Wall clock time and date at job start Wed Apr 1 2020 02:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38174 * 119.54767 * 2 1 4 4 C 1.39801 * 118.99713 * 180.02562 * 3 2 1 5 5 C 1.48144 * 120.92036 * 180.02562 * 4 3 2 6 6 O 1.21515 * 120.00315 * 23.98231 * 5 4 3 7 7 N 1.34777 * 119.99937 * 203.97745 * 5 4 3 8 8 C 1.44568 * 118.72715 * 355.50278 * 7 5 4 9 9 C 1.54757 * 109.57821 * 270.64185 * 8 7 5 10 10 C 1.47055 * 110.56016 * 288.35049 * 9 8 7 11 11 C 1.52839 * 114.34011 * 62.91846 * 10 9 8 12 12 C 1.50701 * 109.20493 * 275.77140 * 11 10 9 13 13 C 1.53926 * 111.04243 * 213.26958 * 12 11 10 14 14 C 1.54479 * 104.84196 * 119.99764 * 13 12 11 15 15 N 1.48179 * 104.62691 * 23.82574 * 14 13 12 16 16 C 1.36935 * 127.80885 * 140.69376 * 15 14 13 17 17 H 1.08006 * 119.99934 * 196.44883 * 16 15 14 18 18 C 1.38807 * 120.00166 * 16.43480 * 16 15 14 19 19 N 1.31627 * 119.99819 * 9.07410 * 18 16 15 20 20 Si 1.86800 * 120.00194 * 189.06350 * 18 16 15 21 21 H 1.48502 * 109.46670 * 90.00745 * 20 18 16 22 22 H 1.48507 * 109.47179 * 210.00392 * 20 18 16 23 23 H 1.48498 * 109.47290 * 330.00661 * 20 18 16 24 24 C 1.48228 * 104.38592 * 320.65434 * 15 14 13 25 25 C 1.47609 * 118.72177 * 175.23705 * 7 5 4 26 26 C 1.39834 * 118.15469 * 359.75592 * 4 3 2 27 27 C 1.38123 * 119.00616 * 0.48802 * 26 4 3 28 28 N 1.31795 * 119.55577 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.46906 * 269.97514 * 1 2 3 30 30 H 1.09001 * 109.47246 * 29.97865 * 1 2 3 31 31 H 1.09000 * 109.46958 * 149.97525 * 1 2 3 32 32 H 1.08003 * 120.50310 * 0.04430 * 3 2 1 33 33 H 1.09000 * 109.45109 * 30.67459 * 8 7 5 34 34 H 1.09003 * 109.45458 * 150.62920 * 8 7 5 35 35 H 1.09001 * 109.25312 * 48.62598 * 9 8 7 36 36 H 1.08997 * 109.25551 * 168.06695 * 9 8 7 37 37 H 1.08999 * 108.51370 * 184.17227 * 10 9 8 38 38 H 1.09002 * 108.51368 * 301.65558 * 10 9 8 39 39 H 1.08999 * 109.51361 * 35.69312 * 11 10 9 40 40 H 1.08999 * 109.51773 * 155.85875 * 11 10 9 41 41 H 1.08998 * 110.36742 * 238.84408 * 13 12 11 42 42 H 1.09007 * 110.36280 * 1.16457 * 13 12 11 43 43 H 1.09000 * 110.40539 * 142.60852 * 14 13 12 44 44 H 1.08992 * 110.40969 * 264.91773 * 14 13 12 45 45 H 0.96997 * 119.99814 * 179.97438 * 19 18 16 46 46 H 1.09002 * 110.41563 * 280.44592 * 24 15 14 47 47 H 1.09003 * 110.41841 * 157.98652 * 24 15 14 48 48 H 1.08998 * 108.96845 * 258.63509 * 25 7 5 49 49 H 1.09000 * 108.97409 * 17.32405 * 25 7 5 50 50 H 1.08004 * 120.49788 * 180.23905 * 26 4 3 51 51 H 1.07995 * 119.55625 * 179.77804 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5864 1.1886 -0.0005 5 6 4.3598 2.4521 0.0000 6 8 3.8571 3.4721 0.4286 7 7 5.6210 2.4704 -0.4748 8 6 6.2267 1.2239 -0.8864 9 6 6.9417 0.5713 0.3210 10 6 8.1584 1.3209 0.6677 11 6 7.9051 2.7594 1.1179 12 6 7.7937 3.6463 -0.0953 13 6 8.3501 5.0519 0.1946 14 6 9.5024 5.2378 -0.8173 15 7 9.1784 4.3117 -1.9277 16 6 9.3342 4.5251 -3.2713 17 1 8.8234 3.8916 -3.9815 18 6 10.1482 5.5557 -3.7207 19 7 10.9083 6.2125 -2.8701 20 14 10.1653 6.0103 -5.5324 21 1 9.1331 7.0457 -5.7926 22 1 11.5031 6.5425 -5.8966 23 1 9.8735 4.8043 -6.3482 24 6 8.6485 3.1016 -1.2553 25 6 6.3282 3.7633 -0.5600 26 6 4.2343 -0.0506 0.0042 27 6 3.4742 -1.2038 -0.0011 28 7 2.1571 -1.1465 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6492 2.1378 0.0007 33 1 5.4545 0.5506 -1.2584 34 1 6.9521 1.4164 -1.6769 35 1 6.2674 0.5644 1.1773 36 1 7.2110 -0.4542 0.0679 37 1 8.6735 0.7928 1.4701 38 1 8.8126 1.3412 -0.2040 39 1 6.9774 2.8043 1.6884 40 1 8.7333 3.0971 1.7409 41 1 7.5791 5.8055 0.0342 42 1 8.7290 5.1068 1.2152 43 1 9.5305 6.2666 -1.1765 44 1 10.4554 4.9691 -0.3617 45 1 11.4774 6.9325 -3.1841 46 1 9.4659 2.4912 -0.8714 47 1 8.0317 2.5235 -1.9434 48 1 6.3067 4.1115 -1.5926 49 1 5.8141 4.4905 0.0684 50 1 5.3130 -0.1051 0.0078 51 1 3.9654 -2.1656 -0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045974886.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:31 Heat of formation + Delta-G solvation = 77.595770 kcal Electronic energy + Delta-G solvation = -31596.735137 eV Core-core repulsion = 27691.709214 eV Total energy + Delta-G solvation = -3905.025923 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.50215 -39.96258 -38.46363 -36.53564 -34.05914 -33.54164 -32.76881 -32.47916 -30.71837 -28.90932 -27.94526 -27.24316 -26.18984 -25.14781 -24.42444 -23.09610 -22.39511 -21.78813 -20.11684 -19.26596 -18.25257 -17.49276 -17.17999 -16.77061 -16.41457 -15.66777 -15.49863 -15.42782 -14.81010 -14.71278 -14.45483 -14.35183 -13.98984 -13.84441 -13.67763 -13.34055 -13.06576 -12.81892 -12.63411 -12.56124 -12.50297 -12.13942 -11.69670 -11.67649 -11.60354 -11.28881 -11.00254 -10.94108 -10.82881 -10.69887 -10.49471 -10.32786 -10.09444 -10.05695 -9.99826 -9.73000 -9.65689 -9.61736 -9.46478 -9.12614 -8.64594 -8.56951 -6.84560 -5.80974 -3.15657 0.56825 0.81979 2.73177 2.91606 3.36093 3.41673 3.43224 3.55888 4.00390 4.17468 4.44098 4.45740 4.54984 4.69393 4.76576 4.80817 4.93384 5.00890 5.17371 5.20205 5.22812 5.30401 5.30492 5.43419 5.44547 5.46576 5.53107 5.61202 5.66617 5.69619 5.75723 5.82131 5.85285 5.87690 6.04761 6.08631 6.14713 6.23414 6.27696 6.34980 6.36969 6.42526 6.48366 6.61585 6.69473 6.82076 6.88206 7.34587 7.36231 7.54063 7.67969 7.70931 8.06483 8.20613 9.09319 9.72691 10.50336 11.32842 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.002954 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.784951 B = 9477.839045 C = 9946.824622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.119 3.881 3 C -0.118 4.118 4 C -0.078 4.078 5 C 0.549 3.451 6 O -0.535 6.535 7 N -0.584 5.584 8 C 0.069 3.931 9 C -0.143 4.143 10 C -0.139 4.139 11 C -0.095 4.095 12 C -0.083 4.083 13 C -0.132 4.132 14 C 0.158 3.842 15 N -0.595 5.595 16 C -0.227 4.227 17 H 0.074 0.926 18 C -0.004 4.004 19 N -0.913 5.913 20 Si 0.909 3.091 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.130 3.870 25 C 0.128 3.872 26 C -0.192 4.192 27 C 0.096 3.904 28 N -0.474 5.474 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.020 0.980 45 H 0.254 0.746 46 H 0.033 0.967 47 H 0.048 0.952 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.186 0.814 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.500 -14.174 8.215 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.018 4.018 3 C -0.139 4.139 4 C -0.089 4.089 5 C 0.337 3.663 6 O -0.412 6.412 7 N -0.314 5.314 8 C -0.054 4.054 9 C -0.181 4.181 10 C -0.176 4.176 11 C -0.133 4.133 12 C -0.085 4.085 13 C -0.172 4.172 14 C 0.032 3.968 15 N -0.319 5.319 16 C -0.355 4.355 17 H 0.091 0.909 18 C -0.201 4.201 19 N -0.560 5.560 20 Si 0.739 3.261 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.004 3.996 25 C 0.008 3.992 26 C -0.211 4.211 27 C -0.061 4.061 28 N -0.185 5.185 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.038 0.962 45 H 0.064 0.936 46 H 0.050 0.950 47 H 0.066 0.934 48 H 0.094 0.906 49 H 0.104 0.896 50 H 0.202 0.798 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.058 -14.212 8.215 21.612 hybrid contribution 0.698 1.012 -0.884 1.515 sum -13.360 -13.200 7.330 20.161 Atomic orbital electron populations 1.20721 0.88417 1.03645 1.03263 1.21269 0.97231 0.87835 0.95469 1.22093 0.93300 0.99993 0.98518 1.20387 0.94370 0.93946 1.00180 1.18330 0.81925 0.87760 0.78293 1.90764 1.69697 1.34204 1.46565 1.47603 1.12924 1.09004 1.61880 1.22659 0.99090 0.85845 0.97823 1.21366 0.98482 0.99768 0.98455 1.20751 0.97925 0.95819 1.03088 1.21095 1.01358 0.94021 0.96827 1.21462 0.93819 0.97010 0.96219 1.22834 1.00244 0.94319 0.99767 1.21523 0.91909 0.97263 0.86106 1.44998 1.74267 1.10988 1.01621 1.18940 1.22188 1.14001 0.80396 0.90860 1.24889 0.97277 1.00205 0.97762 1.69910 1.28106 1.24956 1.32984 0.86173 0.76965 0.78389 0.84536 1.21519 1.21695 1.20600 1.22159 0.94815 0.90655 0.91963 1.22236 0.91705 0.82675 1.02617 1.24061 1.05136 0.92447 0.99411 1.22788 0.89131 0.98511 0.95667 1.67361 1.10537 1.29463 1.11113 0.90268 0.90509 0.90316 0.83855 0.88607 0.88475 0.91413 0.90214 0.92517 0.89452 0.92559 0.91631 0.92368 0.92372 0.89939 0.96223 0.93623 0.95017 0.93362 0.90649 0.89552 0.79811 0.82159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.17 36.01 0.37 -0.40 16 2 C 0.12 1.26 6.78 -82.63 -0.56 0.70 16 3 C -0.12 -1.37 9.32 -39.02 -0.36 -1.74 16 4 C -0.08 -0.96 5.63 -104.65 -0.59 -1.55 16 5 C 0.55 8.17 7.51 -12.19 -0.09 8.07 16 6 O -0.53 -9.66 15.96 5.35 0.09 -9.57 16 7 N -0.58 -8.12 2.27 -173.47 -0.39 -8.52 16 8 C 0.07 0.76 4.82 -4.15 -0.02 0.74 16 9 C -0.14 -1.34 3.95 -28.66 -0.11 -1.45 16 10 C -0.14 -1.58 4.94 -29.67 -0.15 -1.73 16 11 C -0.10 -1.30 4.90 -27.97 -0.14 -1.43 16 12 C -0.08 -1.34 0.68 -154.02 -0.11 -1.45 16 13 C -0.13 -2.41 6.21 -25.47 -0.16 -2.56 16 14 C 0.16 3.64 5.88 -2.34 -0.01 3.63 16 15 N -0.60 -14.33 3.38 -168.93 -0.57 -14.90 16 16 C -0.23 -6.07 10.35 -15.06 -0.16 -6.22 16 17 H 0.07 1.90 7.85 -52.48 -0.41 1.49 16 18 C 0.00 -0.11 5.40 -17.43 -0.09 -0.20 16 19 N -0.91 -26.29 10.92 55.49 0.61 -25.68 16 20 Si 0.91 21.61 29.56 -169.99 -5.03 16.59 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.13 2.43 4.42 -2.55 -0.01 2.42 16 25 C 0.13 2.09 4.74 -2.82 -0.01 2.08 16 26 C -0.19 -1.89 7.03 -39.03 -0.27 -2.16 16 27 C 0.10 0.90 11.17 -17.59 -0.20 0.70 16 28 N -0.47 -5.23 10.25 -9.52 -0.10 -5.32 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.14 1.59 7.92 -52.48 -0.42 1.18 16 33 H 0.10 0.92 4.54 -51.93 -0.24 0.68 16 34 H 0.10 1.17 5.12 -51.93 -0.27 0.91 16 35 H 0.07 0.65 6.95 -51.93 -0.36 0.29 16 36 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.11 4.58 -51.93 -0.24 0.87 16 39 H 0.06 0.79 7.56 -51.93 -0.39 0.39 16 40 H 0.07 0.89 7.42 -51.93 -0.39 0.51 16 41 H 0.06 1.06 7.50 -51.93 -0.39 0.67 16 42 H 0.06 0.95 7.35 -51.93 -0.38 0.57 16 43 H 0.08 2.16 6.59 -51.93 -0.34 1.82 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.03 0.60 5.94 -51.93 -0.31 0.30 16 47 H 0.05 0.86 5.07 -51.93 -0.26 0.60 16 48 H 0.08 1.39 7.96 -51.93 -0.41 0.97 16 49 H 0.09 1.50 6.61 -51.93 -0.34 1.16 16 50 H 0.19 1.52 2.02 -53.47 -0.11 1.42 16 51 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -31.94 373.56 -9.79 -41.72 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.34 Total: 2.60 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.68 Total: -2.55 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.46 Total: -54.42 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.94 -9.79 -41.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045974886.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.317 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds