Wall clock time and date at job start Wed Apr 1 2020 02:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38625 * 120.47149 * 2 1 4 4 C 1.38585 * 118.48903 * 179.97438 * 3 2 1 5 5 C 1.38606 * 119.34790 * 359.97438 * 4 3 2 6 6 N 1.31494 * 120.90357 * 359.72786 * 5 4 3 7 7 C 1.32740 * 121.63995 * 0.56131 * 6 5 4 8 8 C 1.48169 * 119.72193 * 179.71327 * 7 6 5 9 9 O 1.21515 * 120.00107 * 103.70753 * 8 7 6 10 10 N 1.35254 * 120.00088 * 283.70448 * 8 7 6 11 11 C 1.43990 * 118.23035 * 174.84924 * 10 8 7 12 12 C 1.54019 * 111.14184 * 268.57392 * 11 10 8 13 13 C 1.46310 * 112.60101 * 295.42883 * 12 11 10 14 14 C 1.52096 * 116.44170 * 57.58561 * 13 12 11 15 15 C 1.50116 * 112.26380 * 277.40950 * 14 13 12 16 16 C 1.53610 * 113.08489 * 322.92848 * 15 14 13 17 17 C 1.55004 * 104.18237 * 230.20106 * 16 15 14 18 18 N 1.48388 * 103.24407 * 32.32353 * 17 16 15 19 19 C 1.36780 * 127.83950 * 136.86534 * 18 17 16 20 20 H 1.07994 * 120.00186 * 345.14741 * 19 18 17 21 21 C 1.38806 * 119.99452 * 165.14663 * 19 18 17 22 22 N 1.31620 * 120.00604 * 351.13686 * 21 19 18 23 23 Si 1.86805 * 120.00027 * 171.13465 * 21 19 18 24 24 H 1.48508 * 109.46964 * 89.99659 * 23 21 19 25 25 H 1.48492 * 109.47358 * 209.99993 * 23 21 19 26 26 H 1.48499 * 109.46998 * 330.00072 * 23 21 19 27 27 C 1.48041 * 104.14077 * 317.01542 * 18 17 16 28 28 C 1.47375 * 118.04529 * 354.27380 * 10 8 7 29 29 H 1.08998 * 109.47274 * 264.69869 * 1 2 3 30 30 H 1.08998 * 109.46808 * 24.69489 * 1 2 3 31 31 H 1.08997 * 109.47553 * 144.69786 * 1 2 3 32 32 H 1.07993 * 120.75681 * 359.95327 * 3 2 1 33 33 H 1.07993 * 120.32722 * 179.97438 * 4 3 2 34 34 H 1.08008 * 119.54450 * 179.97438 * 5 4 3 35 35 H 1.09320 * 109.33524 * 147.62276 * 11 10 8 36 36 H 1.09383 * 109.26893 * 29.27196 * 11 10 8 37 37 H 1.09703 * 108.87900 * 174.51157 * 12 11 10 38 38 H 1.09292 * 109.44476 * 57.11489 * 12 11 10 39 39 H 1.10164 * 107.19911 * 177.87681 * 13 12 11 40 40 H 1.08639 * 108.52137 * 292.30856 * 13 12 11 41 41 H 1.09437 * 109.65216 * 39.31432 * 14 13 12 42 42 H 1.09790 * 108.98198 * 156.78865 * 14 13 12 43 43 H 1.08744 * 111.57861 * 347.60711 * 16 15 14 44 44 H 1.08892 * 110.76937 * 111.82576 * 16 15 14 45 45 H 1.08661 * 110.34331 * 150.64765 * 17 16 15 46 46 H 1.08721 * 110.36971 * 274.18599 * 17 16 15 47 47 H 0.96998 * 120.00586 * 180.02562 * 22 21 19 48 48 H 1.08984 * 110.47353 * 277.98763 * 27 18 17 49 49 H 1.08939 * 110.57126 * 155.31503 * 27 18 17 50 50 H 1.09106 * 108.80127 * 253.92157 * 28 10 8 51 51 H 1.09186 * 108.74018 * 11.88924 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5950 1.1468 0.0005 5 6 4.2321 -0.0841 0.0016 6 7 3.5406 -1.2025 0.0075 7 6 2.2132 -1.2004 0.0015 8 6 1.4766 -2.4860 0.0021 9 8 0.9535 -2.8862 1.0233 10 7 1.3862 -3.2142 -1.1342 11 6 0.7600 -4.5090 -1.0654 12 6 1.7973 -5.6138 -0.7901 13 6 2.7628 -5.7626 -1.8792 14 6 3.5654 -4.5240 -2.2468 15 6 2.8099 -3.6089 -3.1662 16 6 1.9552 -4.3619 -4.1967 17 6 2.3359 -3.7137 -5.5522 18 7 3.7607 -3.3442 -5.3642 19 6 4.7925 -3.5036 -6.2478 20 1 4.6749 -4.1506 -7.1044 21 6 5.9909 -2.8336 -6.0434 22 7 6.0797 -1.9150 -5.1049 23 14 7.4778 -3.2357 -7.1003 24 1 7.4815 -2.3631 -8.3019 25 1 8.7184 -3.0053 -6.3174 26 1 7.4154 -4.6582 -7.5217 27 6 3.8081 -2.7682 -4.0012 28 6 1.9238 -2.6303 -2.3760 29 1 -0.3634 -0.0949 1.0232 30 1 -0.3633 0.9337 -0.4293 31 1 -0.3634 -0.8386 -0.5938 32 1 1.6902 2.1414 -0.0008 33 1 4.1722 2.0596 0.0001 34 1 5.3114 -0.1252 0.0016 35 1 0.2503 -4.7152 -2.0102 36 1 0.0134 -4.5069 -0.2660 37 1 1.2720 -6.5663 -0.6475 38 1 2.3316 -5.3885 0.1363 39 1 3.4793 -6.5421 -1.5751 40 1 2.2427 -6.1497 -2.7510 41 1 3.8412 -3.9810 -1.3375 42 1 4.4949 -4.8346 -2.7416 43 1 2.2060 -5.4195 -4.2281 44 1 0.8943 -4.2180 -3.9976 45 1 2.2292 -4.4341 -6.3587 46 1 1.7325 -2.8270 -5.7304 47 1 6.9170 -1.4466 -4.9624 48 1 3.4934 -1.7249 -4.0172 49 1 4.8095 -2.8587 -3.5820 50 1 1.0904 -2.3180 -3.0072 51 1 2.5147 -1.7481 -2.1216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045931196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:49 Heat of formation + Delta-G solvation = 32.517486 kcal Electronic energy + Delta-G solvation = -32343.715917 eV Core-core repulsion = 28436.735253 eV Total energy + Delta-G solvation = -3906.980664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.01311 -39.62823 -38.28054 -35.86912 -33.81776 -33.71446 -32.84293 -32.00910 -30.92691 -28.40684 -27.78264 -27.02595 -25.69844 -25.31717 -24.14168 -22.81932 -22.25312 -21.22121 -20.25064 -19.29973 -18.05068 -17.49263 -16.81415 -16.70875 -16.45810 -15.84452 -15.14538 -15.03020 -14.63740 -14.33568 -14.25766 -14.01373 -13.68997 -13.50040 -13.34013 -13.13163 -12.90633 -12.86659 -12.77258 -12.65965 -12.34848 -12.16538 -11.81534 -11.74531 -11.52264 -11.21737 -10.96538 -10.83492 -10.68042 -10.39453 -10.24624 -10.18211 -10.01467 -9.87771 -9.81240 -9.78678 -9.62717 -9.49528 -9.33846 -8.91876 -8.65134 -8.43689 -6.82915 -5.77070 -3.09918 0.87813 1.20346 2.51340 3.08518 3.38256 3.44408 3.45858 3.70099 4.19773 4.48594 4.54786 4.68295 4.88464 4.90381 4.94540 5.05925 5.15531 5.23907 5.30468 5.34481 5.40932 5.44876 5.45907 5.53324 5.57395 5.64348 5.73815 5.78613 5.86940 5.91132 5.94953 5.99603 6.00652 6.03100 6.09566 6.25973 6.29823 6.36774 6.39955 6.55243 6.60513 6.64232 6.67593 6.76833 6.86538 6.97309 7.04145 7.36561 7.38882 7.56160 7.74856 7.85963 8.17519 8.22625 9.13843 9.76806 10.55277 11.37168 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010980 B = 0.004388 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.366760 B = 6379.540094 C = 7862.435175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.108 4.108 3 C -0.078 4.078 4 C -0.156 4.156 5 C 0.105 3.895 6 N -0.447 5.447 7 C 0.097 3.903 8 C 0.576 3.424 9 O -0.535 6.535 10 N -0.583 5.583 11 C 0.118 3.882 12 C -0.126 4.126 13 C -0.119 4.119 14 C -0.088 4.088 15 C -0.086 4.086 16 C -0.125 4.125 17 C 0.120 3.880 18 N -0.594 5.594 19 C -0.224 4.224 20 H 0.075 0.925 21 C -0.005 4.005 22 N -0.915 5.915 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.177 3.823 28 C 0.123 3.877 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.163 0.837 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.047 0.953 46 H 0.021 0.979 47 H 0.253 0.747 48 H 0.016 0.984 49 H 0.085 0.915 50 H 0.062 0.938 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.719 2.791 10.247 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.111 4.111 3 C -0.104 4.104 4 C -0.176 4.176 5 C -0.054 4.054 6 N -0.156 5.156 7 C -0.042 4.042 8 C 0.362 3.638 9 O -0.411 6.411 10 N -0.313 5.313 11 C -0.005 4.005 12 C -0.164 4.164 13 C -0.156 4.156 14 C -0.126 4.126 15 C -0.088 4.088 16 C -0.164 4.164 17 C -0.006 4.006 18 N -0.318 5.318 19 C -0.352 4.352 20 H 0.092 0.908 21 C -0.202 4.202 22 N -0.561 5.561 23 Si 0.738 3.262 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.051 3.949 28 C 0.001 3.999 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.181 0.819 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.039 0.961 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.103 0.897 50 H 0.080 0.920 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.316 1.788 10.691 14.964 hybrid contribution 0.605 0.822 -0.647 1.209 sum -9.711 2.610 10.044 14.213 Atomic orbital electron populations 1.20768 0.89924 1.03119 1.03115 1.20765 0.97556 0.92816 0.99924 1.21424 0.94212 0.97711 0.97020 1.22319 0.95176 0.99900 1.00209 1.22861 1.00655 0.87148 0.94775 1.67677 1.06206 1.31770 1.09983 1.20856 0.90618 0.93209 0.99554 1.18219 0.79143 0.82828 0.83635 1.90750 1.47322 1.70778 1.32225 1.47547 1.57907 1.17158 1.08737 1.21190 0.95045 0.81623 1.02660 1.20914 0.97773 0.98181 0.99540 1.20240 0.98067 0.98561 0.98751 1.20759 0.98135 0.94831 0.98869 1.21494 0.96288 0.96175 0.94891 1.22758 0.97126 0.99989 0.96547 1.21863 0.87613 0.96284 0.94863 1.44882 1.01854 1.72180 1.12860 1.18931 0.90719 1.21250 1.04322 0.90771 1.24844 0.98737 0.97348 0.99265 1.69897 1.25480 1.26029 1.34703 0.86194 0.82583 0.77917 0.79500 1.21586 1.21621 1.20644 1.21683 0.97214 0.92050 0.83986 1.22363 0.97086 0.96539 0.83916 0.90313 0.90849 0.91331 0.84382 0.84314 0.81940 0.90623 0.90080 0.91548 0.92313 0.93462 0.91695 0.92108 0.91505 0.91405 0.92822 0.93407 0.96120 0.93709 0.96654 0.89716 0.92021 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.54 36.01 0.34 -0.83 16 2 C -0.11 -1.39 5.93 -104.09 -0.62 -2.00 16 3 C -0.08 -0.84 9.83 -39.31 -0.39 -1.22 16 4 C -0.16 -1.70 10.12 -39.32 -0.40 -2.10 16 5 C 0.10 1.39 11.18 -17.56 -0.20 1.20 16 6 N -0.45 -7.26 9.85 -9.79 -0.10 -7.35 16 7 C 0.10 1.52 4.44 -83.01 -0.37 1.15 16 8 C 0.58 9.45 5.81 -11.97 -0.07 9.38 16 9 O -0.53 -9.82 16.44 5.35 0.09 -9.74 16 10 N -0.58 -8.79 2.25 -174.17 -0.39 -9.18 16 11 C 0.12 1.57 5.39 -4.84 -0.03 1.55 16 12 C -0.13 -1.67 5.71 -29.38 -0.17 -1.84 16 13 C -0.12 -1.73 4.80 -30.37 -0.15 -1.88 16 14 C -0.09 -1.56 4.32 -28.63 -0.12 -1.68 16 15 C -0.09 -1.54 0.63 -154.16 -0.10 -1.63 16 16 C -0.13 -2.10 4.94 -25.36 -0.13 -2.22 16 17 C 0.12 2.41 7.29 -1.94 -0.01 2.40 16 18 N -0.59 -14.71 3.36 -168.37 -0.57 -15.27 16 19 C -0.22 -6.11 10.35 -15.13 -0.16 -6.26 16 20 H 0.07 1.97 7.84 -52.49 -0.41 1.56 16 21 C 0.00 -0.14 5.41 -17.43 -0.09 -0.23 16 22 N -0.91 -26.23 10.91 55.49 0.61 -25.63 16 23 Si 0.91 21.73 29.56 -169.99 -5.03 16.71 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.18 4.08 4.74 -2.18 -0.01 4.07 16 28 C 0.12 1.98 4.81 -3.11 -0.01 1.97 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 31 H 0.07 0.77 7.29 -51.93 -0.38 0.39 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.16 1.84 8.06 -52.48 -0.42 1.41 16 35 H 0.08 0.90 7.05 -51.75 -0.36 0.54 16 36 H 0.08 1.08 7.16 -51.71 -0.37 0.71 16 37 H 0.07 0.74 8.20 -51.53 -0.42 0.32 16 38 H 0.06 0.88 8.17 -51.76 -0.42 0.46 16 39 H 0.05 0.67 8.21 -51.27 -0.42 0.25 16 40 H 0.06 0.92 5.48 -52.13 -0.29 0.63 16 41 H 0.06 1.14 7.77 -51.68 -0.40 0.74 16 42 H 0.07 1.35 7.70 -51.48 -0.40 0.95 16 43 H 0.07 1.13 5.96 -52.07 -0.31 0.82 16 44 H 0.05 0.77 6.62 -51.99 -0.34 0.43 16 45 H 0.05 0.92 8.11 -52.12 -0.42 0.50 16 46 H 0.02 0.42 8.12 -52.09 -0.42 -0.01 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.02 0.38 7.41 -51.94 -0.38 0.00 16 49 H 0.08 2.23 6.04 -51.96 -0.31 1.92 16 50 H 0.06 0.93 7.59 -51.87 -0.39 0.54 16 51 H 0.08 1.41 5.13 -51.82 -0.27 1.14 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -32.07 387.49 -10.19 -42.27 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.98 Total: 2.55 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.67 Total: -0.19 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.45 Total: -57.43 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.07 -10.19 -42.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045931196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.784 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds