Wall clock time and date at job start Wed Apr 1 2020 02:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38230 * 120.42032 * 2 1 4 4 N 1.31855 * 120.76179 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72350 * 359.70755 * 4 3 2 6 6 C 1.38181 * 120.76625 * 0.58084 * 5 4 3 7 7 C 1.50700 * 120.41680 * 179.70631 * 6 5 4 8 8 C 1.53004 * 109.47208 * 269.72387 * 7 6 5 9 9 C 1.50700 * 109.47208 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.27843 * 9 8 7 12 12 C 1.47146 * 121.22000 * 359.44214 * 11 9 8 13 13 C 1.52341 * 108.24597 * 237.25966 * 12 11 9 14 14 C 1.53091 * 110.65198 * 302.88002 * 13 12 11 15 15 H 1.09001 * 113.06299 * 288.86902 * 14 13 12 16 16 C 1.56024 * 106.39277 * 164.43658 * 14 13 12 17 17 C 1.54505 * 102.61001 * 281.63671 * 16 14 13 18 18 N 1.47434 * 107.14375 * 337.13919 * 17 16 14 19 19 C 1.36945 * 126.05692 * 178.36274 * 18 17 16 20 20 H 1.07994 * 119.99838 * 180.02562 * 19 18 17 21 21 C 1.38808 * 119.99941 * 0.03156 * 19 18 17 22 22 N 1.31620 * 120.00115 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99974 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46675 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47069 * 119.99386 * 23 21 19 26 26 H 1.48490 * 109.47159 * 239.99767 * 23 21 19 27 27 C 1.46466 * 107.88380 * 358.38637 * 18 17 16 28 28 H 1.08999 * 107.85729 * 270.36422 * 27 18 17 29 29 C 1.46758 * 121.21169 * 179.72937 * 11 9 8 30 30 C 1.38626 * 120.41695 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46544 * 270.02237 * 1 2 3 32 32 H 1.09004 * 109.46852 * 30.01903 * 1 2 3 33 33 H 1.08995 * 109.47826 * 150.01889 * 1 2 3 34 34 H 1.07997 * 119.61709 * 359.95565 * 3 2 1 35 35 H 1.08003 * 119.61578 * 180.30883 * 5 4 3 36 36 H 1.09000 * 109.47500 * 149.72391 * 7 6 5 37 37 H 1.08998 * 109.47585 * 29.72385 * 7 6 5 38 38 H 1.09009 * 109.46730 * 59.99906 * 8 7 6 39 39 H 1.08998 * 109.46846 * 300.00451 * 8 7 6 40 40 H 1.09000 * 109.76047 * 356.90932 * 12 11 9 41 41 H 1.08994 * 109.76058 * 117.66582 * 12 11 9 42 42 H 1.08998 * 109.32346 * 182.50904 * 13 12 11 43 43 H 1.09001 * 109.08593 * 63.10064 * 13 12 11 44 44 H 1.09001 * 110.78133 * 39.90981 * 16 14 13 45 45 H 1.09002 * 110.78709 * 163.35458 * 16 14 13 46 46 H 1.08998 * 109.90982 * 96.52383 * 17 16 14 47 47 H 1.09004 * 109.90002 * 217.58554 * 17 16 14 48 48 H 0.97004 * 119.99981 * 180.02562 * 22 21 19 49 49 H 1.09006 * 109.22273 * 247.78437 * 29 11 9 50 50 H 1.08995 * 109.23380 * 7.14482 * 29 11 9 51 51 H 1.08003 * 120.78946 * 0.03644 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0822 0.0068 6 6 3.5947 -1.1472 0.0010 7 6 4.4026 -2.4193 0.0016 8 6 4.6765 -2.8502 -1.4408 9 6 5.4838 -4.1227 -1.4402 10 8 5.8085 -4.6343 -0.3897 11 7 5.8502 -4.6887 -2.6072 12 6 5.4663 -4.0939 -3.8972 13 6 4.6922 -5.1377 -4.6922 14 6 5.5293 -6.4061 -4.8766 15 1 6.3606 -6.2721 -5.5688 16 6 4.5398 -7.5252 -5.3269 17 6 3.8607 -7.9292 -3.9993 18 7 4.7737 -7.5414 -2.9085 19 6 4.5385 -7.6937 -1.5680 20 1 5.2790 -7.3734 -0.8501 21 6 3.3485 -8.2598 -1.1321 22 7 2.4458 -8.6498 -2.0070 23 14 3.0279 -8.4681 0.6965 24 1 4.1901 -7.9535 1.4644 25 1 1.8096 -7.7083 1.0751 26 1 2.8292 -9.9073 1.0033 27 6 5.9765 -6.9640 -3.5127 28 1 6.6847 -7.7741 -3.6872 29 6 6.6413 -5.9244 -2.6378 30 6 2.2089 -1.1955 0.0005 31 1 -0.3632 0.0004 1.0277 32 1 -0.3633 0.8899 -0.5142 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6675 2.1276 -0.0007 35 1 5.3046 0.1284 0.0120 36 1 3.8459 -3.2031 0.5153 37 1 5.3484 -2.2489 0.5157 38 1 5.2333 -2.0664 -1.9545 39 1 3.7306 -3.0205 -1.9549 40 1 4.8361 -3.2209 -3.7274 41 1 6.3598 -3.8024 -4.4490 42 1 4.4372 -4.7299 -5.6704 43 1 3.7760 -5.3864 -4.1566 44 1 3.8072 -7.1327 -6.0322 45 1 5.0796 -8.3686 -5.7575 46 1 2.9115 -7.4040 -3.8930 47 1 3.6928 -9.0061 -3.9810 48 1 1.6140 -9.0451 -1.7024 49 1 7.6339 -5.7054 -3.0316 50 1 6.7361 -6.3152 -1.6247 51 1 1.6887 -2.1420 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042144144.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:14 Heat of formation + Delta-G solvation = -2.237697 kcal Electronic energy + Delta-G solvation = -31119.823306 eV Core-core repulsion = 27211.335543 eV Total energy + Delta-G solvation = -3908.487762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.50763 -41.13308 -39.62506 -36.52024 -35.63137 -34.64556 -34.49954 -32.89151 -31.67060 -30.32225 -30.05382 -28.18321 -26.62217 -26.43092 -24.83040 -23.90770 -23.80773 -21.89992 -21.74128 -20.82986 -19.59538 -18.45054 -18.15755 -17.82330 -17.66331 -17.00437 -16.60287 -16.38508 -16.06598 -15.68938 -15.37644 -15.22945 -14.99732 -14.80068 -14.32859 -14.19352 -13.99998 -13.99316 -13.94557 -13.68166 -13.60913 -13.28943 -13.20932 -13.14970 -12.97864 -12.91829 -12.67463 -12.50152 -12.43714 -12.30714 -12.03628 -11.99901 -11.65977 -11.38883 -11.26235 -11.12766 -10.71232 -10.67900 -10.50691 -10.39908 -9.72932 -9.44377 -8.79961 -7.84267 -5.13851 0.12719 0.29095 1.33956 1.36023 1.47905 1.78277 2.21954 2.46896 2.80958 3.34505 3.41736 3.54978 3.67460 3.80441 3.87499 3.92499 3.96534 4.02477 4.03452 4.10779 4.15719 4.19003 4.33346 4.39150 4.49401 4.51894 4.60709 4.63892 4.67075 4.70552 4.76451 4.79044 4.85494 4.89931 4.93116 4.93361 5.03904 5.10691 5.16046 5.17935 5.20124 5.31210 5.33909 5.38301 5.54516 5.66683 5.72613 5.75289 5.78560 5.82402 6.23389 6.63433 7.00276 7.15443 7.36901 7.83587 8.46716 9.26607 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010386 B = 0.003585 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.368884 B = 7809.278312 C = 8907.020701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.133 4.133 3 C 0.083 3.917 4 N -0.500 5.500 5 C 0.087 3.913 6 C -0.124 4.124 7 C -0.054 4.054 8 C -0.117 4.117 9 C 0.507 3.493 10 O -0.590 6.590 11 N -0.598 5.598 12 C 0.108 3.892 13 C -0.120 4.120 14 C -0.084 4.084 15 H 0.122 0.878 16 C -0.131 4.131 17 C 0.187 3.813 18 N -0.605 5.605 19 C -0.200 4.200 20 H 0.066 0.934 21 C -0.062 4.062 22 N -0.949 5.949 23 Si 0.951 3.049 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.290 1.290 27 C 0.141 3.859 28 H 0.023 0.977 29 C 0.118 3.882 30 C -0.090 4.090 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.178 0.822 35 H 0.169 0.831 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.033 0.967 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.008 0.992 47 H -0.004 1.004 48 H 0.242 0.758 49 H 0.091 0.909 50 H 0.049 0.951 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 19.590 -6.624 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.135 4.135 3 C -0.074 4.074 4 N -0.208 5.208 5 C -0.069 4.069 6 C -0.126 4.126 7 C -0.093 4.093 8 C -0.156 4.156 9 C 0.297 3.703 10 O -0.471 6.471 11 N -0.330 5.330 12 C -0.013 4.013 13 C -0.158 4.158 14 C -0.103 4.103 15 H 0.140 0.860 16 C -0.169 4.169 17 C 0.062 3.938 18 N -0.330 5.330 19 C -0.330 4.330 20 H 0.084 0.916 21 C -0.255 4.255 22 N -0.600 5.600 23 Si 0.782 3.218 24 H -0.208 1.208 25 H -0.221 1.221 26 H -0.217 1.217 27 C 0.034 3.966 28 H 0.041 0.959 29 C -0.006 4.006 30 C -0.116 4.116 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.195 0.805 35 H 0.187 0.813 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.142 0.858 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.052 0.948 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.026 0.974 47 H 0.014 0.986 48 H 0.051 0.949 49 H 0.109 0.891 50 H 0.068 0.932 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.551 20.051 -5.940 21.068 hybrid contribution -1.099 -2.051 1.515 2.776 sum 1.452 18.001 -4.425 18.594 Atomic orbital electron populations 1.20795 0.88363 1.04129 1.03408 1.21206 0.98972 0.93436 0.99893 1.23091 0.89717 0.98507 0.96049 1.67716 1.09263 1.31461 1.12367 1.22871 1.01068 0.86726 0.96229 1.20817 0.94549 0.96235 1.01015 1.20136 0.99951 0.93218 0.96002 1.21579 1.00790 0.94588 0.98670 1.21127 0.79451 0.86747 0.82963 1.90662 1.57696 1.65981 1.32742 1.48005 1.53393 1.24946 1.06627 1.21874 1.00797 0.95958 0.82687 1.21716 0.98102 0.95007 1.01002 1.22414 0.98116 0.94546 0.95209 0.86006 1.23040 0.98833 0.98590 0.96421 1.20953 0.91701 0.95528 0.85650 1.44493 1.16879 1.70368 1.01304 1.19124 1.00112 1.31103 0.82613 0.91581 1.25256 0.97285 1.02768 1.00141 1.70151 1.08703 1.49110 1.32051 0.85374 0.77211 0.76893 0.82276 1.20780 1.22089 1.21716 1.21042 0.89118 0.93320 0.93159 0.95939 1.21200 0.93996 0.84853 1.00578 1.21666 0.93801 0.99081 0.97026 0.90109 0.89213 0.91299 0.80477 0.81342 0.92680 0.89928 0.85784 0.88802 0.88312 0.87945 0.88033 0.94813 0.89985 0.91570 0.97404 0.98566 0.94876 0.89092 0.93195 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.04 71.24 0.72 -0.73 16 2 C -0.13 -2.52 5.90 -19.77 -0.12 -2.63 16 3 C 0.08 1.58 10.86 84.69 0.92 2.50 16 4 N -0.50 -11.37 10.36 -195.84 -2.03 -13.40 16 5 C 0.09 1.90 10.86 84.67 0.92 2.82 16 6 C -0.12 -2.87 5.15 -19.77 -0.10 -2.98 16 7 C -0.05 -1.45 4.66 29.85 0.14 -1.31 16 8 C -0.12 -2.97 4.05 29.85 0.12 -2.85 16 9 C 0.51 17.98 7.72 87.66 0.68 18.66 16 10 O -0.59 -26.84 15.44 -3.04 -0.05 -26.89 16 11 N -0.60 -19.05 2.98 -824.06 -2.45 -21.51 16 12 C 0.11 2.36 6.32 86.04 0.54 2.90 16 13 C -0.12 -3.09 5.02 30.41 0.15 -2.94 16 14 C -0.08 -2.36 3.68 -9.38 -0.03 -2.39 16 15 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 16 C -0.13 -4.34 6.33 32.15 0.20 -4.14 16 17 C 0.19 9.02 4.61 86.71 0.40 9.42 16 18 N -0.61 -30.35 3.20 -674.09 -2.15 -32.51 16 19 C -0.20 -11.57 9.70 84.03 0.81 -10.76 16 20 H 0.07 4.00 6.51 -2.91 -0.02 3.98 16 21 C -0.06 -3.71 5.49 84.86 0.47 -3.25 16 22 N -0.95 -58.64 10.38 21.65 0.22 -58.41 16 23 Si 0.95 49.97 29.55 68.60 2.03 52.00 16 24 H -0.28 -14.91 7.11 99.48 0.71 -14.20 16 25 H -0.29 -15.27 7.11 99.48 0.71 -14.57 16 26 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 27 C 0.14 5.34 2.97 44.77 0.13 5.48 16 28 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 29 C 0.12 4.19 5.68 85.76 0.49 4.67 16 30 C -0.09 -2.03 9.55 22.47 0.21 -1.82 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 0.83 8.09 -2.39 -0.02 0.81 16 33 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 34 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 35 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 36 H 0.05 1.78 8.05 -2.39 -0.02 1.76 16 37 H 0.08 2.17 8.05 -2.39 -0.02 2.15 16 38 H 0.12 2.25 7.92 -2.38 -0.02 2.23 16 39 H 0.09 2.37 7.78 -2.39 -0.02 2.35 16 40 H 0.10 1.75 6.02 -2.39 -0.01 1.73 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.03 1.20 6.85 -2.39 -0.02 1.18 16 44 H 0.08 2.37 7.97 -2.39 -0.02 2.35 16 45 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.01 0.42 7.04 -2.39 -0.02 0.41 16 47 H 0.00 -0.22 7.57 -2.38 -0.02 -0.24 16 48 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 49 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 50 H 0.05 2.24 5.54 -2.39 -0.01 2.22 16 51 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -80.06 396.77 3.13 -76.93 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.91 Total: 13.13 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 6.65 Total: 10.66 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -6.41 Total: -125.83 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.89 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.03 Total: 52.00 kcal Total: -80.06 3.13 -76.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042144144.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.688 kcal (2) G-P(sol) polarization free energy of solvation -80.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds