Wall clock time and date at job start Wed Apr 1 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.44858 * 2 1 4 4 C 1.34783 * 120.00235 * 60.03101 * 3 2 1 5 5 O 1.21282 * 119.99725 * 359.97438 * 4 3 2 6 6 C 1.50691 * 120.00126 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.25582 * 299.47596 * 6 4 3 8 8 C 1.52730 * 109.25564 * 179.97438 * 6 4 3 9 9 C 1.53326 * 108.42460 * 188.44519 * 8 6 4 10 10 C 1.52767 * 108.35371 * 69.89966 * 9 8 6 11 11 C 1.50498 * 110.55558 * 309.19773 * 10 9 8 12 12 C 1.39192 * 117.97012 * 197.28764 * 11 10 9 13 13 C 1.38402 * 118.86533 * 180.20455 * 12 11 10 14 14 C 1.38242 * 118.84825 * 0.03300 * 13 12 11 15 15 N 1.31511 * 120.60744 * 359.90486 * 14 13 12 16 16 C 1.32708 * 122.39854 * 359.96800 * 15 14 13 17 17 C 1.53038 * 109.46455 * 240.03018 * 2 1 3 18 18 C 1.53194 * 109.31420 * 178.61428 * 17 2 1 19 19 N 1.46930 * 108.77517 * 54.63377 * 18 17 2 20 20 C 1.36939 * 120.62571 * 126.41228 * 19 18 17 21 21 H 1.07997 * 120.00039 * 332.60834 * 20 19 18 22 22 C 1.38812 * 119.99576 * 152.61328 * 20 19 18 23 23 N 1.31618 * 119.99612 * 159.34505 * 22 20 19 24 24 Si 1.86801 * 120.00048 * 339.34275 * 22 20 19 25 25 H 1.48498 * 109.47313 * 92.94451 * 24 22 20 26 26 H 1.48506 * 109.47015 * 212.94727 * 24 22 20 27 27 H 1.48499 * 109.47228 * 332.94195 * 24 22 20 28 28 C 1.46919 * 118.73886 * 306.39699 * 19 18 17 29 29 C 1.53046 * 109.45622 * 119.96111 * 2 1 3 30 30 H 1.09000 * 109.47045 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47441 * 299.97010 * 1 2 3 32 32 H 1.09002 * 109.46715 * 59.96956 * 1 2 3 33 33 H 0.97000 * 119.99966 * 240.02742 * 3 2 1 34 34 H 1.08996 * 109.67725 * 308.17822 * 8 6 4 35 35 H 1.08997 * 109.66714 * 68.71568 * 8 6 4 36 36 H 1.09001 * 109.68954 * 189.61550 * 9 8 6 37 37 H 1.09004 * 109.69095 * 310.18047 * 9 8 6 38 38 H 1.09005 * 109.26018 * 69.47239 * 10 9 8 39 39 H 1.08993 * 109.26552 * 188.95553 * 10 9 8 40 40 H 1.07997 * 120.56660 * 0.19155 * 12 11 10 41 41 H 1.08007 * 120.57712 * 180.02562 * 13 12 11 42 42 H 1.08002 * 119.69532 * 179.89284 * 14 13 12 43 43 H 1.08994 * 109.49956 * 298.57062 * 17 2 1 44 44 H 1.09004 * 109.49592 * 58.66608 * 17 2 1 45 45 H 1.09000 * 109.58555 * 174.42689 * 18 17 2 46 46 H 1.09001 * 109.58462 * 294.85117 * 18 17 2 47 47 H 0.97005 * 119.99758 * 180.02562 * 23 22 20 48 48 H 1.09006 * 109.58828 * 293.81353 * 28 19 18 49 49 H 1.09008 * 109.70603 * 173.46451 * 28 19 18 50 50 H 1.09001 * 109.49921 * 301.33779 * 29 2 1 51 51 H 1.08996 * 109.49605 * 61.43761 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0178 1.3814 0.0000 4 6 1.6924 2.2111 1.0112 5 8 0.9954 1.8141 1.9208 6 6 2.1946 3.6318 1.0114 7 1 3.2846 3.6278 1.0206 8 6 1.6826 4.3468 2.2601 9 6 2.0222 5.8370 2.1388 10 6 1.1480 6.4419 1.0417 11 6 1.2357 5.6209 -0.2166 12 6 0.8127 6.2043 -1.4075 13 6 0.8813 5.4645 -2.5752 14 6 1.3670 4.1714 -2.5180 15 7 1.7590 3.6534 -1.3746 16 6 1.7117 4.3300 -0.2340 17 6 2.0400 -0.7208 -1.2500 18 6 3.5715 -0.6886 -1.2641 19 7 4.0680 -1.2487 0.0003 20 6 4.9765 -2.2733 0.0003 21 1 5.0130 -2.9627 -0.8302 22 6 5.8506 -2.4257 1.0679 23 7 6.4272 -3.5887 1.2853 24 14 6.2084 -0.9802 2.1957 25 1 5.2798 -1.0144 3.3540 26 1 7.6091 -1.0663 2.6815 27 1 6.0210 0.2892 1.4483 28 6 3.5713 -0.6885 1.2644 29 6 2.0398 -0.7207 1.2502 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 2.5750 1.6990 -0.7277 34 1 0.6026 4.2217 2.3377 35 1 2.1652 3.9313 3.1447 36 1 1.8216 6.3377 3.0860 37 1 3.0738 5.9539 1.8767 38 1 0.1125 6.4696 1.3813 39 1 1.4848 7.4571 0.8322 40 1 0.4372 7.2168 -1.4201 41 1 0.5609 5.8899 -3.5148 42 1 1.4249 3.5812 -3.4207 43 1 1.6979 -1.7556 -1.2382 44 1 1.6574 -0.2208 -2.1398 45 1 3.9418 -1.2845 -2.0982 46 1 3.9144 0.3410 -1.3672 47 1 7.0377 -3.6953 2.0316 48 1 3.9142 0.3411 1.3676 49 1 3.9416 -1.2823 2.1002 50 1 1.6571 -0.2206 2.1399 51 1 1.6978 -1.7555 1.2385 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045533189.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:03 Heat of formation + Delta-G solvation = 17.683988 kcal Electronic energy + Delta-G solvation = -32148.901146 eV Core-core repulsion = 28241.277253 eV Total energy + Delta-G solvation = -3907.623893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.22841 -39.81230 -37.76365 -36.41846 -34.43449 -33.74825 -31.84541 -31.06373 -30.64111 -30.33387 -29.84598 -27.61230 -24.97317 -23.88205 -23.50277 -23.35271 -22.70471 -21.32037 -20.52098 -19.81567 -18.67971 -17.38779 -16.87030 -16.66890 -16.62117 -15.84951 -15.19336 -15.02252 -14.69732 -14.43240 -14.12647 -14.05908 -13.86993 -13.71712 -13.56271 -13.39226 -13.20237 -13.03443 -12.81359 -12.64012 -12.28912 -12.11252 -11.96940 -11.79694 -11.65605 -11.35773 -11.26286 -11.15615 -11.09665 -10.81281 -10.72450 -10.44864 -10.16594 -10.00637 -9.88225 -9.67075 -9.60462 -9.40420 -9.23666 -8.85857 -8.64447 -8.39463 -6.88482 -5.89362 -3.23866 0.82810 0.99145 2.93067 3.39527 3.41432 3.52604 3.56217 3.66337 3.95492 4.27226 4.45670 4.54332 4.59475 4.66694 4.69571 4.85513 4.94962 5.04961 5.11674 5.16179 5.22824 5.31495 5.34917 5.36276 5.46874 5.48997 5.52351 5.56556 5.62709 5.71976 5.86872 5.90025 5.94510 6.01086 6.03640 6.10802 6.14478 6.16573 6.24619 6.30601 6.42129 6.42927 6.61545 6.66202 6.71022 6.75427 6.82417 6.98860 7.15926 7.73089 8.02737 8.06591 8.38608 8.67199 9.01278 9.79112 10.18236 11.26837 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.003830 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.416953 B = 7308.680951 C = 7905.548764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.183 3.817 3 N -0.693 5.693 4 C 0.528 3.472 5 O -0.545 6.545 6 C -0.062 4.062 7 H 0.112 0.888 8 C -0.099 4.099 9 C -0.122 4.122 10 C -0.077 4.077 11 C -0.120 4.120 12 C -0.077 4.077 13 C -0.175 4.175 14 C 0.108 3.892 15 N -0.481 5.481 16 C 0.143 3.857 17 C -0.136 4.136 18 C 0.150 3.850 19 N -0.605 5.605 20 C -0.257 4.257 21 H 0.085 0.915 22 C 0.024 3.976 23 N -0.910 5.910 24 Si 0.883 3.117 25 H -0.289 1.289 26 H -0.305 1.305 27 H -0.272 1.272 28 C 0.134 3.866 29 C -0.144 4.144 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.408 0.592 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.158 0.842 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.019 0.981 47 H 0.261 0.739 48 H 0.021 0.979 49 H 0.068 0.932 50 H 0.075 0.925 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.195 22.671 -5.530 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.097 3.903 3 N -0.345 5.345 4 C 0.313 3.687 5 O -0.424 6.424 6 C -0.084 4.084 7 H 0.130 0.870 8 C -0.137 4.137 9 C -0.160 4.160 10 C -0.115 4.115 11 C -0.122 4.122 12 C -0.103 4.103 13 C -0.195 4.195 14 C -0.052 4.052 15 N -0.190 5.190 16 C 0.007 3.993 17 C -0.175 4.175 18 C 0.024 3.976 19 N -0.329 5.329 20 C -0.386 4.386 21 H 0.102 0.898 22 C -0.175 4.175 23 N -0.553 5.553 24 Si 0.714 3.286 25 H -0.217 1.217 26 H -0.233 1.233 27 H -0.198 1.198 28 C 0.008 3.992 29 C -0.184 4.184 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.247 0.753 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.175 0.825 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.037 0.963 47 H 0.071 0.929 48 H 0.038 0.962 49 H 0.086 0.914 50 H 0.094 0.906 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.223 21.395 -4.818 25.609 hybrid contribution 0.264 1.772 0.085 1.794 sum -12.959 23.167 -4.733 26.964 Atomic orbital electron populations 1.22174 0.95331 1.01698 1.02288 1.20224 0.92850 0.80660 0.96519 1.46193 1.52509 1.11132 1.24698 1.19925 0.80351 0.86323 0.82134 1.90611 1.38598 1.76855 1.36322 1.20273 1.02437 0.93105 0.92555 0.87030 1.21395 1.02771 0.93767 0.95771 1.21618 0.99988 0.95759 0.98590 1.20454 1.01184 0.97965 0.91898 1.20416 1.00242 0.95128 0.96413 1.21575 0.96810 1.00069 0.91890 1.22117 1.01894 0.96226 0.99234 1.22676 0.93837 0.93032 0.95630 1.67373 1.15685 1.37485 0.98462 1.20591 0.95493 0.90449 0.92722 1.22287 0.99118 1.00634 0.95470 1.20878 0.90791 0.96302 0.89673 1.44354 1.48794 1.40321 0.99415 1.18928 1.09563 1.02671 1.07401 0.89753 1.25251 0.97458 0.96613 0.98187 1.69841 1.32803 1.22005 1.30687 0.86944 0.76022 0.84913 0.80756 1.21666 1.23330 1.19757 1.21215 0.91786 0.96389 0.89778 1.22408 0.98311 1.00109 0.97537 0.92346 0.90925 0.93502 0.75318 0.90335 0.90042 0.90594 0.91351 0.90206 0.90505 0.84914 0.84763 0.82494 0.90518 0.92219 0.91802 0.96280 0.92870 0.96157 0.91357 0.90636 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.40 37.16 0.31 -2.14 16 2 C 0.18 3.13 0.66 -131.78 -0.09 3.04 16 3 N -0.69 -11.23 3.50 -47.57 -0.17 -11.40 16 4 C 0.53 8.57 6.48 -10.99 -0.07 8.50 16 5 O -0.55 -10.12 12.05 5.56 0.07 -10.05 16 6 C -0.06 -0.80 2.71 -93.05 -0.25 -1.05 16 7 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 8 C -0.10 -1.09 4.65 -26.70 -0.12 -1.21 16 9 C -0.12 -0.98 5.98 -26.68 -0.16 -1.14 16 10 C -0.08 -0.57 5.68 -28.10 -0.16 -0.73 16 11 C -0.12 -1.16 5.74 -104.60 -0.60 -1.76 16 12 C -0.08 -0.62 9.75 -39.17 -0.38 -1.00 16 13 C -0.17 -1.37 10.12 -39.52 -0.40 -1.77 16 14 C 0.11 1.03 11.19 -17.69 -0.20 0.83 16 15 N -0.48 -5.85 7.54 -9.51 -0.07 -5.92 16 16 C 0.14 1.70 6.19 -82.44 -0.51 1.19 16 17 C -0.14 -2.25 4.96 -26.61 -0.13 -2.38 16 18 C 0.15 2.94 6.24 -3.71 -0.02 2.92 16 19 N -0.60 -14.64 2.77 -172.31 -0.48 -15.11 16 20 C -0.26 -7.31 10.04 -15.06 -0.15 -7.47 16 21 H 0.08 2.54 8.06 -52.49 -0.42 2.11 16 22 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 23 N -0.91 -28.47 13.97 55.49 0.78 -27.69 16 24 Si 0.88 23.29 24.35 -169.99 -4.14 19.15 16 25 H -0.29 -7.52 6.62 56.52 0.37 -7.14 16 26 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 27 H -0.27 -7.05 6.63 56.52 0.37 -6.68 16 28 C 0.13 3.11 3.94 -3.71 -0.01 3.10 16 29 C -0.14 -2.89 4.67 -26.61 -0.12 -3.01 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.25 6.17 -51.93 -0.32 0.92 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.41 6.38 5.59 -40.82 -0.23 6.15 16 34 H 0.08 0.94 7.78 -51.93 -0.40 0.54 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.44 8.13 -51.93 -0.42 0.02 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 42 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 46 H 0.02 0.37 6.94 -51.93 -0.36 0.00 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 48 H 0.02 0.48 6.67 -51.93 -0.35 0.14 16 49 H 0.07 1.77 4.50 -51.92 -0.23 1.53 16 50 H 0.08 1.55 6.20 -51.93 -0.32 1.23 16 51 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -33.71 379.00 -9.62 -43.33 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.15 Total: 5.46 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -3.17 Total: -3.47 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.06 Total: -60.13 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.14 Total: 19.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.71 -9.62 -43.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045533189.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.013 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds