Wall clock time and date at job start Wed Apr 1 2020 02:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38215 * 120.41903 * 2 1 4 4 N 1.31854 * 120.76332 * 180.02562 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.41925 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47098 * 269.97348 * 7 6 5 9 9 C 1.50694 * 109.47102 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00352 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99989 * 180.02562 * 9 8 7 12 12 C 1.46589 * 119.75465 * 359.72718 * 11 9 8 13 13 C 1.54306 * 110.48329 * 132.17524 * 12 11 9 14 14 C 1.51983 * 107.21254 * 52.07739 * 13 12 11 15 15 H 1.08997 * 111.57193 * 56.71738 * 14 13 12 16 16 C 1.53306 * 114.31800 * 184.55707 * 14 13 12 17 17 C 1.55293 * 101.30640 * 154.29825 * 16 14 13 18 18 N 1.48167 * 107.04297 * 336.97492 * 17 16 14 19 19 C 1.36936 * 126.39563 * 174.97381 * 18 17 16 20 20 H 1.08001 * 119.99479 * 180.02562 * 19 18 17 21 21 C 1.38808 * 120.00207 * 0.02608 * 19 18 17 22 22 N 1.31614 * 119.99982 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99877 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47102 * 90.00154 * 23 21 19 25 25 H 1.48503 * 109.46979 * 209.99993 * 23 21 19 26 26 H 1.48499 * 109.47191 * 329.99679 * 23 21 19 27 27 C 1.45497 * 107.20302 * 354.99166 * 18 17 16 28 28 H 1.09002 * 109.57180 * 274.16065 * 27 18 17 29 29 C 1.47802 * 119.75323 * 180.02562 * 11 9 8 30 30 C 1.38628 * 120.41518 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46832 * 89.99626 * 1 2 3 32 32 H 1.09003 * 109.47259 * 209.99666 * 1 2 3 33 33 H 1.08995 * 109.47077 * 329.99593 * 1 2 3 34 34 H 1.07994 * 119.62230 * 0.02562 * 3 2 1 35 35 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 36 36 H 1.09008 * 109.46574 * 29.97555 * 7 6 5 37 37 H 1.08994 * 109.46982 * 149.97341 * 7 6 5 38 38 H 1.08993 * 109.47281 * 299.99960 * 8 7 6 39 39 H 1.09001 * 109.46924 * 59.99900 * 8 7 6 40 40 H 1.09005 * 109.22862 * 252.57443 * 12 11 9 41 41 H 1.08994 * 109.23251 * 11.93930 * 12 11 9 42 42 H 1.08999 * 110.04856 * 292.58969 * 13 12 11 43 43 H 1.09000 * 109.87344 * 171.46447 * 13 12 11 44 44 H 1.09000 * 111.70243 * 36.12119 * 16 14 13 45 45 H 1.08992 * 110.72171 * 272.05246 * 16 14 13 46 46 H 1.08997 * 109.92598 * 217.62134 * 17 16 14 47 47 H 1.09003 * 110.08726 * 96.40550 * 17 16 14 48 48 H 0.97011 * 120.00117 * 180.02562 * 22 21 19 49 49 H 1.08991 * 110.06843 * 350.47014 * 29 11 9 50 50 H 1.09002 * 110.06742 * 111.93519 * 29 11 9 51 51 H 1.08003 * 120.79539 * 359.94889 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2257 0.0822 -0.0015 6 6 3.5948 -1.1472 -0.0026 7 6 4.4027 -2.4194 -0.0032 8 6 4.6760 -2.8492 -1.4459 9 6 5.4844 -4.1210 -1.4465 10 8 5.8094 -4.6335 -0.3964 11 7 5.8462 -4.6891 -2.6140 12 6 5.4453 -4.0684 -3.8800 13 6 6.6511 -3.9674 -4.8375 14 6 7.2714 -5.3520 -4.9272 15 1 6.5453 -6.0960 -5.2549 16 6 8.5584 -5.4147 -5.7578 17 6 9.2639 -6.6492 -5.1334 18 7 8.7161 -6.8175 -3.7671 19 6 8.9925 -7.8418 -2.9014 20 1 8.5324 -7.8621 -1.9245 21 6 9.8640 -8.8540 -3.2793 22 7 10.4243 -8.8294 -4.4700 23 14 10.2415 -10.2509 -2.0980 24 1 9.2669 -11.3519 -2.3057 25 1 11.6164 -10.7531 -2.3485 26 1 10.1414 -9.7583 -0.7007 27 6 7.8294 -5.6913 -3.5172 28 1 8.4080 -4.8474 -3.1414 29 6 6.6385 -5.9367 -2.6082 30 6 2.2089 -1.1955 -0.0005 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6676 2.1275 0.0004 35 1 5.3047 0.1285 -0.0023 36 1 5.3488 -2.2492 0.5108 37 1 3.8461 -3.2034 0.5102 38 1 3.7300 -3.0194 -1.9598 39 1 5.2326 -2.0652 -1.9593 40 1 4.6640 -4.6708 -4.3436 41 1 5.0576 -3.0689 -3.6830 42 1 7.3809 -3.2588 -4.4460 43 1 6.3153 -3.6469 -5.8238 44 1 9.1625 -4.5160 -5.6334 45 1 8.3305 -5.5865 -6.8097 46 1 10.3391 -6.4770 -5.0839 47 1 9.0575 -7.5390 -5.7283 48 1 11.0330 -9.5370 -4.7343 49 1 6.9793 -6.1587 -1.5970 50 1 6.0383 -6.7627 -2.9899 51 1 1.6888 -2.1420 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042144147.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:19 Heat of formation + Delta-G solvation = 17.425789 kcal Electronic energy + Delta-G solvation = -29876.570493 eV Core-core repulsion = 25968.935404 eV Total energy + Delta-G solvation = -3907.635090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.69594 -40.13238 -38.34543 -35.41144 -34.85393 -33.91793 -32.90790 -31.35750 -30.76175 -29.19210 -28.44035 -27.65885 -25.48381 -24.67187 -23.59312 -23.05296 -22.24577 -21.13394 -20.10155 -19.68906 -18.79546 -17.33482 -17.08521 -16.98767 -16.49729 -15.67513 -15.53484 -14.85550 -14.67879 -14.57111 -14.38682 -14.12686 -13.78332 -13.68449 -13.38952 -13.34996 -13.20668 -13.11102 -12.93918 -12.82469 -12.50680 -12.36670 -12.15641 -11.95076 -11.74483 -11.50994 -11.30957 -11.24084 -10.94565 -10.81540 -10.75045 -10.16754 -9.98755 -9.95784 -9.83865 -9.73299 -9.68958 -9.59064 -9.46012 -9.08252 -8.62911 -8.42568 -6.85616 -5.71699 -3.05465 0.77352 0.96356 2.75375 3.10405 3.41580 3.47219 3.47812 3.49585 4.10643 4.34236 4.40863 4.51004 4.61653 4.65224 4.68051 4.79367 4.85462 4.89380 4.97940 5.03074 5.15051 5.16710 5.25259 5.29216 5.40196 5.41391 5.50150 5.55553 5.61862 5.66150 5.67644 5.76561 5.88109 5.90269 5.92460 6.01518 6.04287 6.07370 6.12594 6.16354 6.37544 6.41624 6.47879 6.55881 6.70839 6.75067 7.05281 7.54632 7.56624 7.61669 7.68213 7.81310 8.23081 8.32355 9.19182 9.82234 10.48789 11.40554 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.002206 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.216348 B =12687.110912 C =13506.354984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C 0.089 3.911 4 N -0.480 5.480 5 C 0.095 3.905 6 C -0.124 4.124 7 C -0.062 4.062 8 C -0.133 4.133 9 C 0.509 3.491 10 O -0.542 6.542 11 N -0.607 5.607 12 C 0.108 3.892 13 C -0.120 4.120 14 C -0.112 4.112 15 H 0.078 0.922 16 C -0.139 4.139 17 C 0.176 3.824 18 N -0.593 5.593 19 C -0.228 4.228 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.156 3.844 28 H 0.024 0.976 29 C 0.117 3.883 30 C -0.075 4.075 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.037 0.963 47 H 0.056 0.944 48 H 0.252 0.748 49 H 0.091 0.909 50 H 0.069 0.931 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.968 18.296 2.309 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 C -0.068 4.068 4 N -0.187 5.187 5 C -0.062 4.062 6 C -0.126 4.126 7 C -0.101 4.101 8 C -0.173 4.173 9 C 0.297 3.703 10 O -0.420 6.420 11 N -0.340 5.340 12 C -0.016 4.016 13 C -0.159 4.159 14 C -0.132 4.132 15 H 0.096 0.904 16 C -0.177 4.177 17 C 0.052 3.948 18 N -0.318 5.318 19 C -0.356 4.356 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.569 5.569 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.047 3.953 28 H 0.042 0.958 29 C -0.006 4.006 30 C -0.101 4.101 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.110 0.890 50 H 0.087 0.913 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.179 18.607 2.873 26.171 hybrid contribution -0.157 -1.600 0.374 1.650 sum -18.336 17.007 3.247 25.219 Atomic orbital electron populations 1.20730 0.90216 1.03160 1.02668 1.20947 0.97587 0.94167 1.01166 1.22653 0.90020 0.97428 0.96696 1.67691 1.08329 1.31288 1.11414 1.22725 1.00426 0.87099 0.95935 1.20970 0.94519 0.96806 1.00337 1.20296 1.00462 0.93351 0.95962 1.21676 1.00935 0.96167 0.98507 1.20577 0.80265 0.85859 0.83617 1.90707 1.55860 1.64454 1.30958 1.48315 1.53831 1.26379 1.05515 1.21820 0.97203 0.97815 0.84714 1.21895 0.97124 0.98262 0.98621 1.22223 0.97129 0.95514 0.98324 0.90369 1.22654 0.96276 1.00370 0.98409 1.21554 0.95515 0.93074 0.84658 1.44193 1.49775 1.23705 1.14111 1.19043 1.22271 0.98829 0.95444 0.90293 1.24784 0.99508 0.98947 0.97077 1.69944 1.33923 1.34181 1.18857 0.86144 0.77364 0.82267 0.80201 1.21594 1.21695 1.20585 1.21013 0.90082 0.91735 0.92454 0.95819 1.21718 0.92295 0.83924 1.02625 1.21447 0.93471 0.98293 0.96892 0.90827 0.91271 0.91175 0.83037 0.82715 0.89566 0.89839 0.89044 0.88775 0.91698 0.90364 0.91371 0.90933 0.92444 0.92277 0.94499 0.92577 0.93773 0.89029 0.91261 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.04 36.01 0.36 -0.15 16 2 C -0.14 -1.01 5.90 -104.48 -0.62 -1.63 16 3 C 0.09 0.75 10.86 -17.55 -0.19 0.56 16 4 N -0.48 -5.03 10.36 -13.26 -0.14 -5.17 16 5 C 0.09 0.91 10.86 -17.55 -0.19 0.72 16 6 C -0.12 -1.10 5.15 -104.48 -0.54 -1.64 16 7 C -0.06 -0.60 4.66 -27.88 -0.13 -0.73 16 8 C -0.13 -1.28 4.01 -27.89 -0.11 -1.39 16 9 C 0.51 7.37 7.67 -10.99 -0.08 7.28 16 10 O -0.54 -10.05 15.35 5.56 0.09 -9.97 16 11 N -0.61 -8.91 3.00 -172.46 -0.52 -9.43 16 12 C 0.11 1.19 6.25 -3.31 -0.02 1.17 16 13 C -0.12 -1.47 5.70 -26.56 -0.15 -1.63 16 14 C -0.11 -1.86 2.59 -89.71 -0.23 -2.09 16 15 H 0.08 1.34 8.13 -51.93 -0.42 0.92 16 16 C -0.14 -2.48 6.51 -25.36 -0.17 -2.65 16 17 C 0.18 4.20 5.44 -1.91 -0.01 4.19 16 18 N -0.59 -14.87 3.34 -162.88 -0.54 -15.41 16 19 C -0.23 -6.30 9.88 -15.06 -0.15 -6.45 16 20 H 0.08 2.15 7.44 -52.49 -0.39 1.76 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -26.97 10.43 55.49 0.58 -26.39 16 23 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.16 3.17 2.78 -67.80 -0.19 2.98 16 28 H 0.02 0.53 7.94 -51.93 -0.41 0.12 16 29 C 0.12 2.18 5.68 -3.93 -0.02 2.16 16 30 C -0.08 -0.60 9.55 -39.28 -0.37 -0.97 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 33 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 34 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.09 0.90 8.05 -51.92 -0.42 0.48 16 37 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 38 H 0.09 0.72 7.98 -51.93 -0.41 0.31 16 39 H 0.09 0.79 7.56 -51.93 -0.39 0.39 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.65 5.84 -51.93 -0.30 0.34 16 42 H 0.07 0.86 7.99 -51.93 -0.41 0.45 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 47 H 0.06 1.48 7.19 -51.93 -0.37 1.10 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.09 1.95 6.79 -51.93 -0.35 1.60 16 50 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 51 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 400.64 15.07 6.04 6.04 Total: -1.00 -33.31 400.64 -10.93 -44.23 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.50 Total: -0.68 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.91 Total: -0.56 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.62 Total: -56.39 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.31 -10.93 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042144147.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.660 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds