Wall clock time and date at job start Wed Apr 1 2020 03:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38356 * 119.45948 * 2 1 4 4 C 1.38361 * 119.30239 * 179.72092 * 3 2 1 5 5 C 1.50697 * 120.85508 * 180.30128 * 4 3 2 6 6 C 1.40023 * 118.28639 * 0.57015 * 4 3 2 7 7 C 1.47835 * 120.55539 * 179.73399 * 6 4 3 8 8 O 1.21556 * 120.00235 * 269.71780 * 7 6 4 9 9 N 1.34774 * 120.00203 * 89.72249 * 7 6 4 10 10 C 1.44786 * 120.18120 * 0.02562 * 9 7 6 11 11 C 1.51518 * 112.21883 * 264.53592 * 10 9 7 12 12 C 1.51315 * 113.25045 * 285.36175 * 11 10 9 13 13 H 1.08997 * 111.31791 * 185.24009 * 12 11 10 14 14 C 1.54720 * 107.22324 * 307.28013 * 12 11 10 15 15 C 1.54624 * 104.28709 * 89.34837 * 14 12 11 16 16 C 1.50868 * 105.21351 * 11.53873 * 15 14 12 17 17 H 1.08996 * 105.90431 * 122.36682 * 16 15 14 18 18 C 1.49819 * 120.18211 * 179.97438 * 9 7 6 19 19 N 1.48059 * 109.91192 * 8.03474 * 16 15 14 20 20 C 1.36934 * 127.84345 * 155.16352 * 19 16 15 21 21 H 1.08004 * 119.99418 * 24.90626 * 20 19 16 22 22 C 1.38811 * 120.00269 * 204.91404 * 20 19 16 23 23 N 1.31616 * 119.99967 * 27.05193 * 22 20 19 24 24 Si 1.86798 * 119.99971 * 207.05349 * 22 20 19 25 25 H 1.48501 * 109.47182 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47064 * 119.99942 * 24 22 20 27 27 H 1.48499 * 109.47067 * 240.00056 * 24 22 20 28 28 C 1.39524 * 118.88092 * 359.45778 * 6 4 3 29 29 C 1.50704 * 119.71488 * 180.27504 * 28 6 4 30 30 N 1.31686 * 120.56734 * 0.25371 * 28 6 4 31 31 H 1.08999 * 109.47268 * 269.97179 * 1 2 3 32 32 H 1.09003 * 109.47720 * 29.97283 * 1 2 3 33 33 H 1.09002 * 109.47324 * 149.96850 * 1 2 3 34 34 H 1.08000 * 120.34824 * 0.03710 * 3 2 1 35 35 H 1.08998 * 109.47332 * 270.27441 * 5 4 3 36 36 H 1.09000 * 109.47475 * 30.27492 * 5 4 3 37 37 H 1.09002 * 109.47143 * 150.27474 * 5 4 3 38 38 H 1.08999 * 108.93723 * 143.83099 * 10 9 7 39 39 H 1.09000 * 108.93018 * 25.23585 * 10 9 7 40 40 H 1.08999 * 108.72636 * 164.39463 * 11 10 9 41 41 H 1.09000 * 108.72794 * 46.33732 * 11 10 9 42 42 H 1.09001 * 110.45178 * 208.18931 * 14 12 11 43 43 H 1.08995 * 110.45398 * 330.74553 * 14 12 11 44 44 H 1.08996 * 110.16593 * 252.67715 * 15 14 12 45 45 H 1.09000 * 110.53233 * 130.58377 * 15 14 12 46 46 H 1.08999 * 109.54923 * 270.58302 * 18 9 7 47 47 H 1.09001 * 109.54384 * 30.85553 * 18 9 7 48 48 H 0.97004 * 120.00078 * 5.91463 * 23 22 20 49 49 H 1.09004 * 109.47110 * 89.99776 * 29 28 6 50 50 H 1.08996 * 109.47011 * 209.99870 * 29 28 6 51 51 H 1.09003 * 109.46790 * 330.00544 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2009 0.0059 5 6 4.3474 2.4924 0.0129 6 6 4.2312 -0.0339 -0.0006 7 6 5.7082 -0.0965 -0.0007 8 8 6.3155 -0.1217 -1.0534 9 7 6.3816 -0.1256 1.1664 10 6 5.6623 -0.0963 2.4226 11 6 5.5520 1.3054 2.9872 12 6 6.8467 1.8126 3.5841 13 1 6.7096 2.7828 4.0614 14 6 7.3315 0.7489 4.5977 15 6 8.2072 -0.2085 3.7567 16 6 8.4103 0.4961 2.4382 17 1 9.4889 0.5913 2.3133 18 6 7.8784 -0.1895 1.1710 19 7 7.8798 1.8762 2.5170 20 6 8.2522 2.9631 1.7720 21 1 8.6891 2.8235 0.7942 22 6 8.0683 4.2443 2.2735 23 7 8.0569 4.4466 3.5740 24 14 7.8368 5.6813 1.1027 25 1 7.8901 5.1919 -0.2983 26 1 6.5194 6.3183 1.3553 27 1 8.9175 6.6762 1.3205 28 6 3.4716 -1.2042 -0.0012 29 6 4.1627 -2.5434 -0.0018 30 7 2.1559 -1.1486 -0.0006 31 1 -0.3634 -0.0005 1.0276 32 1 -0.3635 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5143 34 1 1.6443 2.1382 0.0006 35 1 4.5348 2.8093 -1.0131 36 1 3.7718 3.2597 0.5307 37 1 5.2973 2.3426 0.5261 38 1 6.1826 -0.7277 3.1429 39 1 4.6598 -0.4941 2.2654 40 1 4.7840 1.3117 3.7607 41 1 5.2463 1.9813 2.1886 42 1 7.9219 1.2155 5.3863 43 1 6.4828 0.2129 5.0225 44 1 7.6889 -1.1550 3.6036 45 1 9.1663 -0.3784 4.2459 46 1 8.1990 -1.2313 1.1614 47 1 8.2679 0.3214 0.2905 48 1 8.2620 3.7175 4.1801 49 1 4.3294 -2.8668 1.0257 50 1 3.5384 -3.2742 -0.5160 51 1 5.1202 -2.4578 -0.5156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045817421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:47 Heat of formation + Delta-G solvation = 11.833374 kcal Electronic energy + Delta-G solvation = -32972.909657 eV Core-core repulsion = 29065.032063 eV Total energy + Delta-G solvation = -3907.877595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.24710 -41.00156 -39.56743 -36.19495 -35.36159 -34.85957 -34.50791 -33.68812 -31.15027 -30.21733 -29.40591 -28.63498 -28.09498 -27.42926 -25.69584 -24.27798 -23.00021 -22.15779 -21.43701 -21.09690 -20.06214 -19.33469 -18.41878 -18.05035 -17.62236 -16.50390 -16.35923 -16.06207 -15.84385 -15.80351 -15.72634 -15.36855 -14.93550 -14.66758 -14.44001 -14.28270 -14.19866 -14.00008 -13.91585 -13.83029 -13.69612 -13.37701 -13.19612 -13.01215 -12.94030 -12.80625 -12.72486 -12.65394 -12.62191 -12.50998 -12.02620 -12.00991 -11.82936 -11.65315 -11.39687 -11.28874 -10.88936 -10.57758 -10.51070 -10.42822 -9.80754 -9.64271 -8.87712 -8.24386 -5.34242 -0.16693 0.11148 1.43752 1.50843 1.55747 1.73268 1.95870 2.55141 2.57378 3.11460 3.15914 3.38679 3.49707 3.53548 3.59394 3.78874 3.85794 4.00669 4.02486 4.09137 4.23751 4.27409 4.28741 4.36742 4.45842 4.48355 4.50432 4.52631 4.55387 4.60578 4.64542 4.68836 4.72080 4.81922 4.82767 4.88174 4.96450 5.01976 5.06475 5.08961 5.12130 5.16575 5.20142 5.23461 5.34227 5.45191 5.53366 5.62898 5.65899 5.76888 6.36984 6.40922 6.86654 6.94933 7.05104 7.69930 8.42088 9.02393 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.004911 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.581319 B = 5700.274154 C = 6680.983103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.142 3.858 3 C -0.179 4.179 4 C -0.007 4.007 5 C -0.129 4.129 6 C -0.195 4.195 7 C 0.571 3.429 8 O -0.588 6.588 9 N -0.574 5.574 10 C 0.117 3.883 11 C -0.150 4.150 12 C 0.137 3.863 13 H 0.051 0.949 14 C -0.123 4.123 15 C -0.106 4.106 16 C 0.129 3.871 17 H 0.023 0.977 18 C 0.124 3.876 19 N -0.596 5.596 20 C -0.312 4.312 21 H 0.032 0.968 22 C -0.063 4.063 23 N -0.934 5.934 24 Si 1.097 2.903 25 H -0.287 1.287 26 H -0.281 1.281 27 H -0.290 1.290 28 C 0.161 3.839 29 C -0.104 4.104 30 N -0.499 5.499 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.167 0.833 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.041 0.959 48 H 0.260 0.740 49 H 0.100 0.900 50 H 0.095 0.905 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.885 -12.703 -0.183 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.005 3.995 3 C -0.198 4.198 4 C -0.015 4.015 5 C -0.185 4.185 6 C -0.201 4.201 7 C 0.359 3.641 8 O -0.470 6.470 9 N -0.304 5.304 10 C -0.005 4.005 11 C -0.190 4.190 12 C 0.031 3.969 13 H 0.069 0.931 14 C -0.162 4.162 15 C -0.144 4.144 16 C 0.022 3.978 17 H 0.041 0.959 18 C 0.000 4.000 19 N -0.319 5.319 20 C -0.441 4.441 21 H 0.050 0.950 22 C -0.261 4.261 23 N -0.576 5.576 24 Si 0.923 3.077 25 H -0.213 1.213 26 H -0.208 1.208 27 H -0.217 1.217 28 C 0.023 3.977 29 C -0.162 4.162 30 N -0.210 5.210 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.184 0.816 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.095 0.905 46 H 0.106 0.894 47 H 0.060 0.940 48 H 0.070 0.930 49 H 0.118 0.882 50 H 0.114 0.886 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.265 -11.747 -0.874 18.500 hybrid contribution 1.638 -0.094 -0.272 1.663 sum -12.627 -11.841 -1.146 17.348 Atomic orbital electron populations 1.20847 0.85572 1.04749 1.04510 1.22022 0.98871 0.87427 0.91222 1.22051 0.92523 1.01017 1.04228 1.20432 0.94874 0.93789 0.92369 1.21020 1.00163 0.94392 1.02936 1.20581 0.93422 0.95693 1.10359 1.18340 0.87137 0.75155 0.83484 1.90722 1.70513 1.52995 1.32767 1.48161 1.06826 1.69783 1.05587 1.21101 0.96731 0.97391 0.85326 1.21992 0.98984 0.97247 1.00758 1.21307 0.88714 0.97169 0.89729 0.93106 1.22697 0.99860 0.96477 0.97126 1.21810 1.00921 0.98454 0.93171 1.21066 0.96034 0.86822 0.93905 0.95878 1.22645 0.78213 1.00083 0.99043 1.45087 1.39709 1.04143 1.42934 1.19546 1.41953 0.86305 0.96346 0.94976 1.26579 1.00434 0.99975 0.99144 1.70804 1.49521 1.34376 1.02905 0.83082 0.77183 0.73870 0.73527 1.21336 1.20757 1.21714 1.21483 0.89272 0.94700 0.92233 1.20805 0.99327 0.91565 1.04457 1.67448 1.08242 1.29927 1.15430 0.88647 0.88435 0.90107 0.81599 0.90635 0.88840 0.92324 0.87699 0.90716 0.90459 0.93533 0.93085 0.88396 0.88374 0.90455 0.89446 0.93999 0.92982 0.88167 0.88619 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.16 71.23 0.72 -0.63 16 2 C 0.14 3.20 6.78 42.57 0.29 3.49 16 3 C -0.18 -4.26 9.43 22.33 0.21 -4.05 16 4 C -0.01 -0.21 5.94 -19.40 -0.12 -0.32 16 5 C -0.13 -4.36 8.81 71.23 0.63 -3.73 16 6 C -0.20 -6.43 3.86 -19.99 -0.08 -6.51 16 7 C 0.57 21.81 4.23 86.78 0.37 22.18 16 8 O -0.59 -27.18 16.76 -3.89 -0.07 -27.25 16 9 N -0.57 -20.03 2.86 -822.51 -2.36 -22.39 16 10 C 0.12 3.44 5.01 86.21 0.43 3.87 16 11 C -0.15 -5.19 5.04 29.56 0.15 -5.04 16 12 C 0.14 5.60 3.07 44.61 0.14 5.74 16 13 H 0.05 2.52 5.71 -2.39 -0.01 2.50 16 14 C -0.12 -3.82 6.04 31.73 0.19 -3.63 16 15 C -0.11 -3.01 5.82 30.45 0.18 -2.83 16 16 C 0.13 4.90 2.67 44.19 0.12 5.01 16 17 H 0.02 0.96 8.10 -2.39 -0.02 0.94 16 18 C 0.12 4.53 6.09 85.93 0.52 5.05 16 19 N -0.60 -27.96 2.43 -647.91 -1.57 -29.53 16 20 C -0.31 -17.37 10.10 84.03 0.85 -16.52 16 21 H 0.03 1.92 7.96 -2.91 -0.02 1.90 16 22 C -0.06 -3.56 5.18 84.86 0.44 -3.12 16 23 N -0.93 -54.95 12.45 21.65 0.27 -54.68 16 24 Si 1.10 52.06 30.00 68.60 2.06 54.12 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 28 C 0.16 4.61 6.40 42.89 0.27 4.88 16 29 C -0.10 -2.44 9.79 71.24 0.70 -1.75 16 30 N -0.50 -13.18 10.17 -171.06 -1.74 -14.92 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 0.93 8.07 -2.39 -0.02 0.91 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 35 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.09 2.72 8.10 -2.39 -0.02 2.70 16 37 H 0.06 2.46 5.14 -2.39 -0.01 2.45 16 38 H 0.11 2.57 4.05 -2.39 -0.01 2.56 16 39 H 0.07 2.01 6.32 -2.39 -0.02 2.00 16 40 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 1.87 4.89 -2.39 -0.01 1.85 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.10 2.34 7.44 -2.39 -0.02 2.32 16 44 H 0.10 2.14 6.23 -2.39 -0.01 2.13 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.04 1.87 7.53 -2.39 -0.02 1.85 16 48 H 0.26 15.35 6.72 -92.71 -0.62 14.73 16 49 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 50 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.06 1.63 7.07 -2.39 -0.02 1.61 16 Total: -1.00 -73.54 385.05 3.69 -69.85 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 1.09 Total: 22.72 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 6.01 Total: 2.08 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -5.40 Total: -121.52 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.07 Total: -27.25 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 2.06 Total: 54.12 kcal Total: -73.54 3.69 -69.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045817421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.683 kcal (2) G-P(sol) polarization free energy of solvation -73.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds