Wall clock time and date at job start Wed Apr 1 2020 02:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38230 * 120.42032 * 2 1 4 4 N 1.31855 * 120.76179 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72350 * 359.70755 * 4 3 2 6 6 C 1.38181 * 120.76625 * 0.58084 * 5 4 3 7 7 C 1.50700 * 120.41680 * 179.70631 * 6 5 4 8 8 C 1.53004 * 109.47208 * 269.72387 * 7 6 5 9 9 C 1.50700 * 109.47208 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.27843 * 9 8 7 12 12 C 1.47146 * 121.22000 * 359.44214 * 11 9 8 13 13 C 1.52341 * 108.24597 * 237.25966 * 12 11 9 14 14 C 1.53091 * 110.65198 * 302.88002 * 13 12 11 15 15 H 1.09001 * 113.06299 * 288.86902 * 14 13 12 16 16 C 1.56024 * 106.39277 * 164.43658 * 14 13 12 17 17 C 1.54505 * 102.61001 * 281.63671 * 16 14 13 18 18 N 1.47434 * 107.14375 * 337.13919 * 17 16 14 19 19 C 1.36945 * 126.05692 * 178.36274 * 18 17 16 20 20 H 1.07994 * 119.99838 * 180.02562 * 19 18 17 21 21 C 1.38808 * 119.99941 * 0.03156 * 19 18 17 22 22 N 1.31620 * 120.00115 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99974 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46675 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47069 * 119.99386 * 23 21 19 26 26 H 1.48490 * 109.47159 * 239.99767 * 23 21 19 27 27 C 1.46466 * 107.88380 * 358.38637 * 18 17 16 28 28 H 1.08999 * 107.85729 * 270.36422 * 27 18 17 29 29 C 1.46758 * 121.21169 * 179.72937 * 11 9 8 30 30 C 1.38626 * 120.41695 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46544 * 270.02237 * 1 2 3 32 32 H 1.09004 * 109.46852 * 30.01903 * 1 2 3 33 33 H 1.08995 * 109.47826 * 150.01889 * 1 2 3 34 34 H 1.07997 * 119.61709 * 359.95565 * 3 2 1 35 35 H 1.08003 * 119.61578 * 180.30883 * 5 4 3 36 36 H 1.09000 * 109.47500 * 149.72391 * 7 6 5 37 37 H 1.08998 * 109.47585 * 29.72385 * 7 6 5 38 38 H 1.09009 * 109.46730 * 59.99906 * 8 7 6 39 39 H 1.08998 * 109.46846 * 300.00451 * 8 7 6 40 40 H 1.09000 * 109.76047 * 356.90932 * 12 11 9 41 41 H 1.08994 * 109.76058 * 117.66582 * 12 11 9 42 42 H 1.08998 * 109.32346 * 182.50904 * 13 12 11 43 43 H 1.09001 * 109.08593 * 63.10064 * 13 12 11 44 44 H 1.09001 * 110.78133 * 39.90981 * 16 14 13 45 45 H 1.09002 * 110.78709 * 163.35458 * 16 14 13 46 46 H 1.08998 * 109.90982 * 96.52383 * 17 16 14 47 47 H 1.09004 * 109.90002 * 217.58554 * 17 16 14 48 48 H 0.97004 * 119.99981 * 180.02562 * 22 21 19 49 49 H 1.09006 * 109.22273 * 247.78437 * 29 11 9 50 50 H 1.08995 * 109.23380 * 7.14482 * 29 11 9 51 51 H 1.08003 * 120.78946 * 0.03644 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0822 0.0068 6 6 3.5947 -1.1472 0.0010 7 6 4.4026 -2.4193 0.0016 8 6 4.6765 -2.8502 -1.4408 9 6 5.4838 -4.1227 -1.4402 10 8 5.8085 -4.6343 -0.3897 11 7 5.8502 -4.6887 -2.6072 12 6 5.4663 -4.0939 -3.8972 13 6 4.6922 -5.1377 -4.6922 14 6 5.5293 -6.4061 -4.8766 15 1 6.3606 -6.2721 -5.5688 16 6 4.5398 -7.5252 -5.3269 17 6 3.8607 -7.9292 -3.9993 18 7 4.7737 -7.5414 -2.9085 19 6 4.5385 -7.6937 -1.5680 20 1 5.2790 -7.3734 -0.8501 21 6 3.3485 -8.2598 -1.1321 22 7 2.4458 -8.6498 -2.0070 23 14 3.0279 -8.4681 0.6965 24 1 4.1901 -7.9535 1.4644 25 1 1.8096 -7.7083 1.0751 26 1 2.8292 -9.9073 1.0033 27 6 5.9765 -6.9640 -3.5127 28 1 6.6847 -7.7741 -3.6872 29 6 6.6413 -5.9244 -2.6378 30 6 2.2089 -1.1955 0.0005 31 1 -0.3632 0.0004 1.0277 32 1 -0.3633 0.8899 -0.5142 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6675 2.1276 -0.0007 35 1 5.3046 0.1284 0.0120 36 1 3.8459 -3.2031 0.5153 37 1 5.3484 -2.2489 0.5157 38 1 5.2333 -2.0664 -1.9545 39 1 3.7306 -3.0205 -1.9549 40 1 4.8361 -3.2209 -3.7274 41 1 6.3598 -3.8024 -4.4490 42 1 4.4372 -4.7299 -5.6704 43 1 3.7760 -5.3864 -4.1566 44 1 3.8072 -7.1327 -6.0322 45 1 5.0796 -8.3686 -5.7575 46 1 2.9115 -7.4040 -3.8930 47 1 3.6928 -9.0061 -3.9810 48 1 1.6140 -9.0451 -1.7024 49 1 7.6339 -5.7054 -3.0316 50 1 6.7361 -6.3152 -1.6247 51 1 1.6887 -2.1420 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042144144.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:15 Heat of formation + Delta-G solvation = 17.651930 kcal Electronic energy + Delta-G solvation = -31118.960827 eV Core-core repulsion = 27211.335543 eV Total energy + Delta-G solvation = -3907.625283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.48066 -39.91052 -38.13998 -35.00764 -34.58911 -33.72082 -32.82308 -31.32297 -30.41552 -28.93312 -28.38944 -27.46753 -25.39109 -24.57490 -23.54527 -22.93020 -22.51419 -20.95810 -19.98348 -19.45861 -18.17965 -17.12488 -16.79088 -16.77189 -16.53615 -15.47131 -15.10536 -14.90572 -14.55457 -14.41503 -14.19437 -13.94767 -13.70170 -13.55604 -13.22113 -13.13993 -13.04543 -12.79880 -12.78447 -12.57977 -12.41038 -12.07821 -11.96807 -11.65091 -11.51456 -11.35595 -11.22163 -10.97277 -10.90340 -10.77744 -10.71847 -10.07566 -9.86536 -9.83449 -9.71570 -9.64000 -9.54426 -9.49649 -9.24663 -8.88052 -8.53587 -8.09690 -6.76082 -5.64242 -2.95934 0.96296 1.16524 3.13238 3.44712 3.45112 3.52094 3.58798 3.67917 4.29778 4.56511 4.58493 4.61623 4.85694 4.87537 4.90134 5.02865 5.08159 5.13175 5.15212 5.30974 5.34345 5.35895 5.48589 5.50244 5.52150 5.55744 5.65309 5.70371 5.73811 5.77932 5.82232 5.90122 5.98525 6.05298 6.10816 6.13724 6.19153 6.26479 6.30303 6.30780 6.44035 6.48726 6.60680 6.62870 6.75123 6.93891 7.10881 7.62072 7.64831 7.84564 7.90999 7.93497 8.30319 8.70907 9.29745 9.90484 10.54957 11.48163 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010386 B = 0.003585 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.368884 B = 7809.278312 C = 8907.020701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.135 4.135 3 C 0.086 3.914 4 N -0.482 5.482 5 C 0.092 3.908 6 C -0.120 4.120 7 C -0.063 4.063 8 C -0.130 4.130 9 C 0.521 3.479 10 O -0.537 6.537 11 N -0.595 5.595 12 C 0.112 3.888 13 C -0.123 4.123 14 C -0.101 4.101 15 H 0.075 0.925 16 C -0.144 4.144 17 C 0.179 3.821 18 N -0.589 5.589 19 C -0.210 4.210 20 H 0.082 0.918 21 C -0.009 4.009 22 N -0.926 5.926 23 Si 0.903 3.097 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.153 3.847 28 H 0.026 0.974 29 C 0.114 3.886 30 C -0.074 4.074 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.044 0.956 47 H 0.040 0.960 48 H 0.248 0.752 49 H 0.053 0.947 50 H 0.095 0.905 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 16.535 -4.141 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.137 4.137 3 C -0.071 4.071 4 N -0.190 5.190 5 C -0.065 4.065 6 C -0.122 4.122 7 C -0.101 4.101 8 C -0.170 4.170 9 C 0.309 3.691 10 O -0.413 6.413 11 N -0.328 5.328 12 C -0.012 4.012 13 C -0.161 4.161 14 C -0.121 4.121 15 H 0.093 0.907 16 C -0.183 4.183 17 C 0.054 3.946 18 N -0.314 5.314 19 C -0.339 4.339 20 H 0.100 0.900 21 C -0.204 4.204 22 N -0.575 5.575 23 Si 0.734 3.266 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.044 3.956 28 H 0.043 0.957 29 C -0.010 4.010 30 C -0.100 4.100 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.071 0.929 50 H 0.113 0.887 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.712 16.975 -3.408 17.399 hybrid contribution -0.882 -1.091 0.745 1.588 sum 0.830 15.885 -2.662 16.128 Atomic orbital electron populations 1.20736 0.90250 1.03214 1.02637 1.20947 0.97596 0.94125 1.01029 1.22608 0.90011 0.97335 0.97121 1.67661 1.08342 1.31279 1.11670 1.22663 1.00244 0.87131 0.96460 1.20990 0.94560 0.96812 0.99871 1.20302 1.00244 0.93387 0.96190 1.21610 1.01174 0.95957 0.98256 1.20290 0.79756 0.85668 0.83389 1.90689 1.55610 1.64268 1.30764 1.47806 1.54073 1.25684 1.05237 1.21535 0.98872 0.96097 0.84675 1.21738 1.00175 0.94980 0.99242 1.22356 0.97332 0.94989 0.97386 0.90673 1.23172 0.98175 0.97242 0.99676 1.21200 0.92202 0.98684 0.82498 1.44311 1.15008 1.70009 1.02119 1.19108 1.00982 1.32953 0.80811 0.89978 1.24687 0.96831 1.01562 0.97310 1.69972 1.08615 1.47715 1.31192 0.86141 0.77866 0.77108 0.85506 1.20183 1.22082 1.22034 1.20724 0.90995 0.92914 0.90936 0.95663 1.21366 0.92021 0.84313 1.03251 1.21530 0.93609 0.98481 0.96362 0.90904 0.91228 0.91092 0.83132 0.82878 0.89579 0.89819 0.89416 0.89019 0.90555 0.91907 0.92068 0.90155 0.92337 0.92762 0.93796 0.94161 0.94155 0.92903 0.88716 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.04 36.01 0.36 -0.48 16 2 C -0.14 -1.38 5.90 -104.48 -0.62 -2.00 16 3 C 0.09 0.91 10.86 -17.54 -0.19 0.72 16 4 N -0.48 -5.93 10.36 -13.25 -0.14 -6.07 16 5 C 0.09 1.06 10.86 -17.55 -0.19 0.87 16 6 C -0.12 -1.43 5.15 -104.48 -0.54 -1.96 16 7 C -0.06 -0.82 4.66 -27.88 -0.13 -0.95 16 8 C -0.13 -1.72 4.05 -27.88 -0.11 -1.83 16 9 C 0.52 9.22 7.72 -10.98 -0.08 9.14 16 10 O -0.54 -11.65 15.44 5.55 0.09 -11.57 16 11 N -0.60 -9.95 2.98 -174.40 -0.52 -10.47 16 12 C 0.11 1.46 6.32 -4.03 -0.03 1.43 16 13 C -0.12 -1.82 5.02 -27.02 -0.14 -1.95 16 14 C -0.10 -1.61 3.68 -88.43 -0.33 -1.94 16 15 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.14 -2.55 6.33 -24.32 -0.15 -2.71 16 17 C 0.18 4.19 4.61 -2.74 -0.01 4.18 16 18 N -0.59 -14.34 3.20 -164.42 -0.53 -14.86 16 19 C -0.21 -5.81 9.70 -15.06 -0.15 -5.95 16 20 H 0.08 2.34 6.51 -52.49 -0.34 2.00 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 22 N -0.93 -27.21 10.38 55.49 0.58 -26.64 16 23 Si 0.90 23.15 29.55 -169.99 -5.02 18.13 16 24 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 27 C 0.15 2.98 2.97 -68.30 -0.20 2.78 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 C 0.11 2.08 5.68 -4.78 -0.03 2.05 16 30 C -0.07 -0.85 9.55 -39.28 -0.37 -1.22 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 36 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 37 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 38 H 0.09 0.94 7.92 -51.92 -0.41 0.53 16 39 H 0.09 1.21 7.78 -51.93 -0.40 0.80 16 40 H 0.08 0.85 6.02 -51.93 -0.31 0.54 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.49 6.85 -51.93 -0.36 1.14 16 44 H 0.06 0.94 7.97 -51.93 -0.41 0.52 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.04 1.15 7.04 -51.93 -0.37 0.78 16 47 H 0.04 1.07 7.57 -51.93 -0.39 0.67 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.09 2.05 5.54 -51.93 -0.29 1.76 16 51 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 396.77 15.07 5.98 5.98 Total: -1.00 -33.40 396.77 -10.89 -44.29 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.33 Total: 1.38 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -3.00 Total: -0.17 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.61 Total: -58.03 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.40 -10.89 -44.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042144144.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.942 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds