Wall clock time and date at job start Wed Apr 1 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38345 * 119.46424 * 2 1 4 4 C 1.38357 * 119.30553 * 179.76490 * 3 2 1 5 5 C 1.50706 * 120.85931 * 180.25318 * 4 3 2 6 6 C 1.40026 * 118.28885 * 0.52410 * 4 3 2 7 7 C 1.47838 * 120.56256 * 179.73673 * 6 4 3 8 8 O 1.21554 * 119.99550 * 269.71695 * 7 6 4 9 9 N 1.34772 * 120.00287 * 89.71819 * 7 6 4 10 10 C 1.46592 * 119.75545 * 0.02562 * 9 7 6 11 11 C 1.53888 * 110.71336 * 227.74630 * 10 9 7 12 12 C 1.51981 * 107.29057 * 308.18838 * 11 10 9 13 13 H 1.09003 * 111.57123 * 303.14272 * 12 11 10 14 14 C 1.53701 * 115.00050 * 175.43279 * 12 11 10 15 15 C 1.55298 * 101.81807 * 206.54492 * 14 12 11 16 16 N 1.48155 * 107.04136 * 22.44042 * 15 14 12 17 17 C 1.36938 * 126.39922 * 184.98646 * 16 15 14 18 18 H 1.08000 * 119.99888 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99911 * 0.02562 * 17 16 15 20 20 N 1.31616 * 120.00092 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00120 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46746 * 90.00413 * 21 19 17 23 23 H 1.48498 * 109.47160 * 210.00380 * 21 19 17 24 24 H 1.48497 * 109.47125 * 330.00837 * 21 19 17 25 25 C 1.45506 * 107.20637 * 5.00768 * 16 15 14 26 26 H 1.09000 * 109.57019 * 86.61662 * 25 16 15 27 27 C 1.47802 * 119.75527 * 180.02562 * 9 7 6 28 28 C 1.39523 * 118.87773 * 359.45724 * 6 4 3 29 29 C 1.50701 * 119.71414 * 180.27572 * 28 6 4 30 30 N 1.31697 * 120.56760 * 0.29838 * 28 6 4 31 31 H 1.09001 * 109.46868 * 269.97667 * 1 2 3 32 32 H 1.08997 * 109.46867 * 29.97357 * 1 2 3 33 33 H 1.09001 * 109.47131 * 149.97566 * 1 2 3 34 34 H 1.08002 * 120.35013 * 0.02562 * 3 2 1 35 35 H 1.08997 * 109.47226 * 270.27342 * 5 4 3 36 36 H 1.08999 * 109.46557 * 30.27414 * 5 4 3 37 37 H 1.08994 * 109.47163 * 150.27287 * 5 4 3 38 38 H 1.08994 * 109.22884 * 107.42796 * 10 9 7 39 39 H 1.08999 * 109.23129 * 348.06263 * 10 9 7 40 40 H 1.09002 * 109.89504 * 188.74384 * 11 10 9 41 41 H 1.09001 * 109.95622 * 67.66829 * 11 10 9 42 42 H 1.09005 * 110.96241 * 88.40908 * 14 12 11 43 43 H 1.09001 * 110.95670 * 324.67381 * 14 12 11 44 44 H 1.08994 * 109.91647 * 263.09713 * 15 14 12 45 45 H 1.08997 * 109.91954 * 141.79297 * 15 14 12 46 46 H 0.97001 * 120.00358 * 179.97438 * 20 19 17 47 47 H 1.09003 * 110.06235 * 9.52077 * 27 9 7 48 48 H 1.08998 * 110.06013 * 247.96240 * 27 9 7 49 49 H 1.09006 * 109.46962 * 90.00310 * 29 28 6 50 50 H 1.09001 * 109.46674 * 209.99956 * 29 28 6 51 51 H 1.08997 * 109.47321 * 330.00127 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2045 0.0000 4 6 3.5711 1.2007 0.0050 5 6 4.3476 2.4923 0.0108 6 6 4.2313 -0.0341 -0.0015 7 6 5.7083 -0.0968 -0.0025 8 8 6.3148 -0.1226 -1.0556 9 7 6.3824 -0.1255 1.1642 10 6 5.6456 -0.0948 2.4311 11 6 6.2525 0.9458 3.3887 12 6 7.7433 0.6636 3.4765 13 1 7.9393 -0.3577 3.8031 14 6 8.5480 1.6749 4.3084 15 6 9.9581 1.5636 3.6673 16 7 9.7722 1.0236 2.3002 17 6 10.7637 0.6787 1.4210 18 1 10.5095 0.2932 0.4446 19 6 12.0954 0.8244 1.7846 20 7 12.4051 1.2937 2.9746 21 14 13.4480 0.3546 0.5849 22 1 13.8039 1.5329 -0.2459 23 1 14.6439 -0.0983 1.3399 24 1 12.9713 -0.7442 -0.2929 25 6 8.3392 0.9287 2.0662 26 1 7.9675 1.8805 1.6865 27 6 7.8591 -0.1876 1.1569 28 6 3.4716 -1.2044 -0.0010 29 6 4.1627 -2.5436 -0.0015 30 7 2.1558 -1.1487 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6445 2.1381 0.0004 35 1 4.5344 2.8086 -1.0154 36 1 3.7723 3.2596 0.5287 37 1 5.2978 2.3426 0.5234 38 1 5.6900 -1.0795 2.8962 39 1 4.6046 0.1621 2.2349 40 1 5.7985 0.8514 4.3752 41 1 6.0876 1.9505 2.9994 42 1 8.5730 1.3838 5.3586 43 1 8.1460 2.6815 4.1938 44 1 10.5797 0.8862 4.2527 45 1 10.4223 2.5485 3.6177 46 1 13.3357 1.3952 3.2289 47 1 8.2348 -0.0336 0.1453 48 1 8.1947 -1.1517 1.5389 49 1 4.3300 -2.8665 1.0261 50 1 3.5380 -3.2745 -0.5150 51 1 5.1198 -2.4584 -0.5160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042159639.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:57 Heat of formation + Delta-G solvation = 21.860529 kcal Electronic energy + Delta-G solvation = -31494.634110 eV Core-core repulsion = 27587.191325 eV Total energy + Delta-G solvation = -3907.442785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.17215 -39.70041 -38.14750 -35.40717 -34.42319 -33.93698 -32.90290 -31.28637 -29.83805 -29.17937 -28.55932 -27.96344 -27.32545 -24.73114 -23.99044 -22.30038 -22.27654 -21.28697 -20.20414 -19.86063 -19.14922 -17.43584 -17.18847 -16.51380 -16.10410 -15.23227 -15.08148 -14.80573 -14.72308 -14.44527 -14.33075 -13.90067 -13.59867 -13.48018 -13.47609 -13.30937 -13.13300 -13.00613 -12.93377 -12.61234 -12.48544 -12.29746 -12.23911 -11.98854 -11.92342 -11.79931 -11.54316 -11.34643 -10.95994 -10.83425 -10.76913 -10.19622 -10.12696 -9.99876 -9.91173 -9.69638 -9.64038 -9.53065 -9.47001 -8.92693 -8.64236 -8.48478 -6.87461 -5.73203 -3.07128 0.70391 0.98771 2.60471 3.02937 3.41185 3.41377 3.47021 3.48534 3.91634 4.31445 4.34231 4.45756 4.49918 4.81101 4.87119 4.93819 5.06094 5.12154 5.16076 5.17085 5.26669 5.30881 5.36170 5.38621 5.43760 5.44650 5.48661 5.60067 5.61580 5.65394 5.73976 5.80706 5.86545 5.88865 5.93481 5.98255 6.04210 6.04495 6.09965 6.13865 6.34107 6.42301 6.45259 6.53352 6.67198 6.71723 7.01954 7.46781 7.53583 7.59249 7.74731 7.79829 8.19662 8.22928 9.17670 9.80626 10.46916 11.39081 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.003065 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.491264 B = 9134.219861 C = 9749.820604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.143 3.857 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.125 4.125 6 C -0.176 4.176 7 C 0.567 3.433 8 O -0.531 6.531 9 N -0.596 5.596 10 C 0.110 3.890 11 C -0.118 4.118 12 C -0.112 4.112 13 H 0.078 0.922 14 C -0.138 4.138 15 C 0.177 3.823 16 N -0.591 5.591 17 C -0.229 4.229 18 H 0.080 0.920 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.157 3.843 26 H 0.023 0.977 27 C 0.115 3.885 28 C 0.171 3.829 29 C -0.111 4.111 30 N -0.488 5.488 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.038 0.962 46 H 0.252 0.748 47 H 0.093 0.907 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.272 -1.016 0.191 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.005 3.995 3 C -0.202 4.202 4 C -0.009 4.009 5 C -0.181 4.181 6 C -0.182 4.182 7 C 0.353 3.647 8 O -0.407 6.407 9 N -0.329 5.329 10 C -0.013 4.013 11 C -0.156 4.156 12 C -0.132 4.132 13 H 0.096 0.904 14 C -0.176 4.176 15 C 0.053 3.947 16 N -0.316 5.316 17 C -0.357 4.357 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.569 5.569 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.048 3.952 26 H 0.040 0.960 27 C -0.007 4.007 28 C 0.033 3.967 29 C -0.168 4.168 30 N -0.199 5.199 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.111 0.889 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.101 0.899 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.124 -1.808 -0.370 23.197 hybrid contribution 1.237 0.656 -0.512 1.491 sum -21.887 -1.152 -0.881 21.935 Atomic orbital electron populations 1.20736 0.88582 1.03578 1.03216 1.21379 0.97051 0.88097 0.92956 1.21732 0.93596 0.99476 1.05433 1.20337 0.93750 0.94505 0.92306 1.20943 1.00252 0.93231 1.03717 1.20672 0.94733 0.94594 1.08154 1.18054 0.86177 0.76430 0.84055 1.90816 1.69165 1.49863 1.30872 1.48283 1.07685 1.71735 1.05196 1.21691 0.95223 0.99911 0.84470 1.21789 0.96469 0.98757 0.98608 1.22268 0.92702 0.99993 0.98255 0.90353 1.22730 0.98806 0.97666 0.98408 1.21544 0.90182 0.98469 0.84476 1.44168 0.98413 1.75222 1.13838 1.19039 0.85079 1.36506 0.95048 0.90264 1.24778 0.97083 1.01307 0.97026 1.69939 1.16880 1.51044 1.19013 0.86149 0.81707 0.78186 0.79958 1.21586 1.21696 1.20549 1.20967 0.86877 0.94901 0.92414 0.95985 1.21807 0.75947 1.00090 1.02850 1.21265 0.88830 0.94590 0.92050 1.20822 1.00285 0.92169 1.03557 1.67366 1.08784 1.29118 1.14659 0.90188 0.90591 0.90346 0.84343 0.89770 0.90373 0.90518 0.91568 0.90790 0.90833 0.91442 0.92214 0.92591 0.92598 0.94428 0.93746 0.88862 0.90899 0.89846 0.89865 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.16 36.01 0.37 -0.32 16 2 C 0.14 1.46 6.78 -82.51 -0.56 0.90 16 3 C -0.18 -1.77 9.43 -39.50 -0.37 -2.15 16 4 C 0.00 -0.01 5.67 -103.91 -0.59 -0.60 16 5 C -0.13 -1.34 9.69 36.01 0.35 -0.99 16 6 C -0.18 -2.41 3.65 -104.82 -0.38 -2.79 16 7 C 0.57 9.17 4.21 -12.33 -0.05 9.12 16 8 O -0.53 -10.64 16.47 5.32 0.09 -10.55 16 9 N -0.60 -9.13 3.01 -173.86 -0.52 -9.66 16 10 C 0.11 1.35 6.23 -3.53 -0.02 1.33 16 11 C -0.12 -1.48 5.72 -26.79 -0.15 -1.63 16 12 C -0.11 -1.84 2.61 -89.51 -0.23 -2.08 16 13 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 14 C -0.14 -2.43 6.54 -25.15 -0.16 -2.60 16 15 C 0.18 4.17 5.45 -1.91 -0.01 4.16 16 16 N -0.59 -14.62 3.35 -162.91 -0.55 -15.16 16 17 C -0.23 -6.26 9.88 -15.06 -0.15 -6.41 16 18 H 0.08 2.13 7.41 -52.49 -0.39 1.74 16 19 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 20 N -0.92 -26.75 10.44 55.49 0.58 -26.17 16 21 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.16 3.14 2.76 -67.82 -0.19 2.96 16 26 H 0.02 0.48 7.93 -51.93 -0.41 0.07 16 27 C 0.11 2.14 5.69 -3.95 -0.02 2.11 16 28 C 0.17 2.21 6.82 -82.17 -0.56 1.65 16 29 C -0.11 -1.27 9.79 36.01 0.35 -0.91 16 30 N -0.49 -6.03 10.17 -5.42 -0.06 -6.08 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.08 0.97 7.19 -51.93 -0.37 0.60 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.84 6.06 -51.93 -0.31 0.52 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.86 7.98 -51.93 -0.41 0.45 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 44 H 0.06 1.46 7.21 -51.93 -0.37 1.08 16 45 H 0.04 0.98 7.77 -51.93 -0.40 0.57 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.09 1.97 6.76 -51.93 -0.35 1.61 16 48 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.08 1.02 7.07 -51.93 -0.37 0.65 16 LS Contribution 398.33 15.07 6.00 6.00 Total: -1.00 -32.46 398.33 -10.41 -42.87 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.45 Total: 0.05 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.49 Total: 1.51 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.54 Total: -57.07 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.46 -10.41 -42.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042159639.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.733 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds