Wall clock time and date at job start Wed Apr 1 2020 01:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38351 * 119.46224 * 2 1 4 4 C 1.38353 * 119.30667 * 179.97438 * 3 2 1 5 5 C 1.40022 * 118.28599 * 359.97438 * 4 3 2 6 6 C 1.47836 * 120.55873 * 180.02562 * 5 4 3 7 7 O 1.21548 * 120.00662 * 124.79978 * 6 5 4 8 8 N 1.34781 * 119.99823 * 305.07210 * 6 5 4 9 9 C 1.47487 * 125.66348 * 5.00969 * 8 6 5 10 10 C 1.55241 * 104.79271 * 155.92787 * 9 8 6 11 11 C 1.54518 * 101.43770 * 36.66792 * 10 9 8 12 12 C 1.47176 * 125.66144 * 185.32084 * 8 6 5 13 13 C 1.52271 * 110.20509 * 83.42022 * 11 10 9 14 14 C 1.53310 * 109.41890 * 182.19539 * 13 11 10 15 15 N 1.46920 * 108.71124 * 306.49542 * 14 13 11 16 16 C 1.36936 * 120.56445 * 234.20688 * 15 14 13 17 17 H 1.08005 * 119.99987 * 34.93202 * 16 15 14 18 18 C 1.38817 * 120.00448 * 214.92027 * 16 15 14 19 19 N 1.31616 * 119.99727 * 12.80934 * 18 16 15 20 20 Si 1.86796 * 120.00181 * 192.80038 * 18 16 15 21 21 H 1.48493 * 109.47382 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46913 * 120.00442 * 20 18 16 23 23 H 1.48497 * 109.47499 * 240.00303 * 20 18 16 24 24 C 1.46941 * 118.87307 * 54.23615 * 15 14 13 25 25 C 1.52273 * 110.20647 * 206.61372 * 11 10 9 26 26 C 1.39516 * 118.88181 * 0.27626 * 5 4 3 27 27 C 1.50707 * 119.71653 * 179.70120 * 26 5 4 28 28 N 1.31695 * 120.56906 * 359.45003 * 26 5 4 29 29 H 1.09004 * 109.46711 * 90.00136 * 1 2 3 30 30 H 1.09000 * 109.47532 * 210.00174 * 1 2 3 31 31 H 1.09002 * 109.47404 * 330.00450 * 1 2 3 32 32 H 1.08003 * 120.34432 * 359.97394 * 3 2 1 33 33 H 1.07997 * 120.85789 * 180.02562 * 4 3 2 34 34 H 1.08998 * 110.35373 * 274.88094 * 9 8 6 35 35 H 1.09005 * 110.34963 * 37.16555 * 9 8 6 36 36 H 1.09003 * 111.20164 * 278.57768 * 10 9 8 37 37 H 1.08998 * 110.94247 * 154.64852 * 10 9 8 38 38 H 1.09003 * 109.90626 * 300.83302 * 12 8 6 39 39 H 1.08994 * 109.90891 * 61.91051 * 12 8 6 40 40 H 1.08999 * 109.48103 * 302.18655 * 13 11 10 41 41 H 1.09002 * 109.48003 * 62.21387 * 13 11 10 42 42 H 1.09000 * 109.59912 * 186.72480 * 14 13 11 43 43 H 1.09003 * 109.59888 * 66.26518 * 14 13 11 44 44 H 0.96995 * 120.00475 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.59563 * 185.99196 * 24 15 14 46 46 H 1.08995 * 109.73128 * 65.59648 * 24 15 14 47 47 H 1.09006 * 109.47553 * 297.76877 * 25 11 10 48 48 H 1.08995 * 109.48463 * 57.79432 * 25 11 10 49 49 H 1.09002 * 109.46677 * 94.41952 * 27 26 5 50 50 H 1.09001 * 109.47156 * 214.42251 * 27 26 5 51 51 H 1.08992 * 109.46939 * 334.42216 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2312 -0.0340 0.0016 6 6 5.7082 -0.0966 0.0028 7 8 6.2894 -0.7222 0.8679 8 7 6.4107 0.5445 -0.9523 9 6 5.8444 1.4253 -1.9909 10 6 7.0154 2.3586 -2.4006 11 6 8.2194 1.3937 -2.3185 12 6 7.8694 0.4767 -1.1358 13 6 8.3366 0.5883 -3.6055 14 6 9.5018 -0.4006 -3.4837 15 7 10.7107 0.3406 -3.0993 16 6 11.8557 0.2391 -3.8434 17 1 11.7947 0.1306 -4.9163 18 6 13.0950 0.2761 -3.2190 19 7 13.1767 0.1544 -1.9110 20 14 14.6466 0.4982 -4.2351 21 1 14.2860 0.6108 -5.6712 22 1 15.3485 1.7335 -3.8031 23 1 15.5388 -0.6725 -4.0387 24 6 10.6704 1.1920 -1.9024 25 6 9.4978 2.1708 -2.0347 26 6 3.4716 -1.2042 -0.0038 27 6 4.1627 -2.5435 -0.0096 28 7 2.1558 -1.1487 0.0011 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6443 2.1381 -0.0004 33 1 4.1275 2.1264 0.0010 34 1 5.5086 0.8372 -2.8449 35 1 5.0191 2.0096 -1.5838 36 1 7.1268 3.1834 -1.6967 37 1 6.8805 2.7299 -3.4165 38 1 8.3734 0.8251 -0.2342 39 1 8.1686 -0.5480 -1.3557 40 1 7.4104 0.0397 -3.7766 41 1 8.5188 1.2636 -4.4416 42 1 9.6645 -0.8937 -4.4420 43 1 9.2714 -1.1449 -2.7214 44 1 14.0425 0.1799 -1.4747 45 1 11.6038 1.7487 -1.8182 46 1 10.5323 0.5737 -1.0155 47 1 9.6923 2.8624 -2.8545 48 1 9.3846 2.7303 -1.1062 49 1 4.2587 -2.9071 1.0135 50 1 3.5762 -3.2525 -0.5938 51 1 5.1531 -2.4392 -0.4525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040947266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:07 Heat of formation + Delta-G solvation = -1.192543 kcal Electronic energy + Delta-G solvation = -30847.146376 eV Core-core repulsion = 26938.703935 eV Total energy + Delta-G solvation = -3908.442441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.08594 -41.07477 -39.58379 -37.43945 -34.95599 -34.65454 -33.88344 -32.74701 -31.71385 -30.56135 -30.10389 -28.97619 -27.63629 -26.20706 -24.61381 -23.91153 -23.49964 -23.16772 -22.25308 -20.87729 -19.77555 -18.66728 -18.16791 -17.87674 -17.13716 -16.89680 -16.78433 -16.37787 -15.85901 -15.70667 -15.48621 -15.22095 -14.94348 -14.76056 -14.62297 -14.50852 -14.21625 -14.15384 -13.78610 -13.71624 -13.40740 -13.27007 -13.13904 -13.02734 -12.97671 -12.93314 -12.87528 -12.74459 -12.63049 -12.43522 -12.07731 -11.94737 -11.88363 -11.46854 -11.32596 -11.07619 -11.02501 -10.84646 -10.56337 -10.51197 -9.90158 -9.70295 -8.57289 -7.87371 -5.41625 -0.27286 0.15472 1.44884 1.45611 1.46347 1.57264 1.84702 2.49786 2.61433 3.09308 3.25441 3.31849 3.56273 3.59380 3.69050 3.70312 3.75217 3.80906 4.03618 4.21782 4.23324 4.33433 4.38359 4.47826 4.50473 4.51309 4.56599 4.59798 4.63691 4.70905 4.73572 4.75569 4.83379 4.85518 4.92979 4.97039 5.00660 5.03685 5.08211 5.11995 5.14571 5.19772 5.25499 5.31295 5.38082 5.40186 5.50612 5.63567 5.65970 5.75919 6.38382 6.42490 6.87846 6.94167 7.16321 7.85141 8.40699 9.18015 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025908 B = 0.002437 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.506653 B =11484.828875 C =11822.920288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.138 3.862 3 C -0.169 4.169 4 C -0.038 4.038 5 C -0.197 4.197 6 C 0.575 3.425 7 O -0.578 6.578 8 N -0.606 5.606 9 C 0.094 3.906 10 C -0.112 4.112 11 C -0.052 4.052 12 C 0.125 3.875 13 C -0.104 4.104 14 C 0.138 3.862 15 N -0.606 5.606 16 C -0.263 4.263 17 H 0.065 0.935 18 C -0.048 4.048 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.263 1.263 22 H -0.289 1.289 23 H -0.294 1.294 24 C 0.181 3.819 25 C -0.112 4.112 26 C 0.163 3.837 27 C -0.102 4.102 28 N -0.507 5.507 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.182 0.818 33 H 0.163 0.837 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.000 1.000 44 H 0.249 0.751 45 H 0.043 0.957 46 H -0.012 1.012 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.938 7.610 -0.188 28.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.000 4.000 3 C -0.188 4.188 4 C -0.064 4.064 5 C -0.202 4.202 6 C 0.364 3.636 7 O -0.458 6.458 8 N -0.338 5.338 9 C -0.027 4.027 10 C -0.150 4.150 11 C -0.052 4.052 12 C 0.003 3.997 13 C -0.142 4.142 14 C 0.013 3.987 15 N -0.330 5.330 16 C -0.394 4.394 17 H 0.082 0.918 18 C -0.244 4.244 19 N -0.581 5.581 20 Si 0.796 3.204 21 H -0.187 1.187 22 H -0.216 1.216 23 H -0.222 1.222 24 C 0.055 3.945 25 C -0.151 4.151 26 C 0.025 3.975 27 C -0.160 4.160 28 N -0.218 5.218 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.200 0.800 33 H 0.181 0.819 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.018 0.982 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.006 0.994 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.099 0.901 50 H 0.110 0.890 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -28.008 6.460 0.394 28.746 hybrid contribution 2.394 0.091 0.164 2.401 sum -25.614 6.552 0.559 26.444 Atomic orbital electron populations 1.20889 0.85935 1.04762 1.04498 1.22191 0.98935 0.88024 0.90874 1.22286 0.93653 1.00660 1.02168 1.21995 0.95443 0.96597 0.92361 1.20571 0.92399 0.96611 1.10610 1.18139 0.87110 0.78093 0.80229 1.90792 1.72165 1.44701 1.38180 1.48622 1.07844 1.47151 1.30193 1.22827 0.97608 0.91894 0.90372 1.22919 0.91210 0.96544 1.04331 1.20874 0.95772 0.95049 0.93543 1.21897 0.79825 0.99743 0.98270 1.21752 0.97820 0.98234 0.96426 1.21114 0.87429 0.93017 0.97166 1.44216 1.08755 1.50418 1.29623 1.19488 0.84705 1.44994 0.90168 0.91774 1.26034 1.01180 1.00550 0.96647 1.70181 1.23881 1.54521 1.09561 0.85204 0.79533 0.76767 0.78922 1.18701 1.21556 1.22156 1.20516 0.96016 0.90857 0.87128 1.21894 0.94230 0.97673 1.01279 1.21316 0.89327 0.94912 0.91901 1.20708 0.99020 0.92605 1.03623 1.67447 1.08247 1.30887 1.15195 0.88661 0.90924 0.87740 0.80033 0.81920 0.90168 0.87850 0.89347 0.87118 0.93508 0.93690 0.90675 0.90792 0.92948 0.98183 0.94183 0.93891 0.99404 0.91278 0.91543 0.90116 0.88992 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.16 71.24 0.72 -0.12 16 2 C 0.14 2.16 6.78 42.57 0.29 2.45 16 3 C -0.17 -2.01 9.72 22.32 0.22 -1.80 16 4 C -0.04 -0.62 8.29 22.73 0.19 -0.43 16 5 C -0.20 -4.81 5.27 -20.00 -0.11 -4.92 16 6 C 0.58 17.87 6.21 86.78 0.54 18.41 16 7 O -0.58 -23.30 16.42 -3.87 -0.06 -23.36 16 8 N -0.61 -16.77 3.33 -815.22 -2.72 -19.48 16 9 C 0.09 1.70 6.26 86.96 0.54 2.24 16 10 C -0.11 -2.09 6.00 31.88 0.19 -1.90 16 11 C -0.05 -1.49 0.53 -51.91 -0.03 -1.52 16 12 C 0.13 4.23 5.06 86.49 0.44 4.67 16 13 C -0.10 -3.16 4.78 30.46 0.15 -3.01 16 14 C 0.14 5.76 6.22 86.40 0.54 6.30 16 15 N -0.61 -30.51 2.95 -698.59 -2.06 -32.56 16 16 C -0.26 -14.52 9.52 84.03 0.80 -13.72 16 17 H 0.06 3.44 7.86 -2.91 -0.02 3.42 16 18 C -0.05 -2.73 4.97 84.86 0.42 -2.31 16 19 N -0.94 -56.82 11.44 21.65 0.25 -56.58 16 20 Si 0.97 45.19 29.57 68.60 2.03 47.22 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 C 0.18 8.71 4.98 86.40 0.43 9.14 16 25 C -0.11 -3.88 4.70 30.46 0.14 -3.74 16 26 C 0.16 4.15 6.82 42.89 0.29 4.44 16 27 C -0.10 -2.60 9.47 71.24 0.67 -1.93 16 28 N -0.51 -11.48 10.17 -171.05 -1.74 -13.22 16 29 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.30 8.07 -2.39 -0.02 0.28 16 32 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 33 H 0.16 1.83 6.82 -2.91 -0.02 1.81 16 34 H 0.08 1.34 7.74 -2.39 -0.02 1.32 16 35 H 0.10 1.27 5.16 -2.38 -0.01 1.26 16 36 H 0.09 1.49 8.01 -2.39 -0.02 1.47 16 37 H 0.11 1.58 8.01 -2.39 -0.02 1.56 16 38 H 0.05 1.79 7.59 -2.39 -0.02 1.77 16 39 H 0.04 1.80 6.08 -2.39 -0.01 1.78 16 40 H 0.07 1.95 7.47 -2.39 -0.02 1.93 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 43 H 0.00 0.01 6.53 -2.39 -0.02 0.00 16 44 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 45 H 0.04 2.35 6.42 -2.39 -0.02 2.33 16 46 H -0.01 -0.65 7.47 -2.39 -0.02 -0.67 16 47 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 48 H 0.07 2.10 8.10 -2.39 -0.02 2.08 16 49 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.06 1.67 6.63 -2.39 -0.02 1.65 16 Total: -1.00 -77.12 392.07 3.07 -74.06 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.93 Total: 11.68 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 6.44 Total: 12.25 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -6.27 Total: -121.85 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.36 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -77.12 3.07 -74.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040947266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.866 kcal (2) G-P(sol) polarization free energy of solvation -77.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds