07 6.17 -2.39 -0.01 2.05 16 40 H 0.08 1.77 7.98 -2.39 -0.02 1.75 16 41 H 0.07 1.79 7.99 -2.39 -0.02 1.77 16 42 H 0.05 1.70 7.94 -2.38 -0.02 1.69 16 43 H 0.07 1.98 7.82 -2.39 -0.02 1.96 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.79 7.93 -2.38 -0.02 1.77 16 46 H 0.03 1.09 6.55 -2.39 -0.02 1.07 16 47 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 48 H 0.05 2.55 6.01 -2.38 -0.01 2.53 16 49 H 0.01 0.49 7.62 -2.39 -0.02 0.47 16 50 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.07 2.19 8.09 -2.39 -0.02 2.17 16 Total: -1.00 -73.72 395.47 3.13 -70.59 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.91 Total: 13.44 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 6.66 Total: 4.15 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -6.42 Total: -115.31 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.05 Total: -19.57 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -73.72 3.13 -70.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040847468.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.468 kcal (2) G-P(sol) polarization free energy of solvation -73.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds