Wall clock time and date at job start Wed Apr 1 2020 02:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.46293 * 2 1 4 4 C 1.34772 * 120.00067 * 60.02951 * 3 2 1 5 5 O 1.21518 * 119.99997 * 359.97438 * 4 3 2 6 6 C 1.48175 * 120.00201 * 180.02562 * 4 3 2 7 7 C 1.39171 * 119.81989 * 179.97438 * 6 4 3 8 8 C 1.39004 * 119.24782 * 179.97438 * 7 6 4 9 9 C 1.37867 * 118.56167 * 359.79719 * 8 7 6 10 10 C 1.39118 * 119.06989 * 0.29408 * 9 8 7 11 11 N 1.31321 * 121.19915 * 359.79627 * 10 9 8 12 12 C 1.50500 * 122.48350 * 180.36250 * 9 8 7 13 13 C 1.52786 * 110.49231 * 342.25056 * 12 9 8 14 14 C 1.53309 * 108.51843 * 51.08650 * 13 12 9 15 15 C 1.50351 * 118.61618 * 179.49971 * 8 7 6 16 16 C 1.53037 * 109.44970 * 119.96875 * 2 1 3 17 17 C 1.53190 * 109.31398 * 181.37520 * 16 2 1 18 18 N 1.46926 * 108.77630 * 305.36616 * 17 16 2 19 19 C 1.36940 * 120.62742 * 233.63060 * 18 17 16 20 20 H 1.08000 * 120.00295 * 27.66525 * 19 18 17 21 21 C 1.38814 * 119.99697 * 207.66259 * 19 18 17 22 22 N 1.31618 * 119.99885 * 17.36582 * 21 19 18 23 23 Si 1.86799 * 119.99767 * 197.35869 * 21 19 18 24 24 H 1.48503 * 109.46861 * 60.00439 * 23 21 19 25 25 H 1.48502 * 109.46749 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47525 * 300.00308 * 23 21 19 27 27 C 1.46925 * 118.74053 * 53.60687 * 18 17 16 28 28 C 1.53046 * 109.45812 * 240.02724 * 2 1 3 29 29 H 1.09006 * 109.46900 * 59.99652 * 1 2 3 30 30 H 1.08992 * 109.47592 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46810 * 300.00495 * 1 2 3 32 32 H 0.97003 * 119.99904 * 240.02649 * 3 2 1 33 33 H 1.08003 * 120.38145 * 0.02562 * 7 6 4 34 34 H 1.08000 * 119.40236 * 179.82069 * 10 9 8 35 35 H 1.09008 * 109.29840 * 102.56285 * 12 9 8 36 36 H 1.09000 * 109.30049 * 221.93650 * 12 9 8 37 37 H 1.09000 * 109.63091 * 170.79621 * 13 12 9 38 38 H 1.08996 * 109.62449 * 291.37616 * 13 12 9 39 39 H 1.08999 * 109.64323 * 170.49223 * 14 13 12 40 40 H 1.08998 * 109.64208 * 49.86771 * 14 13 12 41 41 H 1.09000 * 109.30784 * 283.00020 * 15 8 7 42 42 H 1.09001 * 109.30530 * 42.39961 * 15 8 7 43 43 H 1.09000 * 109.49608 * 301.32833 * 16 2 1 44 44 H 1.09000 * 109.49868 * 61.42288 * 16 2 1 45 45 H 1.09005 * 109.58844 * 185.57394 * 17 16 2 46 46 H 1.09007 * 109.58734 * 65.15440 * 17 16 2 47 47 H 0.97000 * 119.99706 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.58471 * 186.60898 * 27 18 17 49 49 H 1.08995 * 109.70210 * 66.24575 * 27 18 17 50 50 H 1.08998 * 109.49408 * 298.57969 * 28 2 1 51 51 H 1.08998 * 109.49739 * 58.64516 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6929 2.2109 1.0111 5 8 0.9944 1.8133 1.9225 6 6 2.1861 3.6081 1.0108 7 6 1.8476 4.4618 2.0566 8 6 2.3172 5.7700 2.0446 9 6 3.1102 6.1761 0.9924 10 6 3.4068 5.2689 -0.0198 11 7 2.9490 4.0385 0.0137 12 6 3.6725 7.5686 0.8945 13 6 2.9119 8.5187 1.8181 14 6 2.8597 7.8981 3.2190 15 6 1.9334 6.6833 3.1756 16 6 2.0396 -0.7208 1.2501 17 6 3.5711 -0.6890 1.2644 18 7 4.0676 -1.2494 0.0002 19 6 4.9752 -2.2748 0.0004 20 1 5.0078 -2.9671 0.8287 21 6 5.8534 -2.4244 -1.0642 22 7 6.0601 -1.4227 -1.8926 23 14 6.7420 -4.0474 -1.3208 24 1 5.7462 -5.1304 -1.5223 25 1 7.6153 -3.9496 -2.5179 26 1 7.5704 -4.3525 -0.1267 27 6 3.5713 -0.6891 -1.2641 28 6 2.0398 -0.7209 -1.2501 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.5754 1.6987 -0.7277 33 1 1.2276 4.1116 2.8686 34 1 4.0250 5.5822 -0.8481 35 1 4.7243 7.5533 1.1804 36 1 3.5869 7.9203 -0.1337 37 1 3.4275 9.4781 1.8617 38 1 1.8986 8.6612 1.4427 39 1 2.4726 8.6287 3.9293 40 1 3.8599 7.5856 3.5188 41 1 0.9058 7.0185 3.0353 42 1 2.0068 6.1404 4.1179 43 1 1.6569 -0.2207 2.1398 44 1 1.6973 -1.7556 1.2383 45 1 3.9412 -1.2850 2.0987 46 1 3.9143 0.3404 1.3676 47 1 6.6741 -1.5272 -2.6362 48 1 3.9415 -1.2852 -2.0982 49 1 3.9144 0.3401 -1.3697 50 1 1.6975 -1.7557 -1.2382 51 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045496154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:46 Heat of formation + Delta-G solvation = 3.482988 kcal Electronic energy + Delta-G solvation = -30870.445082 eV Core-core repulsion = 26962.205388 eV Total energy + Delta-G solvation = -3908.239695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.00912 -39.77358 -37.50281 -36.77615 -34.36835 -33.01735 -32.19940 -31.31999 -30.59552 -29.89444 -29.45353 -27.36260 -24.81962 -24.14596 -23.93964 -22.89814 -22.23976 -21.64226 -20.65086 -19.55436 -18.57047 -17.76938 -16.90571 -16.39382 -15.85706 -15.40943 -15.05523 -14.84359 -14.77752 -14.56221 -14.23834 -14.03059 -13.85659 -13.67368 -13.35398 -13.27439 -13.05241 -13.04227 -12.87349 -12.46410 -12.40928 -12.20855 -11.74790 -11.58011 -11.30605 -11.28695 -11.24920 -11.14894 -10.90949 -10.87941 -10.66871 -10.33344 -10.24975 -9.95287 -9.81858 -9.60432 -9.56856 -9.51698 -9.08862 -9.01320 -8.53207 -8.39536 -6.60362 -5.74132 -3.15155 0.64517 1.12149 2.90972 3.41160 3.43219 3.46663 3.48451 3.91355 4.17151 4.30351 4.33193 4.50711 4.54105 4.62175 4.67255 4.93263 5.01961 5.12405 5.14741 5.30957 5.32971 5.39462 5.43121 5.46689 5.51620 5.57971 5.58718 5.61442 5.65983 5.68106 5.75329 5.90146 5.92996 6.05206 6.11456 6.15121 6.25436 6.37883 6.40541 6.46588 6.53554 6.60625 6.73151 6.77569 6.88703 7.03446 7.14176 7.36852 7.66549 7.70221 7.83698 8.05272 8.49968 8.56673 9.26526 9.90360 10.47913 11.34302 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015089 B = 0.002819 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.221564 B = 9929.318824 C =10915.877839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.181 3.819 3 N -0.686 5.686 4 C 0.571 3.429 5 O -0.540 6.540 6 C 0.079 3.921 7 C -0.113 4.113 8 C -0.045 4.045 9 C -0.114 4.114 10 C 0.103 3.897 11 N -0.454 5.454 12 C -0.079 4.079 13 C -0.120 4.120 14 C -0.121 4.121 15 C -0.083 4.083 16 C -0.143 4.143 17 C 0.150 3.850 18 N -0.590 5.590 19 C -0.250 4.250 20 H 0.064 0.936 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.172 3.828 28 C -0.146 4.146 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.411 0.589 33 H 0.146 0.854 34 H 0.160 0.840 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.014 0.986 47 H 0.253 0.747 48 H 0.089 0.911 49 H 0.018 0.982 50 H 0.072 0.928 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 19.939 5.500 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 N -0.336 5.336 4 C 0.355 3.645 5 O -0.418 6.418 6 C -0.057 4.057 7 C -0.134 4.134 8 C -0.053 4.053 9 C -0.116 4.116 10 C -0.059 4.059 11 N -0.164 5.164 12 C -0.116 4.116 13 C -0.158 4.158 14 C -0.158 4.158 15 C -0.120 4.120 16 C -0.182 4.182 17 C 0.024 3.976 18 N -0.313 5.313 19 C -0.380 4.380 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.046 3.954 28 C -0.185 4.185 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.248 0.752 33 H 0.164 0.836 34 H 0.178 0.822 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.032 0.968 47 H 0.063 0.937 48 H 0.107 0.893 49 H 0.036 0.964 50 H 0.090 0.910 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.429 18.975 5.322 21.846 hybrid contribution 0.680 -0.145 0.014 0.696 sum -8.749 18.829 5.336 21.437 Atomic orbital electron populations 1.22228 0.95365 1.01931 1.02334 1.20342 0.92655 0.79982 0.97391 1.46027 1.51523 1.11595 1.24452 1.17785 0.80309 0.83813 0.82569 1.90684 1.38781 1.76108 1.36234 1.21268 0.96928 0.95349 0.92176 1.22097 0.99374 0.92771 0.99189 1.19841 0.95668 0.94131 0.95648 1.20736 0.98234 0.97596 0.95077 1.22843 0.97222 0.88134 0.97666 1.67549 1.07929 1.16499 1.24468 1.20435 0.99907 0.90344 1.00944 1.21565 1.00925 0.98221 0.95087 1.21579 1.00188 0.96777 0.97278 1.20484 1.00143 0.95262 0.96085 1.22398 0.99032 0.99646 0.97172 1.20829 0.90859 0.96074 0.89833 1.44027 1.48278 1.39577 0.99427 1.19158 1.09816 1.02902 1.06088 0.91812 1.25014 0.97252 0.97401 1.00046 1.70024 1.37778 1.28975 1.17990 0.86383 0.79236 0.83972 0.77262 1.21095 1.21694 1.20987 1.20743 0.86774 0.97260 0.90669 1.22523 1.01548 0.99917 0.94535 0.93325 0.92126 0.90925 0.75211 0.83629 0.82243 0.89990 0.90131 0.91122 0.91516 0.91099 0.91351 0.89967 0.90011 0.90909 0.91737 0.93157 0.96803 0.93679 0.89276 0.96381 0.90972 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 8.40 37.16 0.31 -2.25 16 2 C 0.18 3.28 0.66 -131.78 -0.09 3.19 16 3 N -0.69 -12.22 4.09 -48.40 -0.20 -12.42 16 4 C 0.57 10.06 7.23 -12.18 -0.09 9.97 16 5 O -0.54 -10.22 12.54 5.35 0.07 -10.15 16 6 C 0.08 1.24 6.75 -83.05 -0.56 0.68 16 7 C -0.11 -1.49 9.26 -38.95 -0.36 -1.85 16 8 C -0.05 -0.48 5.74 -104.64 -0.60 -1.08 16 9 C -0.11 -1.16 5.75 -104.53 -0.60 -1.76 16 10 C 0.10 1.22 10.79 -17.44 -0.19 1.04 16 11 N -0.45 -6.85 9.55 -9.73 -0.09 -6.95 16 12 C -0.08 -0.54 5.71 -28.09 -0.16 -0.71 16 13 C -0.12 -0.70 5.97 -26.68 -0.16 -0.86 16 14 C -0.12 -0.75 5.98 -26.66 -0.16 -0.91 16 15 C -0.08 -0.63 5.71 -28.14 -0.16 -0.79 16 16 C -0.14 -2.80 4.67 -26.61 -0.12 -2.92 16 17 C 0.15 3.42 6.26 -3.71 -0.02 3.39 16 18 N -0.59 -15.08 2.99 -172.32 -0.52 -15.59 16 19 C -0.25 -6.98 9.59 -15.06 -0.14 -7.13 16 20 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 21 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 22 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 23 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.17 4.06 5.04 -3.71 -0.02 4.04 16 28 C -0.15 -2.78 4.96 -26.61 -0.13 -2.91 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.23 6.16 -51.93 -0.32 0.91 16 32 H 0.41 7.43 6.60 -40.82 -0.27 7.16 16 33 H 0.15 1.83 7.64 -52.48 -0.40 1.43 16 34 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.43 6.20 -51.93 -0.32 1.11 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 46 H 0.01 0.33 7.74 -51.93 -0.40 -0.07 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.09 2.36 6.03 -51.93 -0.31 2.05 16 49 H 0.02 0.45 6.94 -51.93 -0.36 0.09 16 50 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 51 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -31.63 389.88 -10.88 -42.51 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.26 Total: 6.36 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -3.34 Total: -0.91 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.19 Total: -60.59 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.15 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.63 -10.88 -42.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045496154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.992 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds