Wall clock time and date at job start Wed Apr 1 2020 03:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38356 * 119.45948 * 2 1 4 4 C 1.38361 * 119.30239 * 179.72092 * 3 2 1 5 5 C 1.50697 * 120.85508 * 180.30128 * 4 3 2 6 6 C 1.40023 * 118.28639 * 0.57015 * 4 3 2 7 7 C 1.47835 * 120.55539 * 179.73399 * 6 4 3 8 8 O 1.21556 * 120.00235 * 269.71780 * 7 6 4 9 9 N 1.34774 * 120.00203 * 89.72249 * 7 6 4 10 10 C 1.44786 * 120.18120 * 0.02562 * 9 7 6 11 11 C 1.51518 * 112.21883 * 264.53592 * 10 9 7 12 12 C 1.51315 * 113.25045 * 285.36175 * 11 10 9 13 13 H 1.08997 * 111.31791 * 185.24009 * 12 11 10 14 14 C 1.54720 * 107.22324 * 307.28013 * 12 11 10 15 15 C 1.54624 * 104.28709 * 89.34837 * 14 12 11 16 16 C 1.50868 * 105.21351 * 11.53873 * 15 14 12 17 17 H 1.08996 * 105.90431 * 122.36682 * 16 15 14 18 18 C 1.49819 * 120.18211 * 179.97438 * 9 7 6 19 19 N 1.48059 * 109.91192 * 8.03474 * 16 15 14 20 20 C 1.36934 * 127.84345 * 155.16352 * 19 16 15 21 21 H 1.08004 * 119.99418 * 24.90626 * 20 19 16 22 22 C 1.38811 * 120.00269 * 204.91404 * 20 19 16 23 23 N 1.31616 * 119.99967 * 27.05193 * 22 20 19 24 24 Si 1.86798 * 119.99971 * 207.05349 * 22 20 19 25 25 H 1.48501 * 109.47182 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47064 * 119.99942 * 24 22 20 27 27 H 1.48499 * 109.47067 * 240.00056 * 24 22 20 28 28 C 1.39524 * 118.88092 * 359.45778 * 6 4 3 29 29 C 1.50704 * 119.71488 * 180.27504 * 28 6 4 30 30 N 1.31686 * 120.56734 * 0.25371 * 28 6 4 31 31 H 1.08999 * 109.47268 * 269.97179 * 1 2 3 32 32 H 1.09003 * 109.47720 * 29.97283 * 1 2 3 33 33 H 1.09002 * 109.47324 * 149.96850 * 1 2 3 34 34 H 1.08000 * 120.34824 * 0.03710 * 3 2 1 35 35 H 1.08998 * 109.47332 * 270.27441 * 5 4 3 36 36 H 1.09000 * 109.47475 * 30.27492 * 5 4 3 37 37 H 1.09002 * 109.47143 * 150.27474 * 5 4 3 38 38 H 1.08999 * 108.93723 * 143.83099 * 10 9 7 39 39 H 1.09000 * 108.93018 * 25.23585 * 10 9 7 40 40 H 1.08999 * 108.72636 * 164.39463 * 11 10 9 41 41 H 1.09000 * 108.72794 * 46.33732 * 11 10 9 42 42 H 1.09001 * 110.45178 * 208.18931 * 14 12 11 43 43 H 1.08995 * 110.45398 * 330.74553 * 14 12 11 44 44 H 1.08996 * 110.16593 * 252.67715 * 15 14 12 45 45 H 1.09000 * 110.53233 * 130.58377 * 15 14 12 46 46 H 1.08999 * 109.54923 * 270.58302 * 18 9 7 47 47 H 1.09001 * 109.54384 * 30.85553 * 18 9 7 48 48 H 0.97004 * 120.00078 * 5.91463 * 23 22 20 49 49 H 1.09004 * 109.47110 * 89.99776 * 29 28 6 50 50 H 1.08996 * 109.47011 * 209.99870 * 29 28 6 51 51 H 1.09003 * 109.46790 * 330.00544 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2009 0.0059 5 6 4.3474 2.4924 0.0129 6 6 4.2312 -0.0339 -0.0006 7 6 5.7082 -0.0965 -0.0007 8 8 6.3155 -0.1217 -1.0534 9 7 6.3816 -0.1256 1.1664 10 6 5.6623 -0.0963 2.4226 11 6 5.5520 1.3054 2.9872 12 6 6.8467 1.8126 3.5841 13 1 6.7096 2.7828 4.0614 14 6 7.3315 0.7489 4.5977 15 6 8.2072 -0.2085 3.7567 16 6 8.4103 0.4961 2.4382 17 1 9.4889 0.5913 2.3133 18 6 7.8784 -0.1895 1.1710 19 7 7.8798 1.8762 2.5170 20 6 8.2522 2.9631 1.7720 21 1 8.6891 2.8235 0.7942 22 6 8.0683 4.2443 2.2735 23 7 8.0569 4.4466 3.5740 24 14 7.8368 5.6813 1.1027 25 1 7.8901 5.1919 -0.2983 26 1 6.5194 6.3183 1.3553 27 1 8.9175 6.6762 1.3205 28 6 3.4716 -1.2042 -0.0012 29 6 4.1627 -2.5434 -0.0018 30 7 2.1559 -1.1486 -0.0006 31 1 -0.3634 -0.0005 1.0276 32 1 -0.3635 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5143 34 1 1.6443 2.1382 0.0006 35 1 4.5348 2.8093 -1.0131 36 1 3.7718 3.2597 0.5307 37 1 5.2973 2.3426 0.5261 38 1 6.1826 -0.7277 3.1429 39 1 4.6598 -0.4941 2.2654 40 1 4.7840 1.3117 3.7607 41 1 5.2463 1.9813 2.1886 42 1 7.9219 1.2155 5.3863 43 1 6.4828 0.2129 5.0225 44 1 7.6889 -1.1550 3.6036 45 1 9.1663 -0.3784 4.2459 46 1 8.1990 -1.2313 1.1614 47 1 8.2679 0.3214 0.2905 48 1 8.2620 3.7175 4.1801 49 1 4.3294 -2.8668 1.0257 50 1 3.5384 -3.2742 -0.5160 51 1 5.1202 -2.4578 -0.5156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045817421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:48 Heat of formation + Delta-G solvation = 29.736012 kcal Electronic energy + Delta-G solvation = -32972.133341 eV Core-core repulsion = 29065.032063 eV Total energy + Delta-G solvation = -3907.101278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.98269 -39.66368 -38.09216 -34.64312 -34.15803 -33.70486 -32.77338 -32.22423 -29.45205 -29.23649 -28.11700 -27.44425 -26.82836 -25.92173 -23.87174 -22.94822 -21.84010 -20.99767 -20.04467 -19.38688 -18.67803 -17.54556 -17.13028 -16.76611 -16.16396 -15.15497 -14.96871 -14.79125 -14.63824 -14.40926 -14.03265 -13.79319 -13.52507 -13.37164 -13.23532 -13.11704 -12.93649 -12.75067 -12.67812 -12.39193 -12.27516 -12.16774 -12.08083 -11.80624 -11.79025 -11.53601 -11.45883 -11.36160 -11.09436 -10.75654 -10.45205 -10.22971 -10.13418 -10.06748 -9.85184 -9.61967 -9.51776 -9.38697 -9.16572 -8.72390 -8.53791 -8.16246 -6.95312 -6.14667 -3.28166 0.93587 1.24154 2.87663 3.31830 3.46727 3.47425 3.62634 3.65270 4.10721 4.47887 4.57160 4.62394 4.74511 5.02222 5.06522 5.15446 5.18996 5.30973 5.34838 5.36834 5.42336 5.44198 5.48274 5.49552 5.51371 5.53265 5.62538 5.68752 5.79131 5.80649 5.83407 5.92959 5.98914 5.99593 6.05527 6.09850 6.10896 6.20108 6.26727 6.33620 6.38441 6.46237 6.58991 6.61657 6.69250 6.75630 6.93505 7.05973 7.13988 7.76700 7.81095 7.94867 8.42399 8.48290 8.92149 9.71090 10.37198 11.14218 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.004911 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.581319 B = 5700.274154 C = 6680.983103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.139 3.861 3 C -0.183 4.183 4 C 0.008 3.992 5 C -0.136 4.136 6 C -0.172 4.172 7 C 0.570 3.430 8 O -0.543 6.543 9 N -0.577 5.577 10 C 0.112 3.888 11 C -0.155 4.155 12 C 0.144 3.856 13 H 0.092 0.908 14 C -0.132 4.132 15 C -0.116 4.116 16 C 0.127 3.873 17 H 0.045 0.955 18 C 0.119 3.881 19 N -0.575 5.575 20 C -0.316 4.316 21 H 0.060 0.940 22 C -0.021 4.021 23 N -0.911 5.911 24 Si 1.059 2.941 25 H -0.290 1.290 26 H -0.289 1.289 27 H -0.293 1.293 28 C 0.164 3.836 29 C -0.107 4.107 30 N -0.491 5.491 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.082 0.918 48 H 0.270 0.730 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.988 -10.664 -1.213 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.002 3.998 3 C -0.202 4.202 4 C 0.000 4.000 5 C -0.192 4.192 6 C -0.177 4.177 7 C 0.356 3.644 8 O -0.421 6.421 9 N -0.308 5.308 10 C -0.011 4.011 11 C -0.196 4.196 12 C 0.037 3.963 13 H 0.109 0.891 14 C -0.171 4.171 15 C -0.154 4.154 16 C 0.019 3.981 17 H 0.063 0.937 18 C -0.004 4.004 19 N -0.297 5.297 20 C -0.444 4.444 21 H 0.078 0.922 22 C -0.224 4.224 23 N -0.551 5.551 24 Si 0.889 3.111 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.220 1.220 28 C 0.026 3.974 29 C -0.165 4.165 30 N -0.202 5.202 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.156 0.844 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.101 0.899 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.099 0.901 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.356 -9.680 -1.933 15.046 hybrid contribution 0.775 -0.712 0.093 1.057 sum -10.581 -10.392 -1.840 14.944 Atomic orbital electron populations 1.20711 0.88738 1.03396 1.03098 1.21315 0.96898 0.88122 0.93478 1.21760 0.93747 0.99400 1.05340 1.20406 0.93644 0.94766 0.91231 1.21156 1.01528 0.92914 1.03614 1.20685 0.94906 0.94467 1.07653 1.17972 0.86091 0.76336 0.84014 1.90761 1.69292 1.50874 1.31164 1.48110 1.07186 1.70532 1.04939 1.21024 0.95695 0.98441 0.85984 1.22099 1.00003 0.96528 1.00927 1.21257 0.87862 0.97563 0.89647 0.89065 1.22759 0.98572 0.97322 0.98415 1.21821 0.99771 0.97876 0.95982 1.20851 0.97426 0.88129 0.91683 0.93705 1.22814 0.77465 0.98889 1.01232 1.44985 1.38359 1.03590 1.42808 1.19616 1.43008 0.84655 0.97114 0.92221 1.25661 1.00038 0.98015 0.98662 1.70721 1.47165 1.34727 1.02497 0.83605 0.76938 0.75766 0.74754 1.21640 1.21606 1.22046 1.21191 0.88908 0.94463 0.92876 1.20775 1.00138 0.92304 1.03258 1.67309 1.08783 1.29140 1.15005 0.90320 0.90668 0.90509 0.84450 0.90077 0.90511 0.88460 0.90106 0.92354 0.92841 0.91098 0.92088 0.92082 0.91919 0.91829 0.92799 0.89949 0.91887 0.90134 0.90060 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.16 36.00 0.37 -0.54 16 2 C 0.14 1.79 6.78 -82.51 -0.56 1.23 16 3 C -0.18 -2.41 9.43 -39.49 -0.37 -2.79 16 4 C 0.01 0.12 5.94 -103.91 -0.62 -0.50 16 5 C -0.14 -2.25 8.81 36.00 0.32 -1.93 16 6 C -0.17 -2.88 3.86 -104.82 -0.40 -3.28 16 7 C 0.57 10.71 4.23 -12.33 -0.05 10.65 16 8 O -0.54 -11.97 16.76 5.32 0.09 -11.88 16 9 N -0.58 -10.16 2.86 -173.94 -0.50 -10.66 16 10 C 0.11 1.77 5.01 -5.71 -0.03 1.75 16 11 C -0.16 -2.77 5.04 -28.33 -0.14 -2.91 16 12 C 0.14 2.93 3.07 -66.68 -0.21 2.72 16 13 H 0.09 2.19 5.71 -51.93 -0.30 1.89 16 14 C -0.13 -2.20 6.04 -24.97 -0.15 -2.35 16 15 C -0.12 -1.82 5.82 -26.95 -0.16 -1.97 16 16 C 0.13 2.41 2.67 -67.84 -0.18 2.23 16 17 H 0.04 0.91 8.10 -51.93 -0.42 0.49 16 18 C 0.12 2.16 6.09 -1.89 -0.01 2.15 16 19 N -0.57 -13.06 2.43 -156.14 -0.38 -13.44 16 20 C -0.32 -8.34 10.10 -15.06 -0.15 -8.49 16 21 H 0.06 1.65 7.96 -52.48 -0.42 1.24 16 22 C -0.02 -0.58 5.18 -17.43 -0.09 -0.67 16 23 N -0.91 -25.85 12.45 55.49 0.69 -25.16 16 24 Si 1.06 24.81 30.00 -169.99 -5.10 19.71 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 28 C 0.16 2.49 6.40 -82.17 -0.53 1.97 16 29 C -0.11 -1.37 9.79 36.01 0.35 -1.01 16 30 N -0.49 -7.16 10.17 -5.42 -0.06 -7.22 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 37 H 0.10 1.95 5.14 -51.93 -0.27 1.68 16 38 H 0.08 1.17 4.05 -51.93 -0.21 0.96 16 39 H 0.06 0.87 6.32 -51.93 -0.33 0.55 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.41 4.89 -51.93 -0.25 1.15 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.87 7.44 -51.93 -0.39 0.48 16 44 H 0.06 0.84 6.23 -51.93 -0.32 0.52 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 1.73 7.53 -51.93 -0.39 1.34 16 48 H 0.27 7.65 6.72 -40.82 -0.27 7.37 16 49 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.08 1.06 7.07 -51.93 -0.37 0.70 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -31.22 385.05 -9.86 -41.08 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.80 Total: 5.52 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -2.61 Total: -3.75 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.24 Total: -56.48 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.10 Total: 19.71 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.22 -9.86 -41.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045817421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.817 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds