Wall clock time and date at job start Wed Apr 1 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38351 * 119.46224 * 2 1 4 4 C 1.38353 * 119.30667 * 179.97438 * 3 2 1 5 5 C 1.40022 * 118.28599 * 359.97438 * 4 3 2 6 6 C 1.47836 * 120.55873 * 180.02562 * 5 4 3 7 7 O 1.21548 * 120.00662 * 124.79978 * 6 5 4 8 8 N 1.34781 * 119.99823 * 305.07210 * 6 5 4 9 9 C 1.47487 * 125.66348 * 5.00969 * 8 6 5 10 10 C 1.55241 * 104.79271 * 155.92787 * 9 8 6 11 11 C 1.54518 * 101.43770 * 36.66792 * 10 9 8 12 12 C 1.47176 * 125.66144 * 185.32084 * 8 6 5 13 13 C 1.52271 * 110.20509 * 83.42022 * 11 10 9 14 14 C 1.53310 * 109.41890 * 182.19539 * 13 11 10 15 15 N 1.46920 * 108.71124 * 306.49542 * 14 13 11 16 16 C 1.36936 * 120.56445 * 234.20688 * 15 14 13 17 17 H 1.08005 * 119.99987 * 34.93202 * 16 15 14 18 18 C 1.38817 * 120.00448 * 214.92027 * 16 15 14 19 19 N 1.31616 * 119.99727 * 12.80934 * 18 16 15 20 20 Si 1.86796 * 120.00181 * 192.80038 * 18 16 15 21 21 H 1.48493 * 109.47382 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46913 * 120.00442 * 20 18 16 23 23 H 1.48497 * 109.47499 * 240.00303 * 20 18 16 24 24 C 1.46941 * 118.87307 * 54.23615 * 15 14 13 25 25 C 1.52273 * 110.20647 * 206.61372 * 11 10 9 26 26 C 1.39516 * 118.88181 * 0.27626 * 5 4 3 27 27 C 1.50707 * 119.71653 * 179.70120 * 26 5 4 28 28 N 1.31695 * 120.56906 * 359.45003 * 26 5 4 29 29 H 1.09004 * 109.46711 * 90.00136 * 1 2 3 30 30 H 1.09000 * 109.47532 * 210.00174 * 1 2 3 31 31 H 1.09002 * 109.47404 * 330.00450 * 1 2 3 32 32 H 1.08003 * 120.34432 * 359.97394 * 3 2 1 33 33 H 1.07997 * 120.85789 * 180.02562 * 4 3 2 34 34 H 1.08998 * 110.35373 * 274.88094 * 9 8 6 35 35 H 1.09005 * 110.34963 * 37.16555 * 9 8 6 36 36 H 1.09003 * 111.20164 * 278.57768 * 10 9 8 37 37 H 1.08998 * 110.94247 * 154.64852 * 10 9 8 38 38 H 1.09003 * 109.90626 * 300.83302 * 12 8 6 39 39 H 1.08994 * 109.90891 * 61.91051 * 12 8 6 40 40 H 1.08999 * 109.48103 * 302.18655 * 13 11 10 41 41 H 1.09002 * 109.48003 * 62.21387 * 13 11 10 42 42 H 1.09000 * 109.59912 * 186.72480 * 14 13 11 43 43 H 1.09003 * 109.59888 * 66.26518 * 14 13 11 44 44 H 0.96995 * 120.00475 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.59563 * 185.99196 * 24 15 14 46 46 H 1.08995 * 109.73128 * 65.59648 * 24 15 14 47 47 H 1.09006 * 109.47553 * 297.76877 * 25 11 10 48 48 H 1.08995 * 109.48463 * 57.79432 * 25 11 10 49 49 H 1.09002 * 109.46677 * 94.41952 * 27 26 5 50 50 H 1.09001 * 109.47156 * 214.42251 * 27 26 5 51 51 H 1.08992 * 109.46939 * 334.42216 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2312 -0.0340 0.0016 6 6 5.7082 -0.0966 0.0028 7 8 6.2894 -0.7222 0.8679 8 7 6.4107 0.5445 -0.9523 9 6 5.8444 1.4253 -1.9909 10 6 7.0154 2.3586 -2.4006 11 6 8.2194 1.3937 -2.3185 12 6 7.8694 0.4767 -1.1358 13 6 8.3366 0.5883 -3.6055 14 6 9.5018 -0.4006 -3.4837 15 7 10.7107 0.3406 -3.0993 16 6 11.8557 0.2391 -3.8434 17 1 11.7947 0.1306 -4.9163 18 6 13.0950 0.2761 -3.2190 19 7 13.1767 0.1544 -1.9110 20 14 14.6466 0.4982 -4.2351 21 1 14.2860 0.6108 -5.6712 22 1 15.3485 1.7335 -3.8031 23 1 15.5388 -0.6725 -4.0387 24 6 10.6704 1.1920 -1.9024 25 6 9.4978 2.1708 -2.0347 26 6 3.4716 -1.2042 -0.0038 27 6 4.1627 -2.5435 -0.0096 28 7 2.1558 -1.1487 0.0011 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6443 2.1381 -0.0004 33 1 4.1275 2.1264 0.0010 34 1 5.5086 0.8372 -2.8449 35 1 5.0191 2.0096 -1.5838 36 1 7.1268 3.1834 -1.6967 37 1 6.8805 2.7299 -3.4165 38 1 8.3734 0.8251 -0.2342 39 1 8.1686 -0.5480 -1.3557 40 1 7.4104 0.0397 -3.7766 41 1 8.5188 1.2636 -4.4416 42 1 9.6645 -0.8937 -4.4420 43 1 9.2714 -1.1449 -2.7214 44 1 14.0425 0.1799 -1.4747 45 1 11.6038 1.7487 -1.8182 46 1 10.5323 0.5737 -1.0155 47 1 9.6923 2.8624 -2.8545 48 1 9.3846 2.7303 -1.1062 49 1 4.2587 -2.9071 1.0135 50 1 3.5762 -3.2525 -0.5938 51 1 5.1531 -2.4392 -0.4525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040947266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:08 Heat of formation + Delta-G solvation = 18.232261 kcal Electronic energy + Delta-G solvation = -30846.304053 eV Core-core repulsion = 26938.703935 eV Total energy + Delta-G solvation = -3907.600118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.10412 -39.99596 -38.31852 -35.89924 -33.91402 -33.53655 -32.73940 -31.11419 -30.16026 -29.38918 -29.22757 -27.92219 -26.27659 -24.69314 -23.36149 -22.77270 -22.32706 -22.14288 -20.72320 -19.86826 -18.24606 -17.41094 -17.06298 -16.41745 -16.15228 -15.73380 -15.52988 -15.01290 -14.86004 -14.29185 -14.11746 -13.98979 -13.81380 -13.56639 -13.43632 -13.24157 -13.08591 -12.88629 -12.66067 -12.58437 -12.40366 -12.31500 -12.26145 -12.16581 -11.91053 -11.64221 -11.39036 -11.20694 -10.93271 -10.76240 -10.48401 -10.29307 -10.25547 -10.15812 -10.07527 -9.87486 -9.62944 -9.55989 -9.36444 -9.06815 -8.56912 -8.47885 -6.56052 -5.79250 -3.29534 0.54180 0.90547 2.57789 2.92984 3.35669 3.41967 3.43757 3.45664 3.84573 4.26398 4.32525 4.42692 4.48267 4.60616 4.70956 4.80668 4.96268 5.06886 5.12082 5.20808 5.25543 5.29857 5.31221 5.39256 5.40093 5.46181 5.52290 5.59370 5.63941 5.69601 5.70869 5.86625 5.88547 5.92804 5.93988 6.07354 6.09599 6.13389 6.24991 6.30614 6.35437 6.48673 6.59240 6.62855 6.72491 6.83051 6.97884 7.32204 7.47989 7.62616 7.66604 7.80795 8.09443 8.49534 9.22300 9.83140 10.44049 11.28772 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025908 B = 0.002437 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.506653 B =11484.828875 C =11822.920288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.145 3.855 3 C -0.184 4.184 4 C -0.041 4.041 5 C -0.178 4.178 6 C 0.577 3.423 7 O -0.526 6.526 8 N -0.608 5.608 9 C 0.096 3.904 10 C -0.127 4.127 11 C -0.054 4.054 12 C 0.118 3.882 13 C -0.119 4.119 14 C 0.143 3.857 15 N -0.589 5.589 16 C -0.257 4.257 17 H 0.062 0.938 18 C 0.008 3.992 19 N -0.899 5.899 20 Si 0.901 3.099 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.173 3.827 25 C -0.126 4.126 26 C 0.183 3.817 27 C -0.106 4.106 28 N -0.486 5.486 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.254 0.746 45 H 0.079 0.921 46 H 0.021 0.979 47 H 0.061 0.939 48 H 0.050 0.950 49 H 0.087 0.913 50 H 0.079 0.921 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.224 4.665 1.622 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.007 3.993 3 C -0.203 4.203 4 C -0.067 4.067 5 C -0.183 4.183 6 C 0.363 3.637 7 O -0.403 6.403 8 N -0.342 5.342 9 C -0.027 4.027 10 C -0.165 4.165 11 C -0.055 4.055 12 C -0.003 4.003 13 C -0.158 4.158 14 C 0.017 3.983 15 N -0.312 5.312 16 C -0.387 4.387 17 H 0.080 0.920 18 C -0.191 4.191 19 N -0.542 5.542 20 Si 0.731 3.269 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.216 1.216 24 C 0.047 3.953 25 C -0.166 4.166 26 C 0.044 3.956 27 C -0.163 4.163 28 N -0.197 5.197 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.039 0.961 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.106 0.894 50 H 0.098 0.902 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.247 3.495 2.249 24.601 hybrid contribution 1.329 1.074 -0.435 1.763 sum -22.918 4.568 1.815 23.439 Atomic orbital electron populations 1.20765 0.88495 1.03703 1.03333 1.21468 0.97197 0.88207 0.92401 1.21853 0.94355 0.99484 1.04653 1.21712 0.94510 0.97186 0.93253 1.20757 0.94442 0.95092 1.08000 1.17642 0.85873 0.79144 0.80992 1.90829 1.70878 1.42556 1.36047 1.48575 1.08948 1.46929 1.29741 1.22558 0.97053 0.92218 0.90892 1.22939 0.94047 0.97332 1.02176 1.20968 0.95118 0.94577 0.94837 1.22192 0.78071 1.01360 0.98666 1.21925 0.99095 0.99055 0.95724 1.20975 0.87024 0.92194 0.98115 1.43945 1.08145 1.49388 1.29697 1.19143 0.83591 1.46236 0.89705 0.92045 1.25247 0.98123 1.00070 0.95684 1.70007 1.23653 1.52724 1.07863 0.86252 0.83499 0.77398 0.79768 1.20209 1.21568 1.21643 1.20738 0.95234 0.90752 0.88570 1.22114 0.95463 0.98859 1.00152 1.21330 0.88647 0.94956 0.90655 1.20801 0.99830 0.91697 1.04019 1.67419 1.08840 1.29150 1.14257 0.90070 0.90243 0.90482 0.84225 0.84153 0.91282 0.90992 0.90701 0.89851 0.91060 0.90418 0.93191 0.91870 0.92733 0.96385 0.93623 0.90275 0.96082 0.92061 0.93092 0.89417 0.90222 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.16 36.01 0.37 -0.27 16 2 C 0.15 1.38 6.78 -82.51 -0.56 0.82 16 3 C -0.18 -1.53 9.72 -39.50 -0.38 -1.91 16 4 C -0.04 -0.40 8.29 -38.87 -0.32 -0.72 16 5 C -0.18 -2.27 5.27 -104.83 -0.55 -2.82 16 6 C 0.58 8.81 6.21 -12.33 -0.08 8.74 16 7 O -0.53 -9.94 16.42 5.32 0.09 -9.85 16 8 N -0.61 -8.63 3.33 -171.64 -0.57 -9.21 16 9 C 0.10 1.04 6.26 -2.32 -0.01 1.03 16 10 C -0.13 -1.46 6.00 -24.75 -0.15 -1.60 16 11 C -0.05 -0.82 0.53 -154.09 -0.08 -0.91 16 12 C 0.12 1.94 5.06 -3.31 -0.02 1.92 16 13 C -0.12 -1.91 4.78 -26.94 -0.13 -2.04 16 14 C 0.14 2.92 6.22 -3.65 -0.02 2.90 16 15 N -0.59 -14.32 2.95 -172.16 -0.51 -14.83 16 16 C -0.26 -6.93 9.52 -15.06 -0.14 -7.07 16 17 H 0.06 1.64 7.86 -52.48 -0.41 1.23 16 18 C 0.01 0.23 4.97 -17.43 -0.09 0.14 16 19 N -0.90 -26.00 11.44 55.49 0.64 -25.36 16 20 Si 0.90 21.48 29.57 -169.99 -5.03 16.45 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.17 3.97 4.98 -3.64 -0.02 3.95 16 25 C -0.13 -2.23 4.70 -26.94 -0.13 -2.35 16 26 C 0.18 2.34 6.82 -82.17 -0.56 1.78 16 27 C -0.11 -1.27 9.47 36.01 0.34 -0.93 16 28 N -0.49 -5.85 10.17 -5.42 -0.06 -5.90 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 32 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 33 H 0.14 1.13 6.82 -52.49 -0.36 0.78 16 34 H 0.07 0.73 7.74 -51.93 -0.40 0.33 16 35 H 0.07 0.63 5.16 -51.93 -0.27 0.37 16 36 H 0.07 0.82 8.01 -51.93 -0.42 0.40 16 37 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 38 H 0.07 1.28 7.59 -51.93 -0.39 0.88 16 39 H 0.08 1.44 6.08 -51.93 -0.32 1.12 16 40 H 0.05 0.71 7.47 -51.93 -0.39 0.33 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.11 7.93 -51.93 -0.41 0.69 16 43 H 0.02 0.39 6.53 -51.93 -0.34 0.05 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.08 2.05 6.42 -51.93 -0.33 1.72 16 46 H 0.02 0.52 7.47 -51.93 -0.39 0.13 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 49 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.08 1.03 6.63 -51.93 -0.34 0.69 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -32.26 392.07 -10.19 -42.45 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -8.12 Total: -0.31 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.54 Total: 0.65 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.50 Total: -55.30 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.26 -10.19 -42.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040947266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.684 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds