Wall clock time and date at job start Wed Apr 1 2020 02:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38215 * 120.41903 * 2 1 4 4 N 1.31854 * 120.76332 * 180.02562 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.41925 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47098 * 269.97348 * 7 6 5 9 9 C 1.50694 * 109.47102 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00352 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99989 * 180.02562 * 9 8 7 12 12 C 1.46589 * 119.75465 * 359.72718 * 11 9 8 13 13 C 1.54306 * 110.48329 * 132.17524 * 12 11 9 14 14 C 1.51983 * 107.21254 * 52.07739 * 13 12 11 15 15 H 1.08997 * 111.57193 * 56.71738 * 14 13 12 16 16 C 1.53306 * 114.31800 * 184.55707 * 14 13 12 17 17 C 1.55293 * 101.30640 * 154.29825 * 16 14 13 18 18 N 1.48167 * 107.04297 * 336.97492 * 17 16 14 19 19 C 1.36936 * 126.39563 * 174.97381 * 18 17 16 20 20 H 1.08001 * 119.99479 * 180.02562 * 19 18 17 21 21 C 1.38808 * 120.00207 * 0.02608 * 19 18 17 22 22 N 1.31614 * 119.99982 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99877 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47102 * 90.00154 * 23 21 19 25 25 H 1.48503 * 109.46979 * 209.99993 * 23 21 19 26 26 H 1.48499 * 109.47191 * 329.99679 * 23 21 19 27 27 C 1.45497 * 107.20302 * 354.99166 * 18 17 16 28 28 H 1.09002 * 109.57180 * 274.16065 * 27 18 17 29 29 C 1.47802 * 119.75323 * 180.02562 * 11 9 8 30 30 C 1.38628 * 120.41518 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46832 * 89.99626 * 1 2 3 32 32 H 1.09003 * 109.47259 * 209.99666 * 1 2 3 33 33 H 1.08995 * 109.47077 * 329.99593 * 1 2 3 34 34 H 1.07994 * 119.62230 * 0.02562 * 3 2 1 35 35 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 36 36 H 1.09008 * 109.46574 * 29.97555 * 7 6 5 37 37 H 1.08994 * 109.46982 * 149.97341 * 7 6 5 38 38 H 1.08993 * 109.47281 * 299.99960 * 8 7 6 39 39 H 1.09001 * 109.46924 * 59.99900 * 8 7 6 40 40 H 1.09005 * 109.22862 * 252.57443 * 12 11 9 41 41 H 1.08994 * 109.23251 * 11.93930 * 12 11 9 42 42 H 1.08999 * 110.04856 * 292.58969 * 13 12 11 43 43 H 1.09000 * 109.87344 * 171.46447 * 13 12 11 44 44 H 1.09000 * 111.70243 * 36.12119 * 16 14 13 45 45 H 1.08992 * 110.72171 * 272.05246 * 16 14 13 46 46 H 1.08997 * 109.92598 * 217.62134 * 17 16 14 47 47 H 1.09003 * 110.08726 * 96.40550 * 17 16 14 48 48 H 0.97011 * 120.00117 * 180.02562 * 22 21 19 49 49 H 1.08991 * 110.06843 * 350.47014 * 29 11 9 50 50 H 1.09002 * 110.06742 * 111.93519 * 29 11 9 51 51 H 1.08003 * 120.79539 * 359.94889 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2257 0.0822 -0.0015 6 6 3.5948 -1.1472 -0.0026 7 6 4.4027 -2.4194 -0.0032 8 6 4.6760 -2.8492 -1.4459 9 6 5.4844 -4.1210 -1.4465 10 8 5.8094 -4.6335 -0.3964 11 7 5.8462 -4.6891 -2.6140 12 6 5.4453 -4.0684 -3.8800 13 6 6.6511 -3.9674 -4.8375 14 6 7.2714 -5.3520 -4.9272 15 1 6.5453 -6.0960 -5.2549 16 6 8.5584 -5.4147 -5.7578 17 6 9.2639 -6.6492 -5.1334 18 7 8.7161 -6.8175 -3.7671 19 6 8.9925 -7.8418 -2.9014 20 1 8.5324 -7.8621 -1.9245 21 6 9.8640 -8.8540 -3.2793 22 7 10.4243 -8.8294 -4.4700 23 14 10.2415 -10.2509 -2.0980 24 1 9.2669 -11.3519 -2.3057 25 1 11.6164 -10.7531 -2.3485 26 1 10.1414 -9.7583 -0.7007 27 6 7.8294 -5.6913 -3.5172 28 1 8.4080 -4.8474 -3.1414 29 6 6.6385 -5.9367 -2.6082 30 6 2.2089 -1.1955 -0.0005 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6676 2.1275 0.0004 35 1 5.3047 0.1285 -0.0023 36 1 5.3488 -2.2492 0.5108 37 1 3.8461 -3.2034 0.5102 38 1 3.7300 -3.0194 -1.9598 39 1 5.2326 -2.0652 -1.9593 40 1 4.6640 -4.6708 -4.3436 41 1 5.0576 -3.0689 -3.6830 42 1 7.3809 -3.2588 -4.4460 43 1 6.3153 -3.6469 -5.8238 44 1 9.1625 -4.5160 -5.6334 45 1 8.3305 -5.5865 -6.8097 46 1 10.3391 -6.4770 -5.0839 47 1 9.0575 -7.5390 -5.7283 48 1 11.0330 -9.5370 -4.7343 49 1 6.9793 -6.1587 -1.5970 50 1 6.0383 -6.7627 -2.9899 51 1 1.6888 -2.1420 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042144147.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:18 Heat of formation + Delta-G solvation = -2.254213 kcal Electronic energy + Delta-G solvation = -29877.423882 eV Core-core repulsion = 25968.935404 eV Total energy + Delta-G solvation = -3908.488478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.58271 -41.12770 -39.75530 -36.84591 -35.62904 -34.67373 -34.45591 -32.89096 -31.84334 -30.52259 -29.99344 -28.12643 -26.54858 -26.44230 -24.72505 -23.83297 -23.51605 -21.86451 -21.78287 -21.15298 -19.92270 -18.69838 -18.08165 -17.77727 -17.64674 -16.93104 -16.78970 -16.54057 -15.90629 -15.67927 -15.45514 -15.19951 -15.09295 -14.71492 -14.43070 -14.34286 -14.08270 -13.92460 -13.81992 -13.71647 -13.59879 -13.52427 -13.20570 -13.15839 -13.06641 -12.95455 -12.74794 -12.51919 -12.39547 -12.13408 -12.02846 -11.93352 -11.76879 -11.56834 -11.32437 -11.01119 -10.84679 -10.74697 -10.48500 -10.34365 -9.69688 -9.65920 -8.92081 -7.88069 -5.22852 0.16349 0.35657 1.41921 1.43153 1.52173 1.63941 1.96329 2.47667 2.84348 3.30017 3.38921 3.50693 3.64615 3.81678 3.85316 3.93558 3.96670 3.99576 4.06753 4.09022 4.16696 4.21379 4.28933 4.31157 4.33604 4.49438 4.56116 4.61349 4.62766 4.70837 4.77071 4.85553 4.86211 4.89563 4.93170 4.94107 4.98988 5.12717 5.15822 5.16401 5.25489 5.26482 5.35671 5.38587 5.40476 5.51183 5.62266 5.65571 5.77349 5.83687 6.17865 6.46309 7.05951 7.06470 7.18958 7.75189 8.42098 9.22747 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.002206 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.216348 B =12687.110912 C =13506.354984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.134 4.134 3 C 0.078 3.922 4 N -0.507 5.507 5 C 0.080 3.920 6 C -0.124 4.124 7 C -0.056 4.056 8 C -0.119 4.119 9 C 0.503 3.497 10 O -0.593 6.593 11 N -0.607 5.607 12 C 0.102 3.898 13 C -0.112 4.112 14 C -0.096 4.096 15 H 0.076 0.924 16 C -0.123 4.123 17 C 0.179 3.821 18 N -0.615 5.615 19 C -0.236 4.236 20 H 0.074 0.926 21 C -0.064 4.064 22 N -0.948 5.948 23 Si 0.972 3.028 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.276 1.276 27 C 0.147 3.853 28 H 0.008 0.992 29 C 0.129 3.871 30 C -0.080 4.080 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.171 0.829 35 H 0.159 0.841 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.070 0.930 45 H 0.085 0.915 46 H -0.003 1.003 47 H 0.023 0.977 48 H 0.247 0.753 49 H 0.054 0.946 50 H 0.062 0.938 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.189 20.607 1.343 30.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.135 4.135 3 C -0.079 4.079 4 N -0.215 5.215 5 C -0.076 4.076 6 C -0.126 4.126 7 C -0.094 4.094 8 C -0.158 4.158 9 C 0.293 3.707 10 O -0.474 6.474 11 N -0.340 5.340 12 C -0.019 4.019 13 C -0.151 4.151 14 C -0.115 4.115 15 H 0.094 0.906 16 C -0.161 4.161 17 C 0.054 3.946 18 N -0.340 5.340 19 C -0.365 4.365 20 H 0.092 0.908 21 C -0.257 4.257 22 N -0.597 5.597 23 Si 0.800 3.200 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.201 1.201 27 C 0.039 3.961 28 H 0.026 0.974 29 C 0.005 3.995 30 C -0.106 4.106 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.189 0.811 35 H 0.177 0.823 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.102 0.898 41 H 0.137 0.863 42 H 0.085 0.915 43 H 0.130 0.870 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.016 0.984 47 H 0.041 0.959 48 H 0.056 0.944 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -21.439 20.966 1.889 30.046 hybrid contribution 0.826 -2.276 0.728 2.528 sum -20.613 18.690 2.617 27.947 Atomic orbital electron populations 1.20792 0.88140 1.04074 1.03594 1.21234 0.99048 0.93504 0.99752 1.23073 0.89636 0.98839 0.96328 1.67687 1.09508 1.31841 1.12481 1.22849 1.00846 0.87330 0.96618 1.20821 0.94905 0.95891 1.01024 1.20163 0.99783 0.93551 0.95912 1.21685 1.01505 0.93545 0.99056 1.21509 0.79766 0.86796 0.82591 1.90690 1.57797 1.66063 1.32831 1.48399 1.53059 1.25021 1.07478 1.22180 0.97056 1.00051 0.82615 1.21900 0.97260 0.94752 1.01141 1.22148 0.96430 0.98559 0.94387 0.90605 1.22538 0.96332 0.97624 0.99572 1.21382 0.94106 0.94718 0.84375 1.44473 1.50982 1.24225 1.14293 1.19299 1.21770 0.99626 0.95833 0.90806 1.25565 0.99922 1.01423 0.98756 1.70151 1.34559 1.34686 1.20310 0.85177 0.76898 0.79479 0.78419 1.20948 1.21813 1.20093 1.21172 0.89813 0.89397 0.95725 0.97408 1.21232 0.92207 0.86127 0.99885 1.21709 0.93152 0.99344 0.96385 0.89747 0.90619 0.90076 0.81148 0.82341 0.91131 0.90682 0.86012 0.86533 0.89847 0.86251 0.91470 0.87002 0.91092 0.89618 0.98429 0.95893 0.94367 0.92765 0.91960 0.83208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.04 71.24 0.72 0.06 16 2 C -0.13 -1.61 5.90 -19.77 -0.12 -1.72 16 3 C 0.08 1.15 10.86 84.68 0.92 2.07 16 4 N -0.51 -9.91 10.36 -195.85 -2.03 -11.94 16 5 C 0.08 1.43 10.86 84.67 0.92 2.35 16 6 C -0.12 -1.97 5.15 -19.77 -0.10 -2.07 16 7 C -0.06 -0.99 4.66 29.85 0.14 -0.85 16 8 C -0.12 -1.91 4.01 29.84 0.12 -1.79 16 9 C 0.50 13.95 7.67 87.65 0.67 14.62 16 10 O -0.59 -22.52 15.35 -3.02 -0.05 -22.57 16 11 N -0.61 -16.81 3.00 -817.93 -2.46 -19.26 16 12 C 0.10 1.79 6.25 86.81 0.54 2.33 16 13 C -0.11 -2.25 5.70 30.70 0.18 -2.07 16 14 C -0.10 -2.97 2.59 -10.21 -0.03 -3.00 16 15 H 0.08 2.43 8.13 -2.39 -0.02 2.41 16 16 C -0.12 -4.22 6.51 31.48 0.20 -4.02 16 17 C 0.18 8.85 5.44 86.85 0.47 9.32 16 18 N -0.61 -32.12 3.34 -669.23 -2.23 -34.35 16 19 C -0.24 -13.68 9.88 84.03 0.83 -12.85 16 20 H 0.07 4.23 7.44 -2.91 -0.02 4.21 16 21 C -0.06 -3.72 5.49 84.86 0.47 -3.26 16 22 N -0.95 -58.01 10.43 21.65 0.23 -57.78 16 23 Si 0.97 47.56 29.55 68.60 2.03 49.59 16 24 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 27 C 0.15 6.04 2.78 45.61 0.13 6.17 16 28 H 0.01 0.37 7.94 -2.39 -0.02 0.35 16 29 C 0.13 4.95 5.68 85.74 0.49 5.43 16 30 C -0.08 -1.06 9.55 22.47 0.21 -0.84 16 31 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.07 0.38 8.10 -2.39 -0.02 0.36 16 33 H 0.08 0.33 8.09 -2.39 -0.02 0.31 16 34 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 36 H 0.07 1.47 8.05 -2.38 -0.02 1.45 16 37 H 0.07 1.46 8.05 -2.39 -0.02 1.44 16 38 H 0.12 1.31 7.98 -2.39 -0.02 1.29 16 39 H 0.12 1.44 7.56 -2.39 -0.02 1.42 16 40 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.12 1.21 5.84 -2.39 -0.01 1.19 16 42 H 0.07 1.42 7.99 -2.39 -0.02 1.40 16 43 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 45 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 46 H 0.00 -0.14 7.77 -2.39 -0.02 -0.16 16 47 H 0.02 1.26 7.19 -2.39 -0.02 1.25 16 48 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 49 H 0.05 2.45 6.79 -2.39 -0.02 2.44 16 50 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 51 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -79.28 400.64 3.15 -76.13 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.90 Total: 10.30 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 6.76 Total: 9.88 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -6.50 Total: -123.34 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -79.28 3.15 -76.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042144147.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.877 kcal (2) G-P(sol) polarization free energy of solvation -79.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds