Wall clock time and date at job start Wed Apr 1 2020 02:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.45982 * 2 1 4 4 C 1.34779 * 120.00078 * 60.00427 * 3 2 1 5 5 O 1.21274 * 119.99735 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99811 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.22505 * 59.45306 * 6 4 3 8 8 C 1.52727 * 109.25355 * 178.90532 * 6 4 3 9 9 C 1.53320 * 108.45345 * 171.57767 * 8 6 4 10 10 C 1.52778 * 108.35704 * 290.18922 * 9 8 6 11 11 C 1.50490 * 110.61460 * 50.69603 * 10 9 8 12 12 C 1.39189 * 117.97633 * 162.29868 * 11 10 9 13 13 C 1.38404 * 118.86219 * 179.62357 * 12 11 10 14 14 C 1.38246 * 118.84526 * 0.27117 * 13 12 11 15 15 N 1.31503 * 120.60931 * 0.16137 * 14 13 12 16 16 C 1.32706 * 122.40329 * 359.91640 * 15 14 13 17 17 C 1.53037 * 109.45981 * 119.97216 * 2 1 3 18 18 C 1.53161 * 109.32583 * 181.38375 * 17 2 1 19 19 N 1.46922 * 108.77142 * 305.35697 * 18 17 2 20 20 C 1.36942 * 120.63112 * 233.63721 * 19 18 17 21 21 H 1.08003 * 119.99837 * 151.80978 * 20 19 18 22 22 C 1.38813 * 119.99967 * 331.79847 * 20 19 18 23 23 N 1.31623 * 120.00082 * 343.09812 * 22 20 19 24 24 Si 1.86799 * 120.00128 * 163.08543 * 22 20 19 25 25 H 1.48502 * 109.46855 * 90.00470 * 24 22 20 26 26 H 1.48489 * 109.47622 * 210.00723 * 24 22 20 27 27 H 1.48507 * 109.47025 * 330.00906 * 24 22 20 28 28 C 1.46922 * 118.74130 * 53.60524 * 19 18 17 29 29 C 1.53044 * 109.45887 * 240.02879 * 2 1 3 30 30 H 1.09000 * 109.46790 * 59.99876 * 1 2 3 31 31 H 1.08996 * 109.47023 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46852 * 299.99920 * 1 2 3 33 33 H 0.97008 * 120.00194 * 239.99713 * 3 2 1 34 34 H 1.08996 * 109.63468 * 291.26355 * 8 6 4 35 35 H 1.08999 * 109.63700 * 51.67716 * 8 6 4 36 36 H 1.08995 * 109.68715 * 49.90881 * 9 8 6 37 37 H 1.08999 * 109.68427 * 170.47908 * 9 8 6 38 38 H 1.09001 * 109.25655 * 171.17743 * 10 9 8 39 39 H 1.08992 * 109.25990 * 290.65681 * 10 9 8 40 40 H 1.08000 * 120.56991 * 359.90062 * 12 11 10 41 41 H 1.08000 * 120.58097 * 180.24669 * 13 12 11 42 42 H 1.08004 * 119.69205 * 180.13098 * 14 13 12 43 43 H 1.09001 * 109.49949 * 301.32859 * 17 2 1 44 44 H 1.09006 * 109.49732 * 61.42134 * 17 2 1 45 45 H 1.09005 * 109.59064 * 185.57209 * 18 17 2 46 46 H 1.08994 * 109.59360 * 65.14163 * 18 17 2 47 47 H 0.96999 * 119.99846 * 179.97438 * 23 22 20 48 48 H 1.08994 * 109.59442 * 186.60462 * 28 19 18 49 49 H 1.09006 * 109.69891 * 66.25350 * 28 19 18 50 50 H 1.09000 * 109.49512 * 298.57831 * 29 2 1 51 51 H 1.09000 * 109.49849 * 58.67403 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6924 2.2111 1.0109 5 8 0.9950 1.8144 1.9202 6 6 2.1950 3.6318 1.0111 7 1 1.8377 4.1390 0.1149 8 6 1.6607 4.3548 2.2458 9 6 2.3468 5.7225 2.3421 10 6 3.8134 5.5003 2.7081 11 6 4.4414 4.4878 1.7887 12 6 5.8309 4.4370 1.7250 13 6 6.4279 3.5074 0.8914 14 6 5.6231 2.6654 0.1467 15 7 4.3131 2.7479 0.2261 16 6 3.7021 3.6259 1.0115 17 6 2.0399 -0.7209 1.2500 18 6 3.5711 -0.6889 1.2644 19 7 4.0676 -1.2493 0.0003 20 6 4.9753 -2.2747 0.0004 21 1 5.0026 -2.9718 -0.8240 22 6 5.8604 -2.4181 1.0601 23 7 6.0655 -1.4144 1.8866 24 14 6.7600 -4.0354 1.3135 25 1 8.0444 -4.0093 0.5686 26 1 7.0308 -4.2299 2.7605 27 1 5.9199 -5.1529 0.8126 28 6 3.5714 -0.6891 -1.2640 29 6 2.0399 -0.7209 -1.2501 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.5758 1.6987 -0.7275 34 1 0.5833 4.4912 2.1527 35 1 1.8800 3.7677 3.1376 36 1 2.2814 6.2346 1.3822 37 1 1.8630 6.3225 3.1128 38 1 4.3511 6.4450 2.6275 39 1 3.8769 5.1369 3.7337 40 1 6.4329 5.1085 2.3193 41 1 7.5037 3.4412 0.8234 42 1 6.0746 1.9334 -0.5067 43 1 1.6574 -0.2209 2.1398 44 1 1.6976 -1.7557 1.2382 45 1 3.9413 -1.2849 2.0987 46 1 3.9143 0.3405 1.3675 47 1 6.6838 -1.5147 2.6273 48 1 3.9416 -1.2850 -2.0981 49 1 3.9146 0.3401 -1.3697 50 1 1.6976 -1.7557 -1.2383 51 1 1.6574 -0.2208 -2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045533187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:58 Heat of formation + Delta-G solvation = 13.625059 kcal Electronic energy + Delta-G solvation = -32783.121778 eV Core-core repulsion = 28875.321877 eV Total energy + Delta-G solvation = -3907.799902 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.85668 -39.46528 -37.46231 -36.07061 -34.20473 -33.37148 -31.65440 -30.69770 -30.24120 -29.72381 -29.53558 -27.29659 -24.66702 -23.94390 -23.11529 -22.98789 -22.10481 -21.02163 -20.25535 -19.55130 -18.38369 -17.09980 -16.64031 -16.40680 -16.21008 -15.47100 -14.76157 -14.64344 -14.47255 -14.11816 -13.87658 -13.78964 -13.50004 -13.41511 -13.24574 -13.10006 -12.93325 -12.72713 -12.52499 -12.34371 -12.12685 -11.80381 -11.63989 -11.46193 -11.30731 -11.11671 -10.99296 -10.91212 -10.80183 -10.63844 -10.53407 -10.31314 -10.06648 -9.85229 -9.64604 -9.44328 -9.38295 -9.13668 -8.92611 -8.46394 -8.34753 -8.25437 -6.51350 -5.68566 -3.09963 1.33074 1.50274 3.14356 3.40519 3.48261 3.50621 3.74488 4.06614 4.36745 4.56658 4.58943 4.81118 4.87821 4.90619 5.11538 5.23338 5.33880 5.36925 5.41651 5.45743 5.49100 5.51319 5.61900 5.69483 5.75662 5.76461 5.78617 5.85703 5.89796 5.96960 6.10016 6.13038 6.18793 6.27076 6.34434 6.39009 6.41304 6.43663 6.55649 6.63473 6.66421 6.80878 6.91619 6.96332 7.01474 7.13739 7.34322 7.59379 7.85840 7.91903 8.25586 8.27078 8.55363 8.88145 9.32538 9.97290 10.55156 11.38280 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011096 B = 0.004928 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.743713 B = 5680.369020 C = 7233.364657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 N -0.690 5.690 4 C 0.529 3.471 5 O -0.548 6.548 6 C -0.055 4.055 7 H 0.105 0.895 8 C -0.099 4.099 9 C -0.119 4.119 10 C -0.076 4.076 11 C -0.128 4.128 12 C -0.080 4.080 13 C -0.169 4.169 14 C 0.133 3.867 15 N -0.472 5.472 16 C 0.134 3.866 17 C -0.151 4.151 18 C 0.180 3.820 19 N -0.587 5.587 20 C -0.248 4.248 21 H 0.061 0.939 22 C 0.003 3.997 23 N -0.898 5.898 24 Si 0.896 3.104 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.146 3.854 29 C -0.136 4.136 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.406 0.594 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.158 0.842 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.027 0.973 47 H 0.250 0.750 48 H 0.049 0.951 49 H 0.024 0.976 50 H 0.070 0.930 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.618 15.713 -2.760 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.098 3.902 3 N -0.341 5.341 4 C 0.314 3.686 5 O -0.427 6.427 6 C -0.077 4.077 7 H 0.122 0.878 8 C -0.137 4.137 9 C -0.156 4.156 10 C -0.113 4.113 11 C -0.129 4.129 12 C -0.106 4.106 13 C -0.189 4.189 14 C -0.026 4.026 15 N -0.180 5.180 16 C -0.002 4.002 17 C -0.190 4.190 18 C 0.054 3.946 19 N -0.310 5.310 20 C -0.378 4.378 21 H 0.079 0.921 22 C -0.195 4.195 23 N -0.543 5.543 24 Si 0.726 3.274 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.019 3.981 29 C -0.176 4.176 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.244 0.756 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.176 0.824 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.045 0.955 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.042 0.958 50 H 0.088 0.912 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.492 14.837 -2.502 16.387 hybrid contribution 1.606 -0.342 0.366 1.682 sum -4.886 14.494 -2.137 15.444 Atomic orbital electron populations 1.22230 0.95866 1.01582 1.02125 1.20211 0.92201 0.80945 0.96882 1.46102 1.51756 1.11251 1.25017 1.19943 0.79960 0.86623 0.82100 1.90597 1.39207 1.76925 1.35995 1.20168 0.90539 0.95575 1.01424 0.87756 1.21379 1.00047 0.95030 0.97228 1.21583 0.94855 0.97233 1.01972 1.20406 0.95768 0.96874 0.98279 1.20274 0.93996 0.99287 0.99389 1.21479 0.93880 0.97927 0.97320 1.22101 1.01470 0.97052 0.98239 1.22646 0.88470 0.95369 0.96164 1.67345 1.12514 1.18552 1.19583 1.20479 0.94431 0.91866 0.93392 1.22557 1.01119 0.98649 0.96722 1.20665 0.87023 0.97409 0.89489 1.43971 1.48176 1.39380 0.99433 1.19136 1.09443 1.02799 1.06418 0.92112 1.24978 0.97320 0.97108 1.00098 1.70054 1.37349 1.28833 1.18017 0.86405 0.79659 0.84338 0.76991 1.21613 1.21777 1.20649 1.20857 0.90297 0.96680 0.90229 1.22310 0.99952 1.00128 0.95204 0.93685 0.92573 0.90861 0.75568 0.90586 0.90260 0.91621 0.90973 0.90852 0.90471 0.85375 0.85036 0.82436 0.91398 0.92807 0.90599 0.95494 0.94016 0.93267 0.95803 0.91165 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.40 37.16 0.31 -2.28 16 2 C 0.18 3.32 0.66 -131.78 -0.09 3.23 16 3 N -0.69 -11.82 3.49 -47.57 -0.17 -11.99 16 4 C 0.53 9.13 6.46 -10.99 -0.07 9.06 16 5 O -0.55 -10.85 12.04 5.56 0.07 -10.79 16 6 C -0.06 -0.77 2.70 -93.06 -0.25 -1.02 16 7 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 8 C -0.10 -1.20 4.66 -26.71 -0.12 -1.32 16 9 C -0.12 -1.11 5.99 -26.68 -0.16 -1.26 16 10 C -0.08 -0.77 5.69 -28.10 -0.16 -0.93 16 11 C -0.13 -1.69 5.74 -104.60 -0.60 -2.29 16 12 C -0.08 -1.02 9.75 -39.17 -0.38 -1.40 16 13 C -0.17 -2.37 10.12 -39.52 -0.40 -2.77 16 14 C 0.13 2.17 11.19 -17.69 -0.20 1.97 16 15 N -0.47 -7.85 7.38 -9.51 -0.07 -7.92 16 16 C 0.13 2.02 6.20 -82.44 -0.51 1.51 16 17 C -0.15 -3.26 4.66 -26.63 -0.12 -3.39 16 18 C 0.18 4.49 5.05 -3.73 -0.02 4.47 16 19 N -0.59 -14.54 2.99 -172.34 -0.52 -15.05 16 20 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 21 H 0.06 1.64 7.89 -52.48 -0.41 1.23 16 22 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 23 N -0.90 -26.05 11.20 55.49 0.62 -25.43 16 24 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 C 0.15 3.00 6.24 -3.71 -0.02 2.98 16 29 C -0.14 -2.40 4.96 -26.61 -0.13 -2.53 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.30 6.17 -51.93 -0.32 0.98 16 33 H 0.41 6.74 5.69 -40.82 -0.23 6.51 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.14 7.76 -51.93 -0.40 0.73 16 36 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.16 2.64 8.06 -52.48 -0.42 2.22 16 43 H 0.07 1.55 6.20 -51.93 -0.32 1.22 16 44 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.08 2.19 6.06 -51.93 -0.31 1.87 16 46 H 0.03 0.71 7.50 -51.93 -0.39 0.32 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.05 1.00 7.93 -51.93 -0.41 0.58 16 49 H 0.02 0.49 6.94 -51.93 -0.36 0.13 16 50 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 51 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -31.31 385.10 -10.67 -41.98 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -8.22 Total: 9.37 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -3.16 Total: -2.88 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.13 Total: -60.39 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.31 -10.67 -41.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045533187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.608 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds