Wall clock time and date at job start Wed Apr 1 2020 02:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38358 * 119.45592 * 2 1 4 4 C 1.38358 * 119.29799 * 179.72093 * 3 2 1 5 5 C 1.40019 * 118.29208 * 0.52215 * 4 3 2 6 6 C 1.47842 * 120.56236 * 179.73462 * 5 4 3 7 7 O 1.21548 * 120.00041 * 31.87291 * 6 5 4 8 8 N 1.34774 * 120.00012 * 211.87607 * 6 5 4 9 9 C 1.47565 * 118.62737 * 162.36079 * 8 6 5 10 10 C 1.53929 * 112.20998 * 137.78247 * 9 8 6 11 11 C 1.50890 * 110.11836 * 319.40314 * 10 9 8 12 12 C 1.52524 * 109.30366 * 91.91588 * 11 10 9 13 13 C 1.47114 * 114.27354 * 275.13009 * 12 11 10 14 14 C 1.54247 * 112.24564 * 301.70560 * 13 12 11 15 15 C 1.54388 * 104.89188 * 237.45655 * 14 13 12 16 16 N 1.48143 * 104.64523 * 23.90567 * 15 14 13 17 17 C 1.36935 * 127.81141 * 140.43594 * 16 15 14 18 18 H 1.08005 * 120.00137 * 344.69118 * 17 16 15 19 19 C 1.38813 * 119.99883 * 164.69054 * 17 16 15 20 20 N 1.31618 * 120.00287 * 350.85635 * 19 17 16 21 21 Si 1.86801 * 119.99853 * 170.86034 * 19 17 16 22 22 H 1.48502 * 109.47055 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.46945 * 119.99711 * 21 19 17 24 24 H 1.48492 * 109.47272 * 239.99580 * 21 19 17 25 25 C 1.48121 * 104.37703 * 320.48182 * 16 15 14 26 26 C 1.44640 * 118.62696 * 342.33974 * 8 6 5 27 27 C 1.39521 * 118.88071 * 359.45976 * 5 4 3 28 28 N 1.31692 * 120.56590 * 0.29761 * 27 5 4 29 29 H 1.08994 * 109.47225 * 270.02019 * 1 2 3 30 30 H 1.09003 * 109.47352 * 30.02346 * 1 2 3 31 31 H 1.09002 * 109.46919 * 150.02279 * 1 2 3 32 32 H 1.08001 * 120.35033 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.85595 * 180.25246 * 4 3 2 34 34 H 1.08993 * 108.93892 * 258.49290 * 9 8 6 35 35 H 1.09006 * 108.93240 * 17.17459 * 9 8 6 36 36 H 1.08996 * 109.36691 * 199.20354 * 10 9 8 37 37 H 1.08997 * 109.35799 * 79.59683 * 10 9 8 38 38 H 1.09001 * 109.49812 * 331.97422 * 11 10 9 39 39 H 1.08991 * 109.49867 * 211.86250 * 11 10 9 40 40 H 1.08998 * 108.52233 * 36.37026 * 12 11 10 41 41 H 1.08997 * 108.51801 * 153.88959 * 12 11 10 42 42 H 1.09004 * 110.35350 * 356.30634 * 14 13 12 43 43 H 1.08989 * 110.35914 * 118.60163 * 14 13 12 44 44 H 1.09003 * 110.40134 * 142.69839 * 15 14 13 45 45 H 1.08996 * 110.39661 * 265.00028 * 15 14 13 46 46 H 0.96993 * 120.00318 * 179.97438 * 20 19 17 47 47 H 1.08997 * 110.41048 * 280.61049 * 25 16 15 48 48 H 1.09003 * 110.40573 * 158.17594 * 25 16 15 49 49 H 1.09000 * 109.47392 * 150.50469 * 26 8 6 50 50 H 1.09005 * 109.46544 * 30.52086 * 26 8 6 51 51 H 1.08007 * 119.72153 * 180.27563 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2009 0.0059 5 6 4.2312 -0.0338 0.0004 6 6 5.7083 -0.0964 0.0004 7 8 6.3532 0.7685 0.5603 8 7 6.3397 -1.1124 -0.6205 9 6 7.7699 -0.9599 -0.9502 10 6 8.5746 -2.2386 -0.6555 11 6 8.1144 -2.8536 0.6432 12 6 7.0168 -3.8733 0.3572 13 6 5.6675 -3.2964 0.2531 14 6 5.2529 -2.5457 1.5352 15 6 3.9494 -3.2341 1.9941 16 7 4.0131 -4.5901 1.4010 17 6 3.6330 -5.7751 1.9724 18 1 3.4673 -5.8321 3.0382 19 6 3.4606 -6.9030 1.1819 20 7 3.4849 -6.7974 -0.1298 21 14 3.1940 -8.5709 1.9799 22 1 3.2093 -8.4209 3.4572 23 1 1.8827 -9.1207 1.5513 24 1 4.2783 -9.4969 1.5655 25 6 4.5821 -4.3745 0.0505 26 6 5.5873 -2.3069 -0.9353 27 6 3.4717 -1.2041 0.0008 28 7 2.1559 -1.1486 0.0004 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6442 2.1382 -0.0004 33 1 4.1274 2.1265 0.0101 34 1 7.8651 -0.7182 -2.0088 35 1 8.1830 -0.1402 -0.3622 36 1 9.6334 -1.9906 -0.5828 37 1 8.4275 -2.9528 -1.4657 38 1 7.7247 -2.0735 1.2972 39 1 8.9546 -3.3499 1.1286 40 1 7.2501 -4.3797 -0.5794 41 1 7.0159 -4.6143 1.1566 42 1 6.0238 -2.6459 2.2993 43 1 5.0694 -1.4939 1.3162 44 1 3.9151 -3.2963 3.0818 45 1 3.0813 -2.6932 1.6176 46 1 3.3648 -7.5856 -0.6821 47 1 3.8128 -4.0157 -0.6332 48 1 5.0269 -5.2957 -0.3260 49 1 6.0049 -2.7750 -1.8267 50 1 4.5457 -2.0424 -1.1182 51 1 3.9670 -2.1640 0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045915977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:19 Heat of formation + Delta-G solvation = 85.839742 kcal Electronic energy + Delta-G solvation = -32936.216453 eV Core-core repulsion = 29031.548015 eV Total energy + Delta-G solvation = -3904.668438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.85423 -39.51307 -38.40500 -36.06265 -34.31360 -33.15099 -32.62170 -32.07707 -31.02259 -28.61553 -28.07909 -27.32188 -25.98662 -24.63587 -23.63878 -23.51028 -22.24575 -20.93824 -20.36562 -19.50017 -18.39668 -17.59744 -16.94741 -16.51749 -16.20293 -16.08948 -15.45893 -14.85721 -14.63011 -14.43159 -14.41326 -13.96879 -13.74493 -13.58240 -13.37537 -13.13966 -12.92284 -12.85753 -12.61010 -12.24728 -12.19405 -12.04780 -11.90621 -11.69714 -11.21812 -11.16994 -11.01440 -10.83416 -10.77953 -10.63760 -10.30238 -10.08203 -9.97134 -9.94334 -9.93551 -9.78402 -9.69301 -9.63034 -9.22098 -8.80064 -8.65129 -8.40873 -6.81940 -5.77627 -3.10317 0.75227 1.28025 2.78212 3.02171 3.38719 3.45574 3.47392 3.81066 4.29179 4.48343 4.56173 4.70008 4.83298 4.90528 4.96993 4.98985 5.03800 5.09592 5.19845 5.33433 5.38602 5.45430 5.50187 5.56780 5.58744 5.66097 5.67391 5.71015 5.77361 5.87905 5.89680 5.91321 5.97394 6.04357 6.08665 6.12654 6.16715 6.25787 6.34325 6.50257 6.56004 6.62620 6.63691 6.70389 6.75946 6.81704 7.01015 7.26533 7.41367 7.50884 7.72093 8.04082 8.16666 8.21804 9.13001 9.75947 10.52467 11.36570 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009778 B = 0.005203 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.753231 B = 5380.090150 C = 7621.603163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.145 3.855 3 C -0.190 4.190 4 C -0.021 4.021 5 C -0.207 4.207 6 C 0.570 3.430 7 O -0.543 6.543 8 N -0.596 5.596 9 C 0.114 3.886 10 C -0.129 4.129 11 C -0.118 4.118 12 C -0.091 4.091 13 C -0.100 4.100 14 C -0.145 4.145 15 C 0.110 3.890 16 N -0.587 5.587 17 C -0.220 4.220 18 H 0.076 0.924 19 C -0.005 4.005 20 N -0.915 5.915 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.164 3.836 26 C 0.075 3.925 27 C 0.108 3.892 28 N -0.475 5.475 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.044 0.956 45 H 0.039 0.961 46 H 0.253 0.747 47 H 0.026 0.974 48 H 0.094 0.906 49 H 0.082 0.918 50 H 0.106 0.894 51 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.321 14.441 -4.132 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.008 3.992 3 C -0.210 4.210 4 C -0.047 4.047 5 C -0.212 4.212 6 C 0.359 3.641 7 O -0.421 6.421 8 N -0.327 5.327 9 C -0.008 4.008 10 C -0.167 4.167 11 C -0.156 4.156 12 C -0.129 4.129 13 C -0.103 4.103 14 C -0.184 4.184 15 C -0.016 4.016 16 N -0.311 5.311 17 C -0.349 4.349 18 H 0.093 0.907 19 C -0.202 4.202 20 N -0.562 5.562 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.038 3.962 26 C -0.048 4.048 27 C -0.048 4.048 28 N -0.184 5.184 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.112 0.888 49 H 0.101 0.899 50 H 0.123 0.877 51 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.132 13.849 -3.903 14.726 hybrid contribution 0.346 -0.108 0.356 0.508 sum 3.478 13.742 -3.547 14.612 Atomic orbital electron populations 1.20783 0.88731 1.03609 1.03379 1.21671 0.97428 0.88573 0.91572 1.21868 0.94374 0.99413 1.05333 1.21553 0.94118 0.97239 0.91771 1.21030 0.94663 0.95860 1.09692 1.18013 0.86829 0.81476 0.77773 1.90731 1.67383 1.40840 1.43188 1.47510 1.10363 1.15732 1.59087 1.21836 0.79621 0.99222 1.00097 1.21769 0.99089 0.96876 0.98972 1.21108 0.98346 0.99167 0.96962 1.20234 0.92530 0.97717 1.02377 1.21436 0.98237 0.96884 0.93788 1.23130 0.99624 0.98222 0.97395 1.22002 0.94280 0.88073 0.97274 1.44832 1.72279 1.00520 1.13437 1.19026 1.39294 0.85005 0.91542 0.90663 1.24834 1.01492 0.98398 0.95450 1.69876 1.55632 1.28147 1.02515 0.86095 0.77378 0.84149 0.78437 1.20485 1.21757 1.21736 1.21670 0.90700 0.95866 0.88013 1.22927 0.97880 0.85077 0.98955 1.25440 0.89720 1.00397 0.89288 1.67857 1.09590 1.28368 1.12608 0.90050 0.90760 0.89960 0.84459 0.84242 0.92092 0.89357 0.91071 0.91391 0.91456 0.92236 0.92337 0.91337 0.91819 0.92081 0.93749 0.94383 0.93703 0.95619 0.88815 0.89946 0.87671 0.76279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.16 36.00 0.37 -0.75 16 2 C 0.15 1.99 6.78 -82.51 -0.56 1.43 16 3 C -0.19 -2.26 9.72 -39.49 -0.38 -2.64 16 4 C -0.02 -0.28 9.74 -38.87 -0.38 -0.65 16 5 C -0.21 -3.25 5.11 -104.82 -0.54 -3.79 16 6 C 0.57 9.21 5.40 -12.33 -0.07 9.14 16 7 O -0.54 -9.84 16.17 5.32 0.09 -9.75 16 8 N -0.60 -8.62 2.04 -173.65 -0.35 -8.97 16 9 C 0.11 1.39 6.17 -2.97 -0.02 1.37 16 10 C -0.13 -1.45 5.71 -27.31 -0.16 -1.61 16 11 C -0.12 -1.61 5.35 -28.03 -0.15 -1.76 16 12 C -0.09 -1.47 3.85 -29.80 -0.11 -1.59 16 13 C -0.10 -1.76 0.54 -155.01 -0.08 -1.84 16 14 C -0.14 -2.66 4.39 -25.35 -0.11 -2.77 16 15 C 0.11 2.35 6.65 -2.41 -0.02 2.33 16 16 N -0.59 -14.48 3.38 -168.92 -0.57 -15.05 16 17 C -0.22 -6.00 10.35 -15.06 -0.16 -6.16 16 18 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 19 C 0.00 -0.13 5.40 -17.43 -0.09 -0.23 16 20 N -0.91 -25.85 10.86 55.49 0.60 -25.25 16 21 Si 0.91 21.68 29.56 -169.99 -5.03 16.65 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.16 3.65 4.60 -2.46 -0.01 3.63 16 26 C 0.07 1.14 4.14 -4.06 -0.02 1.12 16 27 C 0.11 1.83 5.43 -17.13 -0.09 1.74 16 28 N -0.48 -8.14 9.77 -11.38 -0.11 -8.25 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.14 1.64 8.01 -52.49 -0.42 1.22 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.15 6.91 -51.93 -0.36 0.79 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.74 7.31 -51.93 -0.38 0.36 16 38 H 0.07 1.03 6.05 -51.93 -0.31 0.72 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.90 7.37 -51.93 -0.38 0.52 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.18 6.97 -51.93 -0.36 0.82 16 43 H 0.06 1.09 2.59 -51.94 -0.13 0.96 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.04 0.83 5.48 -51.93 -0.28 0.55 16 46 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.03 0.61 6.97 -51.93 -0.36 0.25 16 48 H 0.09 2.33 6.25 -51.93 -0.32 2.01 16 49 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 50 H 0.11 1.70 3.49 -57.03 -0.20 1.50 16 51 H 0.22 3.96 0.59 -52.48 -0.03 3.93 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -31.24 367.97 -9.73 -40.97 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.32 Total: 7.12 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.58 Total: -3.01 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.43 Total: -57.52 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.24 -9.73 -40.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045915977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.808 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds