Wall clock time and date at job start Wed Apr 1 2020 03:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38402 * 120.85494 * 2 1 4 4 C 1.38315 * 119.29803 * 179.75441 * 3 2 1 5 5 N 1.31949 * 121.08817 * 0.53026 * 4 3 2 6 6 C 1.31669 * 121.87332 * 359.74553 * 5 4 3 7 7 C 1.39556 * 120.56999 * 359.97207 * 6 5 4 8 8 C 1.47845 * 120.56113 * 180.02562 * 7 6 5 9 9 O 1.21549 * 119.99891 * 232.07897 * 8 7 6 10 10 N 1.34779 * 119.99695 * 52.08124 * 8 7 6 11 11 C 1.47567 * 118.63533 * 0.80037 * 10 8 7 12 12 C 1.54326 * 111.96171 * 137.73019 * 11 10 8 13 13 C 1.50873 * 110.31884 * 319.66205 * 12 11 10 14 14 C 1.52607 * 109.37356 * 91.76088 * 13 12 11 15 15 C 1.47087 * 114.26830 * 275.25929 * 14 13 12 16 16 C 1.54258 * 112.34168 * 301.71183 * 15 14 13 17 17 C 1.54399 * 104.94510 * 237.63755 * 16 15 14 18 18 N 1.48153 * 104.61706 * 23.86956 * 17 16 15 19 19 C 1.36931 * 127.83294 * 140.41381 * 18 17 16 20 20 H 1.08008 * 120.00328 * 341.50229 * 19 18 17 21 21 C 1.38809 * 119.99882 * 161.50780 * 19 18 17 22 22 N 1.31611 * 120.00074 * 1.97997 * 21 19 18 23 23 Si 1.86800 * 119.99958 * 181.98119 * 21 19 18 24 24 H 1.48502 * 109.47508 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47434 * 120.00293 * 23 21 19 26 26 H 1.48509 * 109.47142 * 240.00073 * 23 21 19 27 27 C 1.48156 * 104.32861 * 320.43466 * 18 17 16 28 28 C 1.44592 * 118.63386 * 181.06842 * 10 8 7 29 29 H 1.08999 * 109.47261 * 266.25445 * 1 2 3 30 30 H 1.08999 * 109.46943 * 146.25245 * 1 2 3 31 31 H 1.09000 * 109.47130 * 26.25385 * 1 2 3 32 32 H 1.07988 * 120.34802 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.45439 * 180.27094 * 4 3 2 34 34 H 1.08011 * 119.71369 * 180.02562 * 6 5 4 35 35 H 1.09002 * 108.93497 * 258.54159 * 11 10 8 36 36 H 1.08992 * 108.94088 * 17.15340 * 11 10 8 37 37 H 1.09007 * 109.34941 * 199.35528 * 12 11 10 38 38 H 1.09001 * 109.20542 * 79.87639 * 12 11 10 39 39 H 1.09008 * 109.48349 * 331.79380 * 13 12 11 40 40 H 1.08998 * 109.48667 * 211.73506 * 13 12 11 41 41 H 1.08998 * 108.52937 * 154.01977 * 14 13 12 42 42 H 1.09005 * 108.52391 * 36.49370 * 14 13 12 43 43 H 1.08992 * 110.34765 * 356.50341 * 16 15 14 44 44 H 1.08999 * 110.34714 * 118.77604 * 16 15 14 45 45 H 1.08997 * 110.40540 * 142.65208 * 17 16 15 46 46 H 1.09005 * 110.40624 * 265.08308 * 17 16 15 47 47 H 0.97006 * 120.00363 * 179.97438 * 22 21 19 48 48 H 1.09005 * 110.40522 * 280.76369 * 27 18 17 49 49 H 1.08997 * 110.40292 * 158.33898 * 27 18 17 50 50 H 1.09003 * 109.46794 * 30.58640 * 28 10 8 51 51 H 1.08998 * 109.46588 * 150.56399 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1506 0.0052 5 7 4.2498 0.0025 -0.0004 6 6 3.6197 -1.1536 -0.0060 7 6 2.2249 -1.2017 -0.0058 8 6 1.5175 -2.4999 -0.0116 9 8 0.6584 -2.7202 -0.8427 10 7 1.8253 -3.4391 0.9048 11 6 2.8605 -3.1330 1.9109 12 6 2.4595 -3.6218 3.3187 13 6 0.9945 -3.3597 3.5667 14 6 0.1837 -4.5832 3.1491 15 6 -0.1533 -4.6255 1.7180 16 6 -0.9560 -3.3877 1.2677 17 6 -2.2654 -3.9550 0.6781 18 7 -2.4214 -5.2806 1.3212 19 6 -3.5744 -5.8633 1.7752 20 1 -4.4488 -5.2572 1.9615 21 6 -3.6194 -7.2329 1.9963 22 7 -2.5428 -7.9658 1.8068 23 14 -5.2080 -8.0359 2.5627 24 1 -6.2640 -7.0009 2.7011 25 1 -5.6346 -9.0484 1.5637 26 1 -4.9885 -8.6967 3.8744 27 6 -1.0471 -5.8324 1.3619 28 6 1.1317 -4.7069 0.8576 29 1 -0.3634 -0.0671 1.0255 30 1 -0.3633 -0.8545 -0.5709 31 1 -0.3633 0.9216 -0.4546 32 1 1.6966 2.1345 0.0004 33 1 4.1558 2.0762 0.0096 34 1 4.1871 -2.0726 -0.0100 35 1 3.7929 -3.6153 1.6172 36 1 3.0163 -2.0547 1.9415 37 1 3.0524 -3.0949 4.0665 38 1 2.6532 -4.6917 3.3955 39 1 0.6759 -2.4958 2.9833 40 1 0.8348 -3.1620 4.6266 41 1 -0.7426 -4.5974 3.7235 42 1 0.7545 -5.4782 3.3970 43 1 -1.1720 -2.7450 2.1211 44 1 -0.4056 -2.8354 0.5061 45 1 -3.1066 -3.3092 0.9296 46 1 -2.1792 -4.0648 -0.4030 47 1 -2.5741 -8.9229 1.9616 48 1 -0.7705 -6.2360 0.3879 49 1 -0.9694 -6.6025 2.1294 50 1 0.8642 -4.9364 -0.1739 51 1 1.7809 -5.4909 1.2474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045923648.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:01 Heat of formation + Delta-G solvation = 46.216632 kcal Electronic energy + Delta-G solvation = -32416.172536 eV Core-core repulsion = 28509.785911 eV Total energy + Delta-G solvation = -3906.386625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.38881 -39.92436 -37.94002 -36.27921 -34.11487 -33.65195 -32.77060 -31.73525 -30.78766 -28.33111 -28.01913 -27.28884 -25.96689 -24.67343 -24.25148 -23.01541 -22.37947 -21.02932 -20.28606 -19.41886 -17.98612 -17.64941 -16.94192 -16.79268 -16.58579 -16.01180 -15.58687 -14.97197 -14.67787 -14.48995 -14.28152 -14.24563 -13.79427 -13.68719 -13.23544 -13.08012 -12.99921 -12.90391 -12.73079 -12.61004 -12.52013 -12.01278 -11.98267 -11.70302 -11.31003 -11.04703 -10.98516 -10.83815 -10.81121 -10.60537 -10.18731 -10.14404 -9.99871 -9.76376 -9.73670 -9.71514 -9.64300 -9.54125 -9.43618 -9.20367 -8.61020 -8.27879 -6.68620 -5.70289 -3.05891 0.56148 0.93338 2.59029 3.01629 3.40951 3.47310 3.49299 3.50262 4.06220 4.31334 4.44750 4.47112 4.53462 4.65730 4.77810 4.91553 5.11047 5.14364 5.23021 5.28590 5.31124 5.36089 5.45942 5.49969 5.51019 5.61047 5.62019 5.68566 5.80533 5.87083 5.92826 5.95775 6.09579 6.10907 6.16960 6.21945 6.27312 6.29039 6.34043 6.46733 6.63187 6.76539 6.83696 6.85830 7.01168 7.01862 7.24768 7.35958 7.49678 7.60374 7.69206 7.82597 8.16108 8.35880 9.22057 9.84163 10.65494 11.42238 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020277 B = 0.003305 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.560996 B = 8470.843469 C = 9082.199424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.010 3.990 3 C -0.180 4.180 4 C 0.113 3.887 5 N -0.491 5.491 6 C 0.133 3.867 7 C -0.179 4.179 8 C 0.557 3.443 9 O -0.511 6.511 10 N -0.587 5.587 11 C 0.103 3.897 12 C -0.129 4.129 13 C -0.115 4.115 14 C -0.092 4.092 15 C -0.090 4.090 16 C -0.152 4.152 17 C 0.130 3.870 18 N -0.597 5.597 19 C -0.218 4.218 20 H 0.073 0.927 21 C -0.007 4.007 22 N -0.917 5.917 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.292 1.292 27 C 0.169 3.831 28 C 0.124 3.876 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.096 0.904 45 H 0.036 0.964 46 H 0.021 0.979 47 H 0.251 0.749 48 H 0.018 0.982 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.149 16.559 0.555 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.001 3.999 3 C -0.199 4.199 4 C -0.043 4.043 5 N -0.200 5.200 6 C -0.025 4.025 7 C -0.184 4.184 8 C 0.344 3.656 9 O -0.389 6.389 10 N -0.318 5.318 11 C -0.019 4.019 12 C -0.167 4.167 13 C -0.153 4.153 14 C -0.130 4.130 15 C -0.093 4.093 16 C -0.190 4.190 17 C 0.003 3.997 18 N -0.320 5.320 19 C -0.347 4.347 20 H 0.091 0.909 21 C -0.203 4.203 22 N -0.564 5.564 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.219 1.219 27 C 0.043 3.957 28 C 0.002 3.998 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.114 0.886 45 H 0.054 0.946 46 H 0.039 0.961 47 H 0.062 0.938 48 H 0.036 0.964 49 H 0.110 0.890 50 H 0.104 0.896 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.479 16.179 0.204 22.392 hybrid contribution -1.650 -0.481 0.394 1.763 sum 13.829 15.698 0.599 20.929 Atomic orbital electron populations 1.21145 0.89374 1.05070 1.03854 1.20406 0.97320 0.91337 0.90804 1.22041 0.95560 0.98621 1.03715 1.22904 0.91744 0.96382 0.93223 1.67707 1.40713 0.98245 1.13348 1.22981 0.90169 0.96627 0.92746 1.20918 0.95550 0.94616 1.07292 1.18063 0.82367 0.83355 0.81805 1.90737 1.31099 1.79225 1.37793 1.47731 1.39199 1.15480 1.29414 1.22224 0.89947 1.01006 0.88756 1.21828 0.97749 1.02199 0.94954 1.21089 0.94053 0.99657 1.00479 1.20283 1.00003 0.96374 0.96332 1.21254 0.94281 0.99809 0.93923 1.23345 0.98097 0.97069 1.00529 1.21628 0.94585 0.88412 0.95041 1.44912 1.03270 1.15925 1.67931 1.19036 0.89351 0.89965 1.36325 0.90905 1.24927 0.97432 0.95956 1.02016 1.69845 1.26624 1.05248 1.54674 0.86103 0.83000 0.79326 0.77719 1.20507 1.21711 1.21869 1.21640 0.82469 0.92070 0.99545 1.21870 0.93315 0.82750 1.01905 0.90108 0.88262 0.90749 0.84204 0.82421 0.82316 0.91594 0.90440 0.91117 0.91119 0.91924 0.92426 0.91810 0.92751 0.93964 0.88637 0.94588 0.96079 0.93814 0.96446 0.88958 0.89616 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.63 36.00 0.35 -1.15 16 2 C 0.01 0.11 5.95 -103.91 -0.62 -0.51 16 3 C -0.18 -1.53 9.79 -39.49 -0.39 -1.92 16 4 C 0.11 0.97 11.17 -17.47 -0.20 0.77 16 5 N -0.49 -5.16 10.35 -12.91 -0.13 -5.29 16 6 C 0.13 1.40 8.80 -17.13 -0.15 1.25 16 7 C -0.18 -2.13 4.63 -104.82 -0.49 -2.62 16 8 C 0.56 7.94 5.26 -12.33 -0.06 7.87 16 9 O -0.51 -9.03 12.24 5.32 0.07 -8.96 16 10 N -0.59 -7.73 2.03 -173.44 -0.35 -8.08 16 11 C 0.10 1.04 4.89 -2.76 -0.01 1.02 16 12 C -0.13 -1.32 5.71 -27.10 -0.15 -1.48 16 13 C -0.12 -1.49 5.35 -28.00 -0.15 -1.64 16 14 C -0.09 -1.54 3.85 -29.77 -0.11 -1.65 16 15 C -0.09 -1.66 0.67 -155.01 -0.10 -1.76 16 16 C -0.15 -2.88 5.18 -25.34 -0.13 -3.01 16 17 C 0.13 2.94 7.23 -2.40 -0.02 2.92 16 18 N -0.60 -15.68 3.38 -168.86 -0.57 -16.25 16 19 C -0.22 -6.21 10.36 -15.06 -0.16 -6.36 16 20 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 21 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 22 N -0.92 -26.90 10.64 55.49 0.59 -26.31 16 23 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 C 0.17 4.05 5.05 -2.43 -0.01 4.04 16 28 C 0.12 1.96 4.36 -4.08 -0.02 1.94 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.36 5.58 -51.93 -0.29 1.07 16 31 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.16 1.41 7.24 -52.48 -0.38 1.03 16 35 H 0.07 0.54 7.96 -51.93 -0.41 0.13 16 36 H 0.08 0.74 5.29 -51.93 -0.27 0.47 16 37 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.07 0.74 7.32 -51.93 -0.38 0.36 16 39 H 0.06 0.87 6.07 -51.92 -0.32 0.55 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.88 7.38 -51.93 -0.38 0.50 16 43 H 0.04 0.78 6.96 -51.93 -0.36 0.42 16 44 H 0.10 1.72 2.34 -53.41 -0.12 1.59 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 48 H 0.02 0.45 7.48 -51.93 -0.39 0.06 16 49 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 50 H 0.09 1.54 6.90 -51.93 -0.36 1.19 16 51 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -32.57 376.77 -10.02 -42.59 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.75 Total: 1.92 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.52 Total: -2.56 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.47 Total: -55.93 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.07 Total: -8.96 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.57 -10.02 -42.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045923648.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.811 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds