Wall clock time and date at job start Wed Apr 1 2020 02:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38605 * 119.54698 * 2 1 4 4 C 1.38584 * 119.34953 * 180.02562 * 3 2 1 5 5 C 1.38637 * 118.48775 * 0.02562 * 4 3 2 6 6 C 1.39264 * 119.06041 * 359.97438 * 5 4 3 7 7 C 1.48174 * 119.72265 * 180.02562 * 6 5 4 8 8 O 1.21521 * 119.99548 * 7.79717 * 7 6 5 9 9 N 1.34767 * 119.99961 * 187.80090 * 7 6 5 10 10 C 1.44577 * 118.79286 * 359.15085 * 9 7 6 11 11 C 1.54685 * 109.63027 * 270.64494 * 10 9 7 12 12 C 1.47014 * 110.64512 * 288.15358 * 11 10 9 13 13 C 1.52948 * 114.30890 * 62.90869 * 12 11 10 14 14 C 1.50557 * 109.11039 * 276.10943 * 13 12 11 15 15 C 1.53951 * 111.50223 * 214.30870 * 14 13 12 16 16 C 1.54138 * 104.89324 * 98.52458 * 15 14 13 17 17 N 1.47520 * 107.07102 * 358.24070 * 16 15 14 18 18 C 1.36938 * 126.98814 * 205.32785 * 17 16 15 19 19 H 1.08001 * 120.00126 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99868 * 359.97106 * 18 17 16 21 21 N 1.31617 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99909 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46907 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47024 * 119.99915 * 22 20 18 25 25 H 1.48500 * 109.47163 * 240.00168 * 22 20 18 26 26 C 1.48221 * 106.02178 * 25.30311 * 17 16 15 27 27 C 1.47595 * 118.79025 * 179.17386 * 9 7 6 28 28 N 1.31492 * 119.54795 * 180.29913 * 2 1 3 29 29 H 1.08996 * 109.47256 * 89.99750 * 1 2 3 30 30 H 1.09002 * 109.47416 * 210.00296 * 1 2 3 31 31 H 1.09002 * 109.47109 * 329.99518 * 1 2 3 32 32 H 1.07992 * 120.32578 * 0.04833 * 3 2 1 33 33 H 1.07998 * 120.76047 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.46490 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.43893 * 30.69228 * 10 9 7 36 36 H 1.08999 * 109.44471 * 150.59916 * 10 9 7 37 37 H 1.09000 * 109.24592 * 48.45499 * 11 10 9 38 38 H 1.09000 * 109.24271 * 167.85003 * 11 10 9 39 39 H 1.08999 * 108.51768 * 184.14849 * 12 11 10 40 40 H 1.09002 * 108.51460 * 301.80292 * 12 11 10 41 41 H 1.08999 * 109.51904 * 156.22187 * 13 12 11 42 42 H 1.08997 * 109.53309 * 36.00183 * 13 12 11 43 43 H 1.09004 * 110.35458 * 339.67062 * 15 14 13 44 44 H 1.08995 * 110.35595 * 217.38101 * 15 14 13 45 45 H 1.08999 * 109.91755 * 117.59494 * 16 15 14 46 46 H 1.09001 * 109.91533 * 238.88242 * 16 15 14 47 47 H 0.96999 * 120.00234 * 179.97438 * 21 20 18 48 48 H 1.08997 * 110.66594 * 79.86475 * 26 17 16 49 49 H 1.09001 * 110.66358 * 202.99014 * 26 17 16 50 50 H 1.09008 * 108.98833 * 17.44173 * 27 9 7 51 51 H 1.08995 * 108.99009 * 258.70545 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2010 -0.0005 5 6 4.2333 -0.0198 -0.0016 6 6 3.4820 -1.1923 -0.0016 7 6 4.1692 -2.5051 -0.0021 8 8 5.3748 -2.5599 0.1402 9 7 3.4571 -3.6383 -0.1605 10 6 2.0221 -3.5440 -0.3091 11 6 1.3508 -3.5973 1.0835 12 6 1.4346 -4.9523 1.6477 13 6 2.8612 -5.4407 1.9034 14 6 3.4243 -6.0077 0.6274 15 6 4.3649 -7.1946 0.9041 16 6 3.5009 -8.4487 0.6663 17 7 2.1449 -7.9812 0.3212 18 6 0.9698 -8.6630 0.4929 19 1 0.0346 -8.2100 0.1987 20 6 0.9807 -9.9366 1.0450 21 7 2.1203 -10.4886 1.4040 22 14 -0.6223 -10.8669 1.2786 23 1 -1.7531 -10.0331 0.7980 24 1 -0.5771 -12.1330 0.5038 25 1 -0.8107 -11.1745 2.7191 26 6 2.3130 -6.6233 -0.2487 27 6 4.1708 -4.9301 -0.1753 28 7 2.1554 -1.1439 -0.0060 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6484 2.1398 0.0008 33 1 4.1318 2.1272 -0.0010 34 1 5.3126 -0.0607 -0.0016 35 1 1.7691 -2.6032 -0.7981 36 1 1.6647 -4.3757 -0.9163 37 1 1.8536 -2.8982 1.7517 38 1 0.3031 -3.3119 0.9884 39 1 0.8889 -4.9688 2.5911 40 1 0.9521 -5.6449 0.9579 41 1 2.8492 -6.2138 2.6717 42 1 3.4784 -4.6056 2.2347 43 1 4.7172 -7.1668 1.9353 44 1 5.2084 -7.1788 0.2139 45 1 3.9128 -9.0328 -0.1566 46 1 3.4658 -9.0528 1.5729 47 1 2.1278 -11.3784 1.7901 48 1 2.6307 -6.6797 -1.2898 49 1 1.3898 -6.0509 -0.1576 50 1 5.1633 -4.7919 0.2539 51 1 4.2759 -5.2655 -1.2071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045913949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:06 Heat of formation + Delta-G solvation = 66.711862 kcal Electronic energy + Delta-G solvation = -31897.965506 eV Core-core repulsion = 27992.467621 eV Total energy + Delta-G solvation = -3905.497885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.22898 -39.88333 -38.36420 -36.00144 -33.60161 -33.27890 -33.11711 -32.45317 -30.44091 -28.66675 -28.07688 -27.10603 -25.87894 -24.80365 -24.50298 -22.86051 -22.39494 -21.33392 -19.89905 -19.39253 -17.94168 -17.32266 -17.08517 -16.75930 -16.34861 -15.84364 -15.48273 -15.11252 -14.79076 -14.66800 -14.23194 -14.05204 -13.71300 -13.66269 -13.42317 -13.05355 -12.91510 -12.81649 -12.60775 -12.55375 -12.30232 -12.08831 -11.80271 -11.64044 -11.59275 -11.31208 -10.91762 -10.83762 -10.73152 -10.40772 -10.29336 -10.15096 -10.05306 -10.02118 -9.65366 -9.62431 -9.50099 -9.27342 -9.19595 -8.99183 -8.62777 -8.32845 -6.80539 -5.61429 -3.01568 0.43844 0.90459 2.67170 3.04807 3.41290 3.46441 3.49091 3.61972 3.84165 4.35199 4.46597 4.51819 4.67700 4.78160 4.97113 5.08751 5.22488 5.25590 5.27017 5.29812 5.30158 5.42993 5.44843 5.57570 5.67098 5.71073 5.72757 5.78385 5.81233 5.91430 5.98544 6.06984 6.08960 6.16715 6.22507 6.30379 6.35569 6.45517 6.48401 6.50437 6.62031 6.68758 6.78948 6.83519 6.97130 7.08048 7.14731 7.43250 7.56804 7.60861 7.63867 7.89584 8.20778 8.40039 9.24033 9.85614 10.56666 11.43474 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.003129 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.898078 B = 8947.585094 C =10051.064234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.119 3.881 3 C -0.154 4.154 4 C -0.079 4.079 5 C -0.120 4.120 6 C 0.090 3.910 7 C 0.559 3.441 8 O -0.544 6.544 9 N -0.571 5.571 10 C 0.087 3.913 11 C -0.108 4.108 12 C -0.146 4.146 13 C -0.080 4.080 14 C -0.081 4.081 15 C -0.129 4.129 16 C 0.147 3.853 17 N -0.597 5.597 18 C -0.215 4.215 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.121 3.879 27 C 0.122 3.878 28 N -0.440 5.440 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.008 0.992 46 H 0.104 0.896 47 H 0.250 0.750 48 H 0.017 0.983 49 H 0.073 0.927 50 H 0.085 0.915 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 24.477 -2.943 24.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.021 4.021 3 C -0.174 4.174 4 C -0.105 4.105 5 C -0.141 4.141 6 C -0.048 4.048 7 C 0.345 3.655 8 O -0.422 6.422 9 N -0.300 5.300 10 C -0.036 4.036 11 C -0.146 4.146 12 C -0.183 4.183 13 C -0.118 4.118 14 C -0.083 4.083 15 C -0.169 4.169 16 C 0.022 3.978 17 N -0.321 5.321 18 C -0.343 4.343 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.570 5.570 22 Si 0.741 3.259 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.005 4.005 27 C 0.001 3.999 28 N -0.153 5.153 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.026 0.974 46 H 0.121 0.879 47 H 0.061 0.939 48 H 0.035 0.965 49 H 0.091 0.909 50 H 0.104 0.896 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.298 23.364 -2.808 23.534 hybrid contribution -0.251 0.211 0.153 0.362 sum -0.548 23.575 -2.654 23.730 Atomic orbital electron populations 1.20759 0.88266 1.03922 1.03372 1.21565 0.97441 0.88315 0.94738 1.22170 0.94997 0.99425 1.00796 1.21606 0.94448 0.98235 0.96184 1.22089 1.02253 0.91771 0.98016 1.21249 0.89716 0.94328 0.99515 1.18008 0.86338 0.83427 0.77709 1.90758 1.13612 1.86653 1.51132 1.47630 1.08355 1.05680 1.68358 1.22530 0.78365 1.04614 0.98139 1.20914 1.00008 0.97094 0.96593 1.20922 0.98026 0.97521 1.01817 1.20792 0.95299 0.99068 0.96617 1.21421 0.97122 0.93545 0.96209 1.22717 0.97533 0.96357 1.00256 1.21672 0.82801 0.91815 1.01500 1.44780 1.02952 1.13088 1.71256 1.19074 0.84464 0.96696 1.34070 0.90481 1.24760 0.96961 0.97263 1.01793 1.69792 1.23094 1.15751 1.48322 0.86057 0.82595 0.79804 0.77408 1.20580 1.21900 1.21870 1.22422 0.96332 0.87999 0.93750 1.22139 0.96121 0.81347 1.00339 1.68089 1.08301 1.27746 1.11203 0.90167 0.89906 0.90635 0.84522 0.84204 0.83588 0.85986 0.91099 0.92977 0.91785 0.93323 0.88792 0.91542 0.93527 0.92326 0.92930 0.97380 0.87867 0.93889 0.96527 0.90950 0.89619 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.17 36.00 0.37 -0.27 16 2 C 0.12 1.03 6.78 -82.60 -0.56 0.47 16 3 C -0.15 -1.09 9.75 -39.32 -0.38 -1.47 16 4 C -0.08 -0.60 10.17 -39.31 -0.40 -0.99 16 5 C -0.12 -1.26 9.63 -39.05 -0.38 -1.63 16 6 C 0.09 1.13 6.58 -83.01 -0.55 0.59 16 7 C 0.56 8.62 7.61 -12.18 -0.09 8.52 16 8 O -0.54 -9.70 15.64 5.35 0.08 -9.61 16 9 N -0.57 -8.61 2.30 -173.80 -0.40 -9.01 16 10 C 0.09 1.17 4.89 -4.18 -0.02 1.15 16 11 C -0.11 -1.46 4.92 -28.72 -0.14 -1.60 16 12 C -0.15 -2.38 5.02 -29.63 -0.15 -2.53 16 13 C -0.08 -1.42 4.89 -27.98 -0.14 -1.56 16 14 C -0.08 -1.45 0.57 -154.17 -0.09 -1.54 16 15 C -0.13 -2.53 5.91 -25.64 -0.15 -2.68 16 16 C 0.15 3.60 6.01 -2.89 -0.02 3.58 16 17 N -0.60 -14.89 3.36 -169.51 -0.57 -15.46 16 18 C -0.21 -5.85 10.37 -15.06 -0.16 -6.00 16 19 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 21 N -0.92 -26.91 10.21 55.49 0.57 -26.35 16 22 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 C 0.12 2.43 4.52 -2.40 -0.01 2.42 16 27 C 0.12 1.99 4.80 -3.07 -0.01 1.98 16 28 N -0.44 -4.93 4.69 -6.06 -0.03 -4.96 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.15 1.49 7.66 -52.48 -0.40 1.08 16 35 H 0.12 1.53 4.74 -69.27 -0.33 1.20 16 36 H 0.07 1.00 5.77 -51.93 -0.30 0.70 16 37 H 0.05 0.75 7.65 -51.93 -0.40 0.35 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.72 4.42 -51.93 -0.23 1.49 16 41 H 0.07 1.32 7.69 -51.93 -0.40 0.92 16 42 H 0.05 0.81 7.58 -51.93 -0.39 0.42 16 43 H 0.06 1.11 7.71 -51.93 -0.40 0.71 16 44 H 0.05 0.94 7.78 -51.93 -0.40 0.54 16 45 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.10 2.84 5.87 -51.93 -0.30 2.54 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.02 0.35 7.65 -51.93 -0.40 -0.05 16 49 H 0.07 1.40 3.45 -51.93 -0.18 1.22 16 50 H 0.09 1.46 6.87 -51.92 -0.36 1.11 16 51 H 0.06 1.03 7.63 -51.93 -0.40 0.63 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -31.74 378.66 -10.45 -42.19 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.81 Total: 2.51 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.97 Total: -2.01 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.43 Total: -55.77 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.74 -10.45 -42.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045913949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.901 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds