Wall clock time and date at job start Wed Apr 1 2020 03:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38355 * 119.45668 * 2 1 4 4 C 1.38359 * 119.30053 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.85656 * 180.02562 * 4 3 2 6 6 C 1.40026 * 118.28671 * 0.02562 * 4 3 2 7 7 C 1.47838 * 120.55786 * 180.02562 * 6 4 3 8 8 O 1.21548 * 120.00519 * 89.99751 * 7 6 4 9 9 N 1.34780 * 119.99640 * 269.99896 * 7 6 4 10 10 C 1.47153 * 121.22225 * 359.97438 * 9 7 6 11 11 C 1.52836 * 107.97950 * 237.26784 * 10 9 7 12 12 C 1.53095 * 110.57792 * 302.65450 * 11 10 9 13 13 H 1.08994 * 112.49256 * 289.43563 * 12 11 10 14 14 C 1.56028 * 106.38769 * 164.56488 * 12 11 10 15 15 C 1.54500 * 102.61313 * 281.62238 * 14 12 11 16 16 N 1.47432 * 107.14829 * 337.15443 * 15 14 12 17 17 C 1.36940 * 126.06304 * 178.40232 * 16 15 14 18 18 H 1.07997 * 120.00242 * 179.97438 * 17 16 15 19 19 C 1.38810 * 119.99463 * 359.97046 * 17 16 15 20 20 N 1.31621 * 120.00400 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99850 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46881 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47454 * 119.99923 * 21 19 17 24 24 H 1.48497 * 109.47106 * 240.00493 * 21 19 17 25 25 C 1.46467 * 107.87691 * 358.37590 * 16 15 14 26 26 H 1.09001 * 108.42571 * 270.10105 * 25 16 15 27 27 C 1.45684 * 120.98150 * 180.43184 * 9 7 6 28 28 C 1.39519 * 118.88271 * 0.27386 * 6 4 3 29 29 C 1.50708 * 119.71611 * 179.72749 * 28 6 4 30 30 N 1.31699 * 120.56656 * 359.40543 * 28 6 4 31 31 H 1.09005 * 109.46397 * 90.00455 * 1 2 3 32 32 H 1.08996 * 109.47463 * 209.99979 * 1 2 3 33 33 H 1.08993 * 109.46997 * 330.00746 * 1 2 3 34 34 H 1.07991 * 120.34893 * 359.97361 * 3 2 1 35 35 H 1.09005 * 109.47304 * 269.97964 * 5 4 3 36 36 H 1.08995 * 109.46895 * 29.97850 * 5 4 3 37 37 H 1.08997 * 109.47399 * 149.97845 * 5 4 3 38 38 H 1.09001 * 109.75667 * 117.64434 * 10 9 7 39 39 H 1.09005 * 109.75368 * 356.88681 * 10 9 7 40 40 H 1.08993 * 109.25417 * 62.94217 * 11 10 9 41 41 H 1.08996 * 109.24864 * 182.40723 * 11 10 9 42 42 H 1.09005 * 110.78297 * 39.90257 * 14 12 11 43 43 H 1.08996 * 110.78095 * 163.34040 * 14 12 11 44 44 H 1.08997 * 109.90335 * 217.77135 * 15 14 12 45 45 H 1.09001 * 109.90702 * 96.53366 * 15 14 12 46 46 H 0.97005 * 119.99761 * 180.02562 * 20 19 17 47 47 H 1.09008 * 109.61195 * 6.89577 * 27 9 7 48 48 H 1.09001 * 108.19487 * 247.88539 * 27 9 7 49 49 H 1.09003 * 109.46831 * 89.99647 * 29 28 6 50 50 H 1.09000 * 109.46739 * 209.99701 * 29 28 6 51 51 H 1.08993 * 109.46939 * 329.99888 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2009 0.0005 5 6 4.3474 2.4925 0.0011 6 6 4.2312 -0.0339 0.0005 7 6 5.7083 -0.0965 0.0016 8 8 6.3147 -0.1227 1.0547 9 7 6.3824 -0.1246 -1.1651 10 6 5.6755 -0.0946 -2.4554 11 6 6.0862 -1.3356 -3.2473 12 6 7.6055 -1.3783 -3.4311 13 1 7.9637 -0.6139 -4.1206 14 6 7.9543 -2.8320 -3.8777 15 6 7.8954 -3.6167 -2.5481 16 7 8.1013 -2.6438 -1.4597 17 6 8.0916 -2.9205 -0.1186 18 1 8.2546 -2.1286 0.5974 19 6 7.8722 -4.2190 0.3205 20 7 7.6740 -5.1842 -0.5521 21 14 7.8583 -4.5964 2.1499 22 1 8.1035 -3.3474 2.9149 23 1 6.5368 -5.1575 2.5296 24 1 8.9230 -5.5842 2.4596 25 6 8.3187 -1.3289 -2.0671 26 1 9.3872 -1.2023 -2.2415 27 6 7.8373 -0.1957 -1.1891 28 6 3.4716 -1.2042 -0.0059 29 6 4.1628 -2.5434 -0.0122 30 7 2.1558 -1.1486 0.0000 31 1 -0.3632 -0.0001 -1.0278 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.6443 2.1381 -0.0004 35 1 4.5354 2.8039 -1.0264 36 1 3.7715 3.2623 0.5146 37 1 5.2970 2.3453 0.5156 38 1 5.9537 0.8034 -3.0071 39 1 4.5988 -0.1052 -2.2859 40 1 5.7639 -2.2276 -2.7102 41 1 5.6067 -1.3124 -4.2258 42 1 7.2126 -3.2086 -4.5822 43 1 8.9548 -2.8748 -4.3081 44 1 8.6830 -4.3698 -2.5266 45 1 6.9207 -4.0926 -2.4409 46 1 7.5204 -6.0915 -0.2452 47 1 8.2132 -0.3418 -0.1763 48 1 8.2178 0.7479 -1.5804 49 1 4.3288 -2.8714 1.0139 50 1 3.5388 -3.2718 -0.5301 51 1 5.1205 -2.4555 -0.5250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042159641.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:06 Heat of formation + Delta-G solvation = 23.567739 kcal Electronic energy + Delta-G solvation = -32903.096270 eV Core-core repulsion = 28995.727515 eV Total energy + Delta-G solvation = -3907.368755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.87686 -39.54813 -37.91344 -34.99885 -34.17842 -33.60772 -32.84286 -31.18713 -29.49660 -28.80472 -28.38350 -27.80487 -27.07708 -24.64846 -23.97034 -22.55527 -22.08298 -21.02349 -20.01326 -19.81232 -18.38732 -17.12623 -16.95685 -16.53778 -15.76925 -15.00706 -14.95021 -14.71341 -14.42158 -14.24515 -14.01543 -13.92189 -13.42704 -13.39098 -13.10508 -12.97537 -12.89410 -12.81705 -12.71673 -12.45657 -12.23219 -11.99683 -11.71214 -11.65388 -11.61185 -11.52952 -11.39068 -11.21941 -10.89148 -10.78040 -10.70394 -10.06927 -9.90135 -9.86527 -9.72391 -9.63956 -9.50184 -9.41764 -9.16641 -8.61660 -8.52354 -8.14988 -6.75980 -5.63656 -2.95555 0.99658 1.25183 2.97895 3.39529 3.46786 3.54653 3.60663 3.71628 4.24193 4.53224 4.58368 4.63051 4.74956 5.05690 5.07494 5.11306 5.25606 5.30961 5.38581 5.43041 5.44719 5.47070 5.49898 5.54083 5.64283 5.68721 5.72326 5.75442 5.79491 5.91730 5.94933 5.98367 6.03487 6.13401 6.15706 6.20834 6.26637 6.29951 6.36077 6.43339 6.47604 6.56712 6.62643 6.74565 6.84408 6.96038 7.09168 7.63438 7.65546 7.81538 7.92559 8.07430 8.30486 8.59672 9.30317 9.90744 10.55197 11.48328 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.005107 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.482976 B = 5481.463524 C = 6397.260333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.140 3.860 3 C -0.189 4.189 4 C -0.009 4.009 5 C -0.120 4.120 6 C -0.175 4.175 7 C 0.578 3.422 8 O -0.525 6.525 9 N -0.584 5.584 10 C 0.113 3.887 11 C -0.123 4.123 12 C -0.101 4.101 13 H 0.075 0.925 14 C -0.143 4.143 15 C 0.179 3.821 16 N -0.589 5.589 17 C -0.213 4.213 18 H 0.082 0.918 19 C -0.003 4.003 20 N -0.922 5.922 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.293 1.293 25 C 0.154 3.846 26 H 0.029 0.971 27 C 0.112 3.888 28 C 0.183 3.817 29 C -0.113 4.113 30 N -0.489 5.489 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.041 0.959 45 H 0.046 0.954 46 H 0.249 0.751 47 H 0.097 0.903 48 H 0.052 0.948 49 H 0.082 0.918 50 H 0.077 0.923 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.115 14.290 -6.639 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.002 3.998 3 C -0.209 4.209 4 C -0.017 4.017 5 C -0.177 4.177 6 C -0.180 4.180 7 C 0.364 3.636 8 O -0.401 6.401 9 N -0.316 5.316 10 C -0.010 4.010 11 C -0.162 4.162 12 C -0.120 4.120 13 H 0.093 0.907 14 C -0.182 4.182 15 C 0.054 3.946 16 N -0.314 5.314 17 C -0.341 4.341 18 H 0.099 0.901 19 C -0.199 4.199 20 N -0.571 5.571 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.220 1.220 25 C 0.045 3.955 26 H 0.046 0.954 27 C -0.011 4.011 28 C 0.045 3.955 29 C -0.170 4.170 30 N -0.200 5.200 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.115 0.885 48 H 0.070 0.930 49 H 0.100 0.900 50 H 0.095 0.905 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.267 13.311 -5.895 17.814 hybrid contribution 0.390 0.356 0.908 1.051 sum -9.877 13.667 -4.987 17.584 Atomic orbital electron populations 1.20716 0.88851 1.03405 1.03029 1.21377 0.96962 0.88243 0.93186 1.21644 0.93600 0.99233 1.06445 1.20270 0.93736 0.94368 0.93303 1.20870 1.00376 0.93405 1.02999 1.20710 0.95023 0.94376 1.07936 1.17790 0.85885 0.76091 0.83811 1.90796 1.69041 1.49466 1.30778 1.47531 1.07184 1.71865 1.05029 1.21614 0.96513 0.98521 0.84340 1.21853 0.96205 0.98800 0.99298 1.22360 0.94865 0.97379 0.97435 0.90660 1.23160 0.99840 0.95417 0.99761 1.21216 1.00585 0.90362 0.82438 1.44305 1.84058 1.00967 1.02101 1.19061 1.40991 0.93352 0.80695 0.90068 1.24639 1.02388 0.95838 0.97050 1.69961 1.55866 1.00101 1.31150 0.86247 0.77207 0.78032 0.85809 1.20209 1.21843 1.22010 1.20710 0.96250 0.87684 0.90836 0.95425 1.21254 0.79002 0.97336 1.03532 1.21552 0.88506 0.95228 0.90237 1.20923 1.00989 0.90906 1.04177 1.67428 1.09093 1.28902 1.14588 0.90359 0.90393 0.90808 0.84718 0.90256 0.90702 0.90645 0.91765 0.90937 0.89969 0.92050 0.92328 0.92750 0.94117 0.93630 0.94068 0.88459 0.92988 0.89972 0.90461 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 10.16 36.01 0.37 -0.58 16 2 C 0.14 1.85 6.78 -82.51 -0.56 1.29 16 3 C -0.19 -2.26 9.43 -39.49 -0.37 -2.63 16 4 C -0.01 -0.12 5.95 -103.91 -0.62 -0.74 16 5 C -0.12 -1.33 9.69 36.00 0.35 -0.98 16 6 C -0.18 -2.99 3.68 -104.82 -0.39 -3.37 16 7 C 0.58 11.06 4.24 -12.33 -0.05 11.01 16 8 O -0.52 -12.15 16.54 5.32 0.09 -12.07 16 9 N -0.58 -10.02 2.95 -176.09 -0.52 -10.54 16 10 C 0.11 1.60 6.36 -3.77 -0.02 1.57 16 11 C -0.12 -1.87 5.04 -26.77 -0.13 -2.00 16 12 C -0.10 -1.59 3.68 -88.43 -0.33 -1.92 16 13 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.14 -2.50 6.33 -24.32 -0.15 -2.65 16 15 C 0.18 4.09 4.61 -2.74 -0.01 4.07 16 16 N -0.59 -13.91 3.19 -164.45 -0.52 -14.43 16 17 C -0.21 -5.72 9.68 -15.06 -0.15 -5.87 16 18 H 0.08 2.28 6.48 -52.49 -0.34 1.94 16 19 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 20 N -0.92 -26.48 10.38 55.49 0.58 -25.91 16 21 Si 0.90 23.04 29.55 -169.99 -5.02 18.02 16 22 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 24 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 25 C 0.15 2.93 3.01 -68.33 -0.21 2.73 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 C 0.11 2.02 5.57 -5.38 -0.03 1.99 16 28 C 0.18 3.26 6.75 -82.17 -0.55 2.71 16 29 C -0.11 -2.21 9.79 36.01 0.35 -1.86 16 30 N -0.49 -8.03 10.17 -5.41 -0.06 -8.09 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.66 8.10 -51.93 -0.42 0.23 16 37 H 0.07 0.99 7.19 -51.93 -0.37 0.62 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.02 6.34 -51.93 -0.33 0.69 16 40 H 0.08 1.54 6.43 -51.93 -0.33 1.21 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.93 7.97 -51.93 -0.41 0.52 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.04 1.06 7.57 -51.93 -0.39 0.67 16 45 H 0.05 1.16 7.04 -51.93 -0.37 0.80 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.10 2.07 5.48 -51.92 -0.28 1.79 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 50 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 51 H 0.10 2.21 6.65 -51.93 -0.35 1.87 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -32.01 393.59 -10.36 -42.37 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.23 Total: 2.13 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -2.60 Total: 2.58 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.52 Total: -58.97 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.01 -10.36 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042159641.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.939 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds