Wall clock time and date at job start Wed Apr 1 2020 02:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38169 * 119.55048 * 2 1 4 4 C 1.39801 * 118.99992 * 180.30077 * 3 2 1 5 5 C 1.48148 * 120.92441 * 179.69505 * 4 3 2 6 6 O 1.21516 * 119.99850 * 33.93271 * 5 4 3 7 7 N 1.35120 * 119.99647 * 213.93233 * 5 4 3 8 8 C 1.44422 * 118.20619 * 354.47180 * 7 5 4 9 9 C 1.54642 * 109.64185 * 269.53813 * 8 7 5 10 10 C 1.47175 * 110.16631 * 290.32464 * 9 8 7 11 11 C 1.52364 * 114.89146 * 64.57044 * 10 9 8 12 12 C 1.50293 * 111.52737 * 273.81329 * 11 10 9 13 13 C 1.53813 * 112.23306 * 321.49808 * 12 11 10 14 14 C 1.54848 * 103.73256 * 225.18809 * 13 12 11 15 15 N 1.48257 * 103.03160 * 35.32414 * 14 13 12 16 16 C 1.37022 * 127.61536 * 137.64977 * 15 14 13 17 17 H 1.08009 * 119.99713 * 348.56552 * 16 15 14 18 18 C 1.38805 * 120.00337 * 168.56819 * 16 15 14 19 19 N 1.31615 * 119.99995 * 350.14874 * 18 16 15 20 20 Si 1.86806 * 120.00089 * 170.15163 * 18 16 15 21 21 H 1.48499 * 109.46947 * 90.00081 * 20 18 16 22 22 H 1.48500 * 109.46981 * 209.99568 * 20 18 16 23 23 H 1.48494 * 109.46976 * 329.99737 * 20 18 16 24 24 C 1.47908 * 104.57228 * 317.52636 * 15 14 13 25 25 C 1.47239 * 118.50509 * 173.75433 * 7 5 4 26 26 C 1.39847 * 118.15097 * 359.47504 * 4 3 2 27 27 C 1.38123 * 119.00116 * 0.49744 * 26 4 3 28 28 N 1.31795 * 119.55221 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47120 * 90.00343 * 1 2 3 30 30 H 1.09002 * 109.47464 * 210.00925 * 1 2 3 31 31 H 1.09006 * 109.46999 * 330.00321 * 1 2 3 32 32 H 1.07998 * 120.50304 * 0.02562 * 3 2 1 33 33 H 1.09023 * 109.67263 * 29.80799 * 8 7 5 34 34 H 1.09008 * 109.46462 * 149.27729 * 8 7 5 35 35 H 1.08866 * 109.67281 * 50.68618 * 9 8 7 36 36 H 1.09064 * 109.30553 * 170.17858 * 9 8 7 37 37 H 1.09528 * 107.61815 * 184.90224 * 10 9 8 38 38 H 1.08599 * 108.10982 * 300.98189 * 10 9 8 39 39 H 1.09288 * 109.52933 * 35.33585 * 11 10 9 40 40 H 1.09641 * 108.90443 * 153.59963 * 11 10 9 41 41 H 1.08895 * 110.95847 * 342.68108 * 13 12 11 42 42 H 1.08704 * 110.97419 * 106.52514 * 13 12 11 43 43 H 1.08666 * 110.70203 * 153.91970 * 14 13 12 44 44 H 1.08873 * 110.31955 * 277.56577 * 14 13 12 45 45 H 0.97003 * 120.00474 * 180.02562 * 19 18 16 46 46 H 1.09138 * 110.47881 * 273.65840 * 24 15 14 47 47 H 1.09153 * 110.30986 * 151.96558 * 24 15 14 48 48 H 1.09335 * 108.77471 * 253.89967 * 25 7 5 49 49 H 1.09366 * 108.71880 * 11.16242 * 25 7 5 50 50 H 1.07999 * 120.49578 * 180.22383 * 26 4 3 51 51 H 1.08000 * 119.55006 * 179.74438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 -0.0064 5 6 4.3599 2.4521 -0.0134 6 8 3.9351 3.4277 0.5733 7 7 5.5376 2.5195 -0.6723 8 6 6.0652 1.3070 -1.2532 9 6 6.9740 0.5915 -0.2269 10 6 8.2092 1.3639 -0.0177 11 6 8.0082 2.7370 0.6113 12 6 7.7075 3.7808 -0.4274 13 6 8.5278 3.5764 -1.7124 14 6 9.0383 4.9981 -2.0527 15 7 9.2810 5.5947 -0.7174 16 6 10.3460 6.3626 -0.3255 17 1 11.2166 6.4424 -0.9598 18 6 10.3062 7.0378 0.8866 19 7 9.1819 7.1012 1.5679 20 14 11.8484 7.8564 1.5509 21 1 11.9179 9.2553 1.0574 22 1 11.8084 7.8567 3.0353 23 1 13.0446 7.1081 1.0880 24 6 8.1164 5.1780 0.0937 25 6 6.2108 3.8248 -0.7765 26 6 4.2343 -0.0508 -0.0013 27 6 3.4741 -1.2039 -0.0007 28 7 2.1571 -1.1465 -0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5140 31 1 -0.3633 0.8901 0.5138 32 1 1.6493 2.1378 0.0004 33 1 5.2440 0.6473 -1.5345 34 1 6.6428 1.5527 -2.1445 35 1 6.4478 0.4904 0.7208 36 1 7.2280 -0.4011 -0.6005 37 1 8.8574 0.7798 0.6443 38 1 8.7140 1.4590 -0.9746 39 1 7.1893 2.6916 1.3336 40 1 8.9228 3.0205 1.1453 41 1 9.3767 2.9187 -1.5321 42 1 7.9034 3.1937 -2.5159 43 1 9.9589 4.9482 -2.6279 44 1 8.2704 5.5586 -2.5832 45 1 9.1540 7.5734 2.4148 46 1 7.2913 5.8809 -0.0338 47 1 8.3917 5.1159 1.1481 48 1 6.0999 4.1973 -1.7985 49 1 5.7134 4.5308 -0.1054 50 1 5.3130 -0.1053 -0.0023 51 1 3.9653 -2.1657 -0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045974887.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:35 Heat of formation + Delta-G solvation = 58.296578 kcal Electronic energy + Delta-G solvation = -31462.156599 eV Core-core repulsion = 27556.293799 eV Total energy + Delta-G solvation = -3905.862799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.35664 -39.85400 -38.36015 -36.57030 -33.93534 -33.52548 -32.74631 -32.45058 -30.97548 -28.40303 -28.10384 -27.17108 -26.28506 -24.97394 -24.30486 -23.12238 -22.47752 -21.60702 -20.28380 -19.21472 -18.10196 -17.47819 -17.14590 -16.82747 -16.42507 -15.76860 -15.49851 -15.32063 -14.81903 -14.61733 -14.38673 -14.26768 -13.89111 -13.79593 -13.72805 -13.23351 -12.94464 -12.81214 -12.66861 -12.56204 -12.41442 -12.16372 -11.84266 -11.76052 -11.59319 -11.44476 -10.99442 -10.86580 -10.75373 -10.58158 -10.40735 -10.28810 -10.07450 -9.99198 -9.91450 -9.88415 -9.67391 -9.59778 -9.44936 -9.15845 -8.65666 -8.52879 -6.84943 -5.75834 -3.08441 0.59909 0.81848 2.69628 2.92191 3.38753 3.44362 3.46289 3.52987 4.00213 4.17737 4.47096 4.48427 4.59352 4.68902 4.77290 4.81972 4.94185 5.10359 5.18435 5.22555 5.24180 5.30043 5.34079 5.42892 5.44443 5.47531 5.54450 5.62160 5.71756 5.72357 5.76530 5.81314 5.86557 5.90436 6.02685 6.07631 6.19220 6.19824 6.25831 6.36450 6.42079 6.51177 6.58976 6.69178 6.77272 6.85912 6.97789 7.30794 7.41295 7.55597 7.67641 7.75244 8.08700 8.22479 9.14510 9.77390 10.53018 11.37921 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022145 B = 0.002734 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.086251 B =10237.429795 C =10703.315984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.121 3.879 3 C -0.121 4.121 4 C -0.075 4.075 5 C 0.548 3.452 6 O -0.524 6.524 7 N -0.587 5.587 8 C 0.092 3.908 9 C -0.146 4.146 10 C -0.123 4.123 11 C -0.090 4.090 12 C -0.087 4.087 13 C -0.124 4.124 14 C 0.122 3.878 15 N -0.597 5.597 16 C -0.225 4.225 17 H 0.076 0.924 18 C -0.007 4.007 19 N -0.915 5.915 20 Si 0.909 3.091 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.173 3.827 25 C 0.123 3.877 26 C -0.185 4.185 27 C 0.096 3.904 28 N -0.475 5.475 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.021 0.979 45 H 0.254 0.746 46 H 0.021 0.979 47 H 0.083 0.917 48 H 0.062 0.938 49 H 0.095 0.905 50 H 0.176 0.824 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.622 -18.528 -6.152 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.017 4.017 3 C -0.141 4.141 4 C -0.086 4.086 5 C 0.335 3.665 6 O -0.401 6.401 7 N -0.318 5.318 8 C -0.032 4.032 9 C -0.184 4.184 10 C -0.160 4.160 11 C -0.127 4.127 12 C -0.090 4.090 13 C -0.163 4.163 14 C -0.005 4.005 15 N -0.321 5.321 16 C -0.354 4.354 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.562 5.562 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.047 3.953 25 C 0.002 3.998 26 C -0.204 4.204 27 C -0.060 4.060 28 N -0.186 5.186 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.039 0.961 45 H 0.064 0.936 46 H 0.039 0.961 47 H 0.101 0.899 48 H 0.080 0.920 49 H 0.114 0.886 50 H 0.193 0.807 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.180 -18.558 -5.660 22.908 hybrid contribution 1.316 1.232 0.373 1.841 sum -10.864 -17.326 -5.287 21.123 Atomic orbital electron populations 1.20725 0.88405 1.03711 1.03231 1.21261 0.97226 0.87821 0.95362 1.22074 0.93221 0.99999 0.98826 1.20391 0.94377 0.94014 0.99848 1.18490 0.81461 0.87286 0.79277 1.90804 1.69330 1.37110 1.42822 1.47540 1.20577 1.10026 1.53626 1.22051 0.98111 0.86391 0.96664 1.21473 0.97843 0.99365 0.99738 1.20471 0.96765 0.96535 1.02214 1.20880 1.02027 0.92570 0.97264 1.21515 0.91966 0.99686 0.95803 1.22774 0.98832 0.99126 0.95595 1.21810 0.97372 0.91670 0.89615 1.44920 1.22697 1.59092 1.05368 1.18993 0.92700 1.20863 1.02803 0.90587 1.24834 0.97094 0.99652 0.98788 1.69907 1.23949 1.46370 1.15952 0.86176 0.82452 0.79271 0.78191 1.21567 1.21615 1.20680 1.21689 0.89010 0.87192 0.97442 1.22255 0.93192 0.82269 1.02120 1.23765 1.04769 0.92339 0.99510 1.22750 0.89130 0.98438 0.95720 1.67363 1.10489 1.29452 1.11259 0.90273 0.90314 0.90463 0.83936 0.89596 0.89770 0.90994 0.90462 0.92832 0.90994 0.92667 0.91218 0.91465 0.92790 0.93323 0.96149 0.93618 0.96097 0.89856 0.91964 0.88638 0.80738 0.82206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.17 36.01 0.37 -0.38 16 2 C 0.12 1.25 6.78 -82.63 -0.56 0.69 16 3 C -0.12 -1.38 9.35 -39.02 -0.36 -1.74 16 4 C -0.08 -0.92 5.37 -104.64 -0.56 -1.48 16 5 C 0.55 8.23 7.41 -12.04 -0.09 8.14 16 6 O -0.52 -9.91 16.08 5.35 0.09 -9.83 16 7 N -0.59 -7.97 2.27 -173.80 -0.39 -8.36 16 8 C 0.09 0.92 4.95 -4.29 -0.02 0.90 16 9 C -0.15 -1.36 4.04 -28.67 -0.12 -1.47 16 10 C -0.12 -1.46 4.82 -29.85 -0.14 -1.60 16 11 C -0.09 -1.44 4.35 -28.40 -0.12 -1.57 16 12 C -0.09 -1.52 0.62 -154.19 -0.10 -1.61 16 13 C -0.12 -1.99 4.66 -25.33 -0.12 -2.11 16 14 C 0.12 2.42 7.28 -2.10 -0.02 2.40 16 15 N -0.60 -14.83 3.37 -168.57 -0.57 -15.40 16 16 C -0.23 -6.19 10.36 -15.02 -0.16 -6.34 16 17 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 18 C -0.01 -0.19 5.41 -17.44 -0.09 -0.28 16 19 N -0.92 -26.89 10.82 55.49 0.60 -26.29 16 20 Si 0.91 21.95 29.57 -169.99 -5.03 16.93 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.17 4.04 4.81 -2.41 -0.01 4.03 16 25 C 0.12 1.99 4.95 -3.25 -0.02 1.98 16 26 C -0.18 -1.80 7.27 -39.02 -0.28 -2.08 16 27 C 0.10 0.88 11.17 -17.60 -0.20 0.69 16 28 N -0.48 -5.15 10.25 -9.52 -0.10 -5.25 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.14 1.55 8.04 -52.49 -0.42 1.13 16 33 H 0.09 0.74 4.90 -51.92 -0.25 0.49 16 34 H 0.08 0.80 6.87 -51.92 -0.36 0.45 16 35 H 0.07 0.71 6.52 -52.00 -0.34 0.37 16 36 H 0.08 0.50 8.15 -51.89 -0.42 0.08 16 37 H 0.05 0.60 8.17 -51.63 -0.42 0.18 16 38 H 0.07 0.84 5.37 -52.15 -0.28 0.56 16 39 H 0.05 0.93 7.77 -51.77 -0.40 0.53 16 40 H 0.07 1.29 7.70 -51.57 -0.40 0.89 16 41 H 0.07 1.06 6.30 -51.99 -0.33 0.73 16 42 H 0.05 0.73 6.53 -52.10 -0.34 0.39 16 43 H 0.05 0.93 8.11 -52.12 -0.42 0.50 16 44 H 0.02 0.41 8.13 -52.00 -0.42 -0.01 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.02 0.54 7.30 -51.85 -0.38 0.16 16 47 H 0.08 2.21 5.99 -51.84 -0.31 1.90 16 48 H 0.06 0.97 7.64 -51.74 -0.40 0.58 16 49 H 0.10 1.83 6.10 -51.72 -0.32 1.51 16 50 H 0.18 1.44 2.24 -52.52 -0.12 1.32 16 51 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -32.85 377.86 -9.87 -42.72 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.56 Total: 1.64 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.60 Total: -1.85 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.46 Total: -55.30 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.85 -9.87 -42.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045974887.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.019 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds