Wall clock time and date at job start Wed Apr 1 2020 02:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31696 * 119.71589 * 2 1 4 4 C 1.31928 * 121.88026 * 179.97438 * 3 2 1 5 5 C 1.38360 * 121.07748 * 0.02562 * 4 3 2 6 6 C 1.38354 * 119.30137 * 359.74750 * 5 4 3 7 7 C 1.39525 * 119.71653 * 180.02562 * 2 1 3 8 8 C 1.47838 * 120.55917 * 359.97438 * 7 2 1 9 9 O 1.21554 * 120.00074 * 305.01700 * 8 7 2 10 10 N 1.34777 * 119.99948 * 125.01400 * 8 7 2 11 11 C 1.44570 * 118.78268 * 354.37625 * 10 8 7 12 12 C 1.54692 * 109.62080 * 270.60223 * 11 10 8 13 13 C 1.47029 * 110.64825 * 288.17141 * 12 11 10 14 14 C 1.53019 * 114.31483 * 62.90304 * 13 12 11 15 15 C 1.50548 * 109.10276 * 276.11913 * 14 13 12 16 16 C 1.53947 * 111.51357 * 214.31470 * 15 14 13 17 17 C 1.54149 * 104.89910 * 98.52294 * 16 15 14 18 18 N 1.47536 * 107.06884 * 358.26209 * 17 16 15 19 19 C 1.36937 * 126.98316 * 205.30910 * 18 17 16 20 20 H 1.07997 * 119.99542 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00008 * 359.97438 * 19 18 17 22 22 N 1.31616 * 120.00095 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99827 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47027 * 60.00186 * 23 21 19 25 25 H 1.48498 * 109.46959 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.46786 * 299.99932 * 23 21 19 27 27 C 1.48221 * 106.02937 * 25.27389 * 18 17 16 28 28 C 1.47591 * 118.78186 * 174.35340 * 10 8 7 29 29 H 1.09001 * 109.47402 * 274.91660 * 1 2 3 30 30 H 1.08996 * 109.47229 * 34.91584 * 1 2 3 31 31 H 1.09001 * 109.47317 * 154.91537 * 1 2 3 32 32 H 1.07990 * 119.46222 * 179.97438 * 4 3 2 33 33 H 1.07998 * 120.34828 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.85452 * 180.24826 * 6 5 4 35 35 H 1.08998 * 109.44932 * 30.65084 * 11 10 8 36 36 H 1.09004 * 109.44012 * 150.55944 * 11 10 8 37 37 H 1.08994 * 109.23860 * 48.47122 * 12 11 10 38 38 H 1.08995 * 109.23773 * 167.87685 * 12 11 10 39 39 H 1.08998 * 108.51359 * 184.15338 * 13 12 11 40 40 H 1.09001 * 108.51522 * 301.81158 * 13 12 11 41 41 H 1.09001 * 109.53185 * 156.23095 * 14 13 12 42 42 H 1.09001 * 109.53249 * 36.00751 * 14 13 12 43 43 H 1.08997 * 110.35614 * 339.66796 * 16 15 14 44 44 H 1.08997 * 110.35638 * 217.37692 * 16 15 14 45 45 H 1.08993 * 109.91920 * 117.61806 * 17 16 15 46 46 H 1.09005 * 109.91340 * 238.90807 * 17 16 15 47 47 H 0.96999 * 119.99854 * 180.02562 * 22 21 19 48 48 H 1.08995 * 110.66112 * 79.88891 * 27 18 17 49 49 H 1.08998 * 110.66564 * 203.01431 * 27 18 17 50 50 H 1.09000 * 108.98973 * 17.46309 * 28 10 8 51 51 H 1.09004 * 108.98739 * 258.72899 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 0.0005 5 6 4.2366 0.0364 0.0005 6 6 3.5987 -1.1913 0.0053 7 6 2.1986 -1.2118 -0.0005 8 6 1.4656 -2.4956 -0.0005 9 8 0.6400 -2.7241 0.8618 10 7 1.7127 -3.4127 -0.9568 11 6 2.6074 -3.0668 -2.0384 12 6 1.8024 -2.4266 -3.1939 13 6 0.9894 -3.4397 -3.8828 14 6 -0.0780 -4.0952 -3.0040 15 6 0.5483 -5.2212 -2.2253 16 6 -0.4383 -6.3857 -2.0243 17 6 -0.0729 -7.4081 -3.1186 18 7 1.0260 -6.8219 -3.9094 19 6 1.3467 -7.1048 -5.2103 20 1 2.1800 -6.6052 -5.6818 21 6 0.6008 -8.0337 -5.9228 22 7 -0.4151 -8.6421 -5.3482 23 14 1.0388 -8.4201 -7.6972 24 1 2.4252 -8.9484 -7.7610 25 1 0.0962 -9.4366 -8.2296 26 1 0.9427 -7.1821 -8.5116 27 6 1.7116 -5.8638 -3.0100 28 6 1.0602 -4.7330 -0.8607 29 1 -0.3634 0.0881 1.0239 30 1 -0.3633 0.8426 -0.5882 31 1 -0.3634 -0.9307 -0.4357 32 1 3.9734 2.1532 0.0001 33 1 5.3152 0.0909 0.0005 34 1 4.1660 -2.1103 0.0095 35 1 3.3535 -2.3578 -1.6796 36 1 3.1061 -3.9666 -2.3986 37 1 1.1477 -1.6542 -2.7906 38 1 2.4932 -1.9755 -3.9061 39 1 0.4962 -2.9681 -4.7328 40 1 1.6526 -4.2193 -4.2576 41 1 -0.8773 -4.4873 -3.6329 42 1 -0.4853 -3.3568 -2.3133 43 1 -1.4639 -6.0407 -2.1552 44 1 -0.3088 -6.8260 -1.0357 45 1 0.2560 -8.3408 -2.6604 46 1 -0.9356 -7.5902 -3.7595 47 1 -0.9361 -9.2914 -5.8460 48 1 2.3884 -6.3871 -2.3347 49 1 2.2484 -5.1110 -3.5873 50 1 0.2194 -4.6638 -0.1706 51 1 1.7777 -5.4557 -0.4718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045960239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:23 Heat of formation + Delta-G solvation = 51.442229 kcal Electronic energy + Delta-G solvation = -31994.581788 eV Core-core repulsion = 28088.421762 eV Total energy + Delta-G solvation = -3906.160026 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.29479 -39.99059 -38.43805 -36.10702 -33.79120 -33.25318 -33.17816 -32.47813 -30.54479 -28.79020 -28.13324 -27.14160 -25.82689 -24.97888 -24.59734 -22.91964 -22.41328 -21.54708 -19.94488 -19.43193 -18.09089 -17.35662 -17.18138 -16.84674 -16.52308 -16.40027 -15.35398 -15.24519 -14.74141 -14.64111 -14.13990 -14.02087 -13.90189 -13.57220 -13.52211 -13.15419 -13.11727 -12.93263 -12.65409 -12.53952 -12.36969 -12.16626 -11.93667 -11.78449 -11.75046 -11.39465 -11.05247 -10.86164 -10.83168 -10.48614 -10.33674 -10.21113 -10.15849 -9.98548 -9.82931 -9.70821 -9.58249 -9.55025 -9.25276 -9.20167 -8.67865 -8.54421 -6.87360 -5.66911 -3.07648 0.55732 0.88828 2.52722 2.94913 3.37932 3.42405 3.43891 3.46534 3.98117 4.28651 4.43338 4.46730 4.49131 4.74359 4.84996 4.92474 5.01741 5.13013 5.15733 5.24688 5.27892 5.37414 5.45450 5.49553 5.51465 5.56378 5.69024 5.69630 5.72966 5.81583 5.83199 5.88510 5.92328 6.02749 6.05092 6.15219 6.26138 6.27850 6.31793 6.38533 6.42609 6.52586 6.66705 6.69804 6.87367 6.95312 7.00302 7.33981 7.50638 7.56733 7.64112 7.83772 8.06269 8.34215 9.18020 9.79623 10.50075 11.37737 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.003033 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.135291 B = 9229.499851 C = 9757.768418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.175 3.825 3 N -0.486 5.486 4 C 0.118 3.882 5 C -0.184 4.184 6 C -0.043 4.043 7 C -0.171 4.171 8 C 0.560 3.440 9 O -0.532 6.532 10 N -0.588 5.588 11 C 0.094 3.906 12 C -0.126 4.126 13 C -0.144 4.144 14 C -0.081 4.081 15 C -0.082 4.082 16 C -0.129 4.129 17 C 0.147 3.853 18 N -0.596 5.596 19 C -0.220 4.220 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.120 3.880 28 C 0.125 3.875 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.159 0.841 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.009 0.991 46 H 0.104 0.896 47 H 0.252 0.748 48 H 0.017 0.983 49 H 0.071 0.929 50 H 0.088 0.912 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.550 16.940 9.904 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.037 3.963 3 N -0.195 5.195 4 C -0.040 4.040 5 C -0.204 4.204 6 C -0.070 4.070 7 C -0.177 4.177 8 C 0.347 3.653 9 O -0.409 6.409 10 N -0.319 5.319 11 C -0.030 4.030 12 C -0.165 4.165 13 C -0.181 4.181 14 C -0.118 4.118 15 C -0.084 4.084 16 C -0.168 4.168 17 C 0.022 3.978 18 N -0.320 5.320 19 C -0.348 4.348 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.006 4.006 28 C 0.003 3.997 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.177 0.823 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.027 0.973 46 H 0.122 0.878 47 H 0.063 0.937 48 H 0.035 0.965 49 H 0.088 0.912 50 H 0.106 0.894 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.561 17.381 10.119 21.155 hybrid contribution 0.927 -1.086 -0.929 1.703 sum 7.488 16.295 9.190 20.151 Atomic orbital electron populations 1.20790 0.88100 1.03597 1.03857 1.21347 0.97194 0.86635 0.91085 1.67581 1.10049 1.28560 1.13359 1.22922 0.89361 0.98723 0.92948 1.22062 1.01749 0.92991 1.03582 1.21683 0.92826 0.99077 0.93372 1.20814 0.94772 0.95097 1.06972 1.18159 0.82127 0.83019 0.82025 1.90786 1.33628 1.78673 1.37854 1.47637 1.46070 1.14423 1.23728 1.21959 0.92130 1.01403 0.87499 1.21165 0.99210 0.98657 0.97451 1.20861 0.99172 0.99302 0.98745 1.20813 0.97775 0.95723 0.97510 1.21439 0.98007 0.95639 0.93344 1.22715 0.97754 0.96415 0.99952 1.21685 0.94353 0.91060 0.90710 1.44754 1.32421 1.46029 1.08807 1.18966 1.11199 1.18833 0.85781 0.90604 1.24759 0.98227 0.99166 0.98397 1.69765 1.20989 1.30591 1.35514 0.86211 0.77395 0.77717 0.84516 1.21291 1.21634 1.21210 1.22417 0.93054 0.92477 0.92604 1.22119 0.97754 0.81391 0.98424 0.89571 0.90289 0.90414 0.82347 0.84139 0.84102 0.90425 0.89260 0.92674 0.91321 0.92863 0.88531 0.91300 0.93310 0.92245 0.92893 0.97339 0.87834 0.93709 0.96501 0.91171 0.89356 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.47 36.00 0.34 -0.86 16 2 C 0.18 2.11 6.82 -82.17 -0.56 1.55 16 3 N -0.49 -5.51 10.26 -9.14 -0.09 -5.60 16 4 C 0.12 1.00 11.17 -17.47 -0.20 0.80 16 5 C -0.18 -1.37 10.10 -39.49 -0.40 -1.77 16 6 C -0.04 -0.40 7.65 -38.87 -0.30 -0.70 16 7 C -0.17 -2.03 4.89 -104.82 -0.51 -2.54 16 8 C 0.56 7.77 6.00 -12.33 -0.07 7.70 16 9 O -0.53 -8.97 15.32 5.32 0.08 -8.88 16 10 N -0.59 -7.70 2.30 -173.93 -0.40 -8.10 16 11 C 0.09 1.06 5.15 -4.18 -0.02 1.04 16 12 C -0.13 -1.52 5.71 -28.70 -0.16 -1.68 16 13 C -0.14 -2.15 5.02 -29.59 -0.15 -2.29 16 14 C -0.08 -1.32 4.89 -27.95 -0.14 -1.45 16 15 C -0.08 -1.36 0.57 -154.17 -0.09 -1.45 16 16 C -0.13 -2.39 5.91 -25.64 -0.15 -2.54 16 17 C 0.15 3.46 6.01 -2.87 -0.02 3.45 16 18 N -0.60 -14.30 3.36 -169.48 -0.57 -14.87 16 19 C -0.22 -5.81 10.37 -15.06 -0.16 -5.96 16 20 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -26.32 10.21 55.49 0.57 -25.75 16 23 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.12 2.27 4.52 -2.39 -0.01 2.26 16 28 C 0.12 1.83 4.83 -3.08 -0.01 1.82 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.97 6.59 -51.93 -0.34 0.62 16 32 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.14 1.06 7.50 -52.48 -0.39 0.66 16 35 H 0.08 0.73 4.25 -51.93 -0.22 0.51 16 36 H 0.09 1.04 5.78 -51.93 -0.30 0.74 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.63 4.42 -51.93 -0.23 1.40 16 41 H 0.07 1.28 7.69 -51.93 -0.40 0.88 16 42 H 0.05 0.77 7.58 -51.93 -0.39 0.37 16 43 H 0.06 1.07 7.71 -51.93 -0.40 0.67 16 44 H 0.05 0.90 7.78 -51.93 -0.40 0.49 16 45 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 46 H 0.10 2.77 5.87 -51.93 -0.30 2.46 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.02 0.33 7.65 -51.93 -0.40 -0.07 16 49 H 0.07 1.25 3.44 -51.93 -0.18 1.07 16 50 H 0.09 1.39 6.83 -51.93 -0.35 1.03 16 51 H 0.06 0.93 7.63 -51.93 -0.40 0.53 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -31.14 378.72 -10.08 -41.22 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.64 Total: 2.75 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.70 Total: -3.00 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.50 Total: -54.32 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.14 -10.08 -41.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045960239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.663 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds