Wall clock time and date at job start Wed Apr 1 2020 02:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47897 * 110.99762 * 2 1 4 4 C 1.54576 * 102.65043 * 94.60897 * 3 2 1 5 5 C 1.51629 * 102.83592 * 25.65897 * 4 3 2 6 6 C 1.38087 * 131.37887 * 163.68119 * 5 4 3 7 7 C 1.37999 * 120.27626 * 180.32689 * 6 5 4 8 8 C 1.39604 * 119.74834 * 0.02562 * 7 6 5 9 9 C 1.47857 * 120.02977 * 179.88847 * 8 7 6 10 10 O 1.21558 * 119.99988 * 180.02562 * 9 8 7 11 11 N 1.34773 * 119.99980 * 0.02562 * 9 8 7 12 12 C 1.46503 * 119.99899 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46002 * 60.00294 * 12 11 9 14 14 C 1.53045 * 109.46224 * 300.02651 * 12 11 9 15 15 C 1.53172 * 109.32684 * 301.36222 * 14 12 11 16 16 N 1.46927 * 108.76713 * 305.35251 * 15 14 12 17 17 C 1.36934 * 120.63124 * 233.63601 * 16 15 14 18 18 H 1.07994 * 120.00056 * 152.60569 * 17 16 15 19 19 C 1.38812 * 119.99835 * 332.59598 * 17 16 15 20 20 N 1.31622 * 120.00042 * 159.36589 * 19 17 16 21 21 Si 1.86799 * 120.00148 * 339.36853 * 19 17 16 22 22 H 1.48498 * 109.47568 * 92.89766 * 21 19 17 23 23 H 1.48498 * 109.47350 * 212.89791 * 21 19 17 24 24 H 1.48505 * 109.46865 * 332.89539 * 21 19 17 25 25 C 1.46931 * 118.73778 * 53.60892 * 16 15 14 26 26 C 1.53040 * 109.45683 * 179.97438 * 12 11 9 27 27 C 1.39280 * 119.94450 * 359.67673 * 8 7 6 28 28 C 1.39083 * 107.90366 * 343.79093 * 5 4 3 29 29 H 1.08998 * 109.47225 * 299.99523 * 1 2 3 30 30 H 1.09003 * 109.47467 * 59.99543 * 1 2 3 31 31 H 1.09006 * 109.46989 * 179.97438 * 1 2 3 32 32 H 1.09008 * 110.77269 * 212.90023 * 3 2 1 33 33 H 1.08997 * 110.77342 * 336.31636 * 3 2 1 34 34 H 1.09000 * 110.74055 * 143.99603 * 4 3 2 35 35 H 1.09002 * 110.74125 * 267.32474 * 4 3 2 36 36 H 1.08001 * 119.85864 * 0.30505 * 6 5 4 37 37 H 1.08005 * 120.12471 * 179.97438 * 7 6 5 38 38 H 0.97002 * 119.99986 * 359.97438 * 11 9 8 39 39 H 1.08994 * 109.47488 * 59.99934 * 13 12 11 40 40 H 1.09010 * 109.46804 * 180.02562 * 13 12 11 41 41 H 1.08999 * 109.46752 * 299.99584 * 13 12 11 42 42 H 1.09001 * 109.49431 * 61.29729 * 14 12 11 43 43 H 1.08989 * 109.50068 * 181.39750 * 14 12 11 44 44 H 1.08999 * 109.58694 * 185.56715 * 15 14 12 45 45 H 1.09000 * 109.70924 * 65.20787 * 15 14 12 46 46 H 0.96996 * 119.99846 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.58432 * 186.60387 * 25 16 15 48 48 H 1.09004 * 109.70131 * 66.25259 * 25 16 15 49 49 H 1.09010 * 109.49662 * 178.60850 * 26 12 11 50 50 H 1.09001 * 109.49951 * 298.66864 * 26 12 11 51 51 H 1.07994 * 119.95888 * 180.29286 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9989 1.3808 0.0000 4 6 2.2333 1.6534 1.5034 5 6 2.4361 0.2618 2.0704 6 6 2.9688 -0.1662 3.2704 7 6 3.0508 -1.5143 3.5538 8 6 2.5931 -2.4472 2.6216 9 6 2.6802 -3.8932 2.9178 10 8 2.2819 -4.7050 2.1054 11 7 3.2012 -4.3110 4.0884 12 6 3.2870 -5.7438 4.3821 13 6 4.1550 -6.4296 3.3252 14 6 1.8832 -6.3532 4.3628 15 6 1.0071 -5.6409 5.3979 16 7 1.6742 -5.7041 6.7055 17 6 1.0174 -6.1983 7.8007 18 1 1.5758 -6.6522 8.6059 19 6 -0.3662 -6.1155 7.8759 20 7 -1.0304 -6.9152 8.6833 21 14 -1.2856 -4.8692 6.8314 22 1 -1.7029 -5.5043 5.5556 23 1 -2.4872 -4.3981 7.5659 24 1 -0.3977 -3.7145 6.5425 25 6 3.0597 -5.2274 6.8155 26 6 3.9127 -5.9442 5.7642 27 6 2.0502 -2.0146 1.4141 28 6 1.9712 -0.6540 1.1326 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.9364 1.4351 -0.5536 33 1 1.2661 2.0761 -0.4094 34 1 3.1243 2.2638 1.6506 35 1 1.3602 2.1288 1.9502 36 1 3.3231 0.5572 3.9899 37 1 3.4683 -1.8463 4.4929 38 1 3.5193 -3.6632 4.7364 39 1 5.1546 -5.9955 3.3384 40 1 4.2185 -7.4958 3.5434 41 1 3.7096 -6.2865 2.3407 42 1 1.4470 -6.2307 3.3715 43 1 1.9437 -7.4140 4.6057 44 1 0.0375 -6.1352 5.4580 45 1 0.8689 -4.5993 5.1081 46 1 -1.9972 -6.8576 8.7356 47 1 3.4442 -5.4488 7.8110 48 1 3.0931 -4.1518 6.6417 49 1 3.9542 -7.0091 5.9938 50 1 4.9215 -5.5313 5.7703 51 1 1.6917 -2.7359 0.6948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045633343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:54 Heat of formation + Delta-G solvation = 38.468240 kcal Electronic energy + Delta-G solvation = -31242.086655 eV Core-core repulsion = 27335.364034 eV Total energy + Delta-G solvation = -3906.722620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.15920 -40.17992 -37.85371 -36.57683 -34.61427 -32.73207 -32.14182 -31.22905 -30.44256 -30.08802 -29.16170 -27.70115 -26.19477 -24.23780 -23.74225 -22.81441 -22.55440 -21.31882 -21.24890 -20.20373 -18.87143 -17.86405 -16.87930 -16.40225 -16.11868 -15.78364 -15.32890 -15.25955 -14.81494 -14.65857 -14.23616 -14.05977 -13.93423 -13.66780 -13.65919 -13.51740 -13.38777 -13.18818 -12.83340 -12.56392 -12.37832 -12.28521 -12.06684 -12.04777 -11.85411 -11.72148 -11.52394 -11.35783 -11.24545 -11.23358 -10.81061 -10.54578 -10.24419 -9.99844 -9.76430 -9.73382 -9.49272 -9.28868 -9.05172 -8.81744 -8.54332 -8.22722 -6.95888 -5.94440 -3.29860 0.68044 1.12913 2.82683 3.13621 3.35831 3.49166 3.49553 3.52214 3.74001 4.17150 4.39609 4.54516 4.58784 4.63930 4.78996 4.86377 4.98097 4.99812 5.08285 5.11598 5.16008 5.22445 5.26240 5.30455 5.33767 5.45064 5.47102 5.53139 5.56769 5.72672 5.78382 5.88096 5.99659 6.02288 6.04168 6.11393 6.12715 6.14516 6.18170 6.31775 6.34369 6.51832 6.55363 6.56242 6.59414 6.65677 6.72767 6.84976 6.92849 7.00614 7.73790 7.97337 8.33202 8.40254 8.94972 9.73305 10.11356 11.21538 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.003436 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.362652 B = 8147.378345 C = 9112.439582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.495 5.495 3 C 0.049 3.951 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.095 4.095 7 C -0.095 4.095 8 C -0.113 4.113 9 C 0.560 3.440 10 O -0.533 6.533 11 N -0.708 5.708 12 C 0.184 3.816 13 C -0.160 4.160 14 C -0.144 4.144 15 C 0.132 3.868 16 N -0.605 5.605 17 C -0.260 4.260 18 H 0.086 0.914 19 C 0.025 3.975 20 N -0.908 5.908 21 Si 0.882 3.118 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.272 1.272 25 C 0.149 3.851 26 C -0.139 4.139 27 C -0.051 4.051 28 C 0.077 3.923 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.397 0.603 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.022 0.978 46 H 0.262 0.738 47 H 0.066 0.934 48 H 0.017 0.983 49 H 0.081 0.919 50 H 0.060 0.940 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.277 16.571 -15.389 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.213 5.213 3 C -0.078 4.078 4 C -0.150 4.150 5 C -0.123 4.123 6 C -0.114 4.114 7 C -0.114 4.114 8 C -0.116 4.116 9 C 0.347 3.653 10 O -0.411 6.411 11 N -0.359 5.359 12 C 0.099 3.901 13 C -0.218 4.218 14 C -0.184 4.184 15 C 0.007 3.993 16 N -0.328 5.328 17 C -0.388 4.388 18 H 0.103 0.897 19 C -0.174 4.174 20 N -0.551 5.551 21 Si 0.713 3.287 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.198 1.198 25 C 0.023 3.977 26 C -0.178 4.178 27 C -0.072 4.072 28 C -0.019 4.019 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.233 0.767 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.040 0.960 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.034 0.966 49 H 0.099 0.901 50 H 0.079 0.921 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.944 15.663 -16.363 24.738 hybrid contribution -0.768 1.430 0.539 1.710 sum 9.176 17.093 -15.824 25.035 Atomic orbital electron populations 1.22521 0.85197 1.03268 1.01159 1.60182 1.08746 1.14678 1.37671 1.23188 1.01457 0.87859 0.95261 1.21737 1.03089 0.94112 0.96098 1.21177 1.01015 0.95656 0.94423 1.20315 0.99833 0.95482 0.95774 1.21248 0.98873 0.92608 0.98675 1.19801 1.02822 0.93492 0.95524 1.18084 0.77673 0.87565 0.81994 1.90703 1.47994 1.54877 1.47533 1.46072 1.62767 1.08727 1.18349 1.20301 0.96295 0.78892 0.94634 1.22215 0.98789 1.00248 1.00575 1.22406 0.94809 1.00448 1.00710 1.21240 0.95889 0.97032 0.85186 1.44353 1.10521 1.73104 1.04860 1.18908 0.89985 1.31730 0.98152 0.89689 1.25254 0.96469 0.98420 0.97262 1.69835 1.07380 1.37245 1.40669 0.86965 0.79042 0.83667 0.79049 1.21666 1.23250 1.19752 1.20879 0.85389 0.94477 0.96991 1.22343 0.98219 1.03068 0.94185 1.20512 0.97366 0.93205 0.96095 1.19406 0.99554 0.93166 0.89780 0.94721 0.90575 0.90631 0.89133 0.89565 0.89271 0.89843 0.85447 0.85138 0.76688 0.93195 0.91926 0.90654 0.90556 0.91037 0.91242 0.96027 0.92794 0.91586 0.96554 0.90085 0.92104 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.29 60.06 0.56 0.77 16 2 N -0.50 -5.08 5.33 -176.89 -0.94 -6.03 16 3 C 0.05 0.36 7.00 -2.45 -0.02 0.34 16 4 C -0.11 -0.84 6.97 -26.60 -0.19 -1.02 16 5 C -0.12 -1.26 6.23 -103.91 -0.65 -1.91 16 6 C -0.10 -0.98 10.01 -39.72 -0.40 -1.38 16 7 C -0.09 -1.10 9.54 -39.16 -0.37 -1.47 16 8 C -0.11 -1.57 5.86 -105.06 -0.62 -2.18 16 9 C 0.56 8.95 7.19 -12.33 -0.09 8.86 16 10 O -0.53 -9.88 12.54 5.31 0.07 -9.82 16 11 N -0.71 -10.52 4.05 -48.49 -0.20 -10.71 16 12 C 0.18 2.92 0.66 -131.78 -0.09 2.84 16 13 C -0.16 -2.30 8.40 37.16 0.31 -1.98 16 14 C -0.14 -2.78 4.67 -26.62 -0.12 -2.91 16 15 C 0.13 3.00 3.95 -3.72 -0.01 2.98 16 16 N -0.60 -14.16 2.77 -172.33 -0.48 -14.64 16 17 C -0.26 -7.22 10.03 -15.06 -0.15 -7.37 16 18 H 0.09 2.50 8.05 -52.49 -0.42 2.08 16 19 C 0.02 0.73 5.23 -17.43 -0.09 0.63 16 20 N -0.91 -28.08 13.97 55.49 0.78 -27.30 16 21 Si 0.88 23.09 24.34 -169.99 -4.14 18.95 16 22 H -0.29 -7.50 6.62 56.52 0.37 -7.12 16 23 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 24 H -0.27 -7.00 6.64 56.52 0.38 -6.63 16 25 C 0.15 2.74 6.24 -3.71 -0.02 2.72 16 26 C -0.14 -2.11 4.96 -26.61 -0.13 -2.24 16 27 C -0.05 -0.70 9.62 -38.85 -0.37 -1.07 16 28 C 0.08 0.92 5.58 -83.42 -0.47 0.45 16 29 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.51 8.11 -51.93 -0.42 0.09 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.09 0.46 7.76 -51.93 -0.40 0.06 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.13 1.27 6.40 -52.48 -0.34 0.94 16 38 H 0.40 5.11 5.29 -40.82 -0.22 4.89 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.07 1.20 6.16 -51.93 -0.32 0.88 16 42 H 0.08 1.53 6.20 -51.93 -0.32 1.21 16 43 H 0.07 1.40 8.14 -51.94 -0.42 0.98 16 44 H 0.07 1.77 4.50 -51.93 -0.23 1.54 16 45 H 0.02 0.50 6.67 -51.93 -0.35 0.16 16 46 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 48 H 0.02 0.28 6.94 -51.93 -0.36 -0.08 16 49 H 0.08 1.30 8.14 -51.92 -0.42 0.87 16 50 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.14 1.97 7.63 -52.49 -0.40 1.57 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -33.50 384.23 -10.07 -43.57 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.03 Total: 4.13 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.92 Total: -3.95 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.84 Total: -58.68 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.82 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.14 Total: 18.95 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.50 -10.07 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045633343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.037 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds