Wall clock time and date at job start Wed Apr 1 2020 03:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38397 * 120.85876 * 2 1 4 4 C 1.38305 * 119.30735 * 179.97438 * 3 2 1 5 5 N 1.31952 * 121.07995 * 0.02562 * 4 3 2 6 6 C 1.31666 * 121.87976 * 359.68682 * 5 4 3 7 7 C 1.39556 * 120.56673 * 0.57983 * 6 5 4 8 8 C 1.47837 * 120.56143 * 179.73234 * 7 6 5 9 9 O 1.21551 * 120.00194 * 124.74185 * 8 7 6 10 10 N 1.34777 * 119.99893 * 304.73318 * 8 7 6 11 11 C 1.44575 * 118.78794 * 354.37718 * 10 8 7 12 12 C 1.54687 * 109.61676 * 270.60329 * 11 10 8 13 13 C 1.47022 * 110.64840 * 288.16455 * 12 11 10 14 14 C 1.53021 * 114.31591 * 62.90380 * 13 12 11 15 15 C 1.50546 * 109.10170 * 276.11962 * 14 13 12 16 16 C 1.53942 * 111.51572 * 214.31123 * 15 14 13 17 17 C 1.54150 * 104.89578 * 98.52191 * 16 15 14 18 18 N 1.47531 * 107.07331 * 358.27044 * 17 16 15 19 19 C 1.36935 * 126.98496 * 205.30639 * 18 17 16 20 20 H 1.07995 * 120.00371 * 179.97438 * 19 18 17 21 21 C 1.38819 * 119.99899 * 359.97098 * 19 18 17 22 22 N 1.31612 * 120.00129 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99827 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47170 * 89.99946 * 23 21 19 25 25 H 1.48499 * 109.47364 * 209.99929 * 23 21 19 26 26 H 1.48502 * 109.47613 * 329.99848 * 23 21 19 27 27 C 1.48215 * 106.02891 * 25.26416 * 18 17 16 28 28 C 1.47594 * 118.78348 * 174.34910 * 10 8 7 29 29 H 1.09012 * 109.46767 * 274.97870 * 1 2 3 30 30 H 1.08997 * 109.47080 * 34.97705 * 1 2 3 31 31 H 1.08995 * 109.47398 * 154.98458 * 1 2 3 32 32 H 1.08002 * 120.34379 * 359.95482 * 3 2 1 33 33 H 1.08001 * 119.45714 * 180.02562 * 4 3 2 34 34 H 1.08007 * 119.71798 * 180.30998 * 6 5 4 35 35 H 1.08999 * 109.44382 * 30.64506 * 11 10 8 36 36 H 1.08994 * 109.44694 * 150.55333 * 11 10 8 37 37 H 1.09000 * 109.24526 * 48.46769 * 12 11 10 38 38 H 1.09002 * 109.24216 * 167.86995 * 12 11 10 39 39 H 1.08996 * 108.51699 * 184.15722 * 13 12 11 40 40 H 1.09003 * 108.51301 * 301.81168 * 13 12 11 41 41 H 1.09002 * 109.53064 * 156.23413 * 14 13 12 42 42 H 1.09000 * 109.53236 * 36.01055 * 14 13 12 43 43 H 1.09005 * 110.35434 * 339.67350 * 16 15 14 44 44 H 1.08999 * 110.35538 * 217.38159 * 16 15 14 45 45 H 1.09000 * 109.91076 * 117.62343 * 17 16 15 46 46 H 1.09002 * 109.91503 * 238.90590 * 17 16 15 47 47 H 0.97003 * 120.00504 * 180.02562 * 22 21 19 48 48 H 1.09005 * 110.66529 * 79.89456 * 27 18 17 49 49 H 1.08997 * 110.67026 * 203.01995 * 27 18 17 50 50 H 1.08998 * 108.98797 * 17.46264 * 28 10 8 51 51 H 1.09005 * 108.98417 * 258.72374 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0025 0.0005 6 6 3.6197 -1.1536 0.0062 7 6 2.2249 -1.2018 0.0002 8 6 1.5176 -2.4999 0.0006 9 8 0.6963 -2.7443 0.8626 10 7 1.7833 -3.4124 -0.9551 11 6 2.6715 -3.0494 -2.0366 12 6 1.8544 -2.4261 -3.1927 13 6 1.0621 -3.4554 -3.8814 14 6 0.0076 -4.1316 -3.0027 15 6 0.6558 -5.2445 -2.2232 16 6 -0.3074 -6.4284 -2.0219 17 6 0.0789 -7.4438 -3.1155 18 7 1.1662 -6.8363 -3.9062 19 6 1.4931 -7.1134 -5.2067 20 1 2.3165 -6.5977 -5.6783 21 6 0.7661 -8.0574 -5.9191 22 7 -0.2376 -8.6856 -5.3447 23 14 1.2116 -8.4350 -7.6934 24 1 2.2063 -9.5371 -7.7303 25 1 -0.0087 -8.8446 -8.4338 26 1 1.7916 -7.2235 -8.3268 27 6 1.8321 -5.8642 -3.0071 28 6 1.1573 -4.7455 -0.8586 29 1 -0.3633 0.0892 1.0239 30 1 -0.3633 0.8420 -0.5891 31 1 -0.3634 -0.9312 -0.4345 32 1 1.6966 2.1345 -0.0007 33 1 4.1558 2.0763 0.0010 34 1 4.1871 -2.0726 0.0110 35 1 3.4031 -2.3255 -1.6778 36 1 3.1883 -3.9392 -2.3960 37 1 1.1842 -1.6665 -2.7902 38 1 2.5364 -1.9615 -3.9049 39 1 0.5601 -2.9943 -4.7319 40 1 1.7409 -4.2219 -4.2555 41 1 -0.7835 -4.5400 -3.6317 42 1 -0.4146 -3.4012 -2.3126 43 1 -1.3396 -6.1039 -2.1535 44 1 -0.1695 -6.8654 -1.0330 45 1 0.4261 -8.3695 -2.6566 46 1 -0.7797 -7.6435 -3.7567 47 1 -0.7454 -9.3456 -5.8423 48 1 2.5190 -6.3735 -2.3311 49 1 2.3541 -5.1011 -3.5844 50 1 0.3150 -4.6927 -0.1688 51 1 1.8890 -5.4535 -0.4691 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045923647.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:57 Heat of formation + Delta-G solvation = 49.929041 kcal Electronic energy + Delta-G solvation = -31983.800268 eV Core-core repulsion = 28077.574625 eV Total energy + Delta-G solvation = -3906.225643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.29700 -39.97587 -38.44442 -36.09857 -34.20483 -33.61472 -33.13663 -31.76982 -30.47435 -28.77966 -28.29085 -27.16111 -25.81553 -24.97588 -24.54473 -22.97474 -22.43196 -21.52798 -19.94075 -19.32602 -18.09806 -17.49580 -17.09556 -16.78419 -16.64003 -16.40208 -15.33217 -15.29908 -14.73791 -14.53880 -14.35543 -13.99109 -13.91115 -13.58551 -13.26803 -13.22163 -13.07677 -13.02384 -12.99129 -12.73545 -12.41923 -12.02072 -11.92351 -11.77977 -11.74049 -11.38934 -11.04286 -10.87584 -10.82213 -10.47897 -10.38063 -10.14283 -10.11010 -9.88023 -9.78386 -9.69906 -9.58674 -9.54751 -9.37285 -9.21979 -8.67682 -8.54156 -6.86809 -5.66609 -3.07182 0.54573 0.89330 2.52347 2.94896 3.38100 3.43065 3.45078 3.46825 4.06770 4.29508 4.37607 4.43294 4.47254 4.73764 4.86244 4.93007 5.02767 5.10010 5.16194 5.17758 5.28022 5.33502 5.35150 5.46423 5.51908 5.55464 5.57723 5.69906 5.70083 5.79390 5.83920 5.92302 5.96632 6.02934 6.05695 6.15445 6.26187 6.27827 6.29463 6.38733 6.42395 6.52474 6.66641 6.69643 6.87380 6.95612 7.00623 7.34932 7.51149 7.57709 7.58598 7.84039 8.06157 8.34458 9.18486 9.80086 10.50508 11.38123 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.003035 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.967661 B = 9224.499194 C = 9751.753837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.004 3.996 3 C -0.178 4.178 4 C 0.113 3.887 5 N -0.488 5.488 6 C 0.134 3.866 7 C -0.174 4.174 8 C 0.560 3.440 9 O -0.533 6.533 10 N -0.587 5.587 11 C 0.093 3.907 12 C -0.126 4.126 13 C -0.144 4.144 14 C -0.080 4.080 15 C -0.082 4.082 16 C -0.129 4.129 17 C 0.147 3.853 18 N -0.596 5.596 19 C -0.218 4.218 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.120 3.880 28 C 0.125 3.875 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.009 0.991 46 H 0.104 0.896 47 H 0.251 0.749 48 H 0.018 0.982 49 H 0.071 0.929 50 H 0.088 0.912 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 18.842 9.904 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.004 4.004 3 C -0.198 4.198 4 C -0.042 4.042 5 N -0.197 5.197 6 C -0.024 4.024 7 C -0.179 4.179 8 C 0.347 3.653 9 O -0.411 6.411 10 N -0.318 5.318 11 C -0.030 4.030 12 C -0.164 4.164 13 C -0.181 4.181 14 C -0.118 4.118 15 C -0.084 4.084 16 C -0.168 4.168 17 C 0.022 3.978 18 N -0.320 5.320 19 C -0.347 4.347 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.006 4.006 28 C 0.003 3.997 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.179 0.821 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.027 0.973 46 H 0.122 0.878 47 H 0.062 0.938 48 H 0.036 0.964 49 H 0.089 0.911 50 H 0.106 0.894 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.549 18.528 10.114 21.594 hybrid contribution -0.637 -0.284 -0.926 1.160 sum 3.911 18.244 9.188 20.798 Atomic orbital electron populations 1.20895 0.89562 1.03652 1.03527 1.20348 0.97081 0.91448 0.91561 1.21997 0.95594 0.98528 1.03699 1.22902 0.91710 0.96403 0.93226 1.67712 1.40686 0.98230 1.13089 1.22913 0.90115 0.96643 0.92752 1.20907 0.95596 0.94393 1.06975 1.18158 0.81937 0.83230 0.82011 1.90780 1.33605 1.78819 1.37886 1.47643 1.46678 1.13758 1.23739 1.21962 0.92197 1.01394 0.87477 1.21157 0.99175 0.98611 0.97471 1.20864 0.99403 0.99113 0.98717 1.20809 0.97728 0.95756 0.97480 1.21437 0.98055 0.95587 0.93355 1.22715 0.97872 0.96274 0.99967 1.21683 0.94403 0.91009 0.90715 1.44760 1.33939 1.44460 1.08866 1.19017 1.11993 1.17869 0.85777 0.90532 1.24760 0.98371 0.99065 0.98417 1.69775 1.22166 1.29454 1.35468 0.86130 0.77188 0.78079 0.84440 1.21715 1.21741 1.20743 1.22423 0.93039 0.92496 0.92625 1.22122 0.98154 0.81023 0.98393 0.89692 0.90780 0.90653 0.84222 0.82369 0.82116 0.90400 0.89135 0.92759 0.91289 0.92898 0.88483 0.91328 0.93395 0.92287 0.92882 0.97329 0.87845 0.93777 0.96422 0.91143 0.89398 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.38 36.01 0.34 -0.80 16 2 C 0.00 0.04 5.95 -103.91 -0.62 -0.58 16 3 C -0.18 -1.44 9.82 -39.50 -0.39 -1.83 16 4 C 0.11 0.95 11.17 -17.48 -0.20 0.76 16 5 N -0.49 -5.19 10.35 -12.91 -0.13 -5.32 16 6 C 0.13 1.44 8.69 -17.13 -0.15 1.29 16 7 C -0.17 -2.02 4.89 -104.82 -0.51 -2.54 16 8 C 0.56 7.72 6.07 -12.33 -0.07 7.65 16 9 O -0.53 -8.93 15.42 5.32 0.08 -8.85 16 10 N -0.59 -7.73 2.30 -173.93 -0.40 -8.13 16 11 C 0.09 1.08 5.13 -4.18 -0.02 1.06 16 12 C -0.13 -1.51 5.71 -28.71 -0.16 -1.68 16 13 C -0.14 -2.14 5.02 -29.59 -0.15 -2.29 16 14 C -0.08 -1.30 4.89 -27.95 -0.14 -1.44 16 15 C -0.08 -1.37 0.57 -154.17 -0.09 -1.45 16 16 C -0.13 -2.39 5.91 -25.64 -0.15 -2.54 16 17 C 0.15 3.47 6.01 -2.88 -0.02 3.45 16 18 N -0.60 -14.34 3.36 -169.48 -0.57 -14.91 16 19 C -0.22 -5.79 10.37 -15.06 -0.16 -5.94 16 20 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -26.35 10.21 55.49 0.57 -25.78 16 23 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.12 2.27 4.52 -2.40 -0.01 2.26 16 28 C 0.12 1.84 4.83 -3.07 -0.01 1.82 16 29 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.07 0.87 6.73 -51.93 -0.35 0.52 16 32 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.16 1.50 7.46 -52.48 -0.39 1.11 16 35 H 0.08 0.79 4.25 -51.93 -0.22 0.57 16 36 H 0.09 1.08 5.78 -51.93 -0.30 0.78 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.10 1.65 4.42 -51.93 -0.23 1.42 16 41 H 0.07 1.27 7.69 -51.93 -0.40 0.87 16 42 H 0.05 0.75 7.58 -51.93 -0.39 0.36 16 43 H 0.06 1.06 7.71 -51.93 -0.40 0.66 16 44 H 0.05 0.90 7.78 -51.93 -0.40 0.49 16 45 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.10 2.77 5.87 -51.93 -0.30 2.46 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.02 0.35 7.65 -51.93 -0.40 -0.05 16 49 H 0.07 1.26 3.44 -51.93 -0.18 1.08 16 50 H 0.09 1.38 6.83 -51.93 -0.35 1.03 16 51 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -31.04 378.85 -10.02 -41.06 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.65 Total: 2.80 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.60 Total: -3.19 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.54 Total: -54.13 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.08 Total: -8.85 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.04 -10.02 -41.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045923647.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.990 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds