Wall clock time and date at job start Wed Apr 1 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46423 * 110.99920 * 2 1 4 4 C 1.53385 * 108.66830 * 181.14682 * 3 2 1 5 5 C 1.53043 * 107.92195 * 68.24907 * 4 3 2 6 6 H 1.09001 * 109.44186 * 72.73224 * 5 4 3 7 7 C 1.50700 * 109.43842 * 192.62395 * 5 4 3 8 8 O 1.21277 * 120.00280 * 26.06150 * 7 5 4 9 9 N 1.34777 * 119.99791 * 206.05949 * 7 5 4 10 10 C 1.46499 * 120.00321 * 184.24397 * 9 7 5 11 11 C 1.53006 * 110.88546 * 303.88570 * 10 9 7 12 12 C 1.55155 * 111.00920 * 180.02562 * 10 9 7 13 13 C 1.54319 * 102.94168 * 277.43197 * 12 10 9 14 14 N 1.47022 * 107.27325 * 337.80147 * 13 12 10 15 15 C 1.36939 * 125.64732 * 178.89514 * 14 13 12 16 16 H 1.08005 * 119.99453 * 175.01544 * 15 14 13 17 17 C 1.38813 * 120.00048 * 355.01783 * 15 14 13 18 18 N 1.31615 * 120.00242 * 5.24389 * 17 15 14 19 19 Si 1.86801 * 119.99771 * 185.24390 * 17 15 14 20 20 H 1.48496 * 109.47110 * 95.00028 * 19 17 15 21 21 H 1.48501 * 109.46877 * 214.99833 * 19 17 15 22 22 H 1.48504 * 109.47086 * 334.99556 * 19 17 15 23 23 C 1.47420 * 108.70222 * 358.94388 * 14 13 12 24 24 C 1.50804 * 109.65249 * 312.67789 * 5 4 3 25 25 C 1.38612 * 118.12251 * 195.49584 * 24 5 4 26 26 C 1.38049 * 120.48871 * 180.28687 * 25 24 5 27 27 C 1.38318 * 119.88841 * 0.02862 * 26 25 24 28 28 C 1.37810 * 119.95102 * 359.79589 * 27 26 25 29 29 C 1.38371 * 122.00993 * 15.60565 * 24 5 4 30 30 H 1.09006 * 109.46883 * 192.56990 * 1 2 3 31 31 H 1.09001 * 109.47185 * 312.56663 * 1 2 3 32 32 H 1.08994 * 109.47498 * 72.56945 * 1 2 3 33 33 H 1.08999 * 109.60546 * 61.38464 * 3 2 1 34 34 H 1.08994 * 109.72864 * 300.97334 * 3 2 1 35 35 H 1.09005 * 109.76844 * 308.64306 * 4 3 2 36 36 H 1.09001 * 109.81306 * 187.88457 * 4 3 2 37 37 H 0.97000 * 120.00371 * 4.25191 * 9 7 5 38 38 H 1.08994 * 109.46813 * 59.29663 * 11 10 9 39 39 H 1.09001 * 109.46528 * 179.29409 * 11 10 9 40 40 H 1.08992 * 109.46911 * 299.29254 * 11 10 9 41 41 H 1.09001 * 110.71608 * 35.79821 * 12 10 9 42 42 H 1.09005 * 110.72310 * 159.06599 * 12 10 9 43 43 H 1.08995 * 109.88697 * 97.22819 * 13 12 10 44 44 H 1.09007 * 109.87821 * 218.38380 * 13 12 10 45 45 H 0.97001 * 120.00216 * 179.97438 * 18 17 15 46 46 H 1.08994 * 110.37131 * 265.28906 * 23 14 13 47 47 H 1.09004 * 110.36955 * 142.96143 * 23 14 13 48 48 H 1.07995 * 119.75555 * 0.30076 * 25 24 5 49 49 H 1.08001 * 120.05866 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.02745 * 179.88731 * 27 26 25 51 51 H 1.07997 * 119.78802 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3670 0.0000 4 6 3.5260 1.3047 -0.0291 5 6 3.9492 0.7561 -1.3937 6 1 3.7868 1.5172 -2.1569 7 6 5.4103 0.3889 -1.3554 8 8 5.9336 0.0922 -0.3023 9 7 6.1354 0.3902 -2.4915 10 6 7.5307 -0.0559 -2.4705 11 6 8.3450 0.7477 -1.4545 12 6 8.1640 0.0316 -3.8842 13 6 7.6951 -1.2770 -4.5545 14 7 7.3612 -2.2228 -3.4796 15 6 6.8843 -3.4944 -3.6551 16 1 6.7447 -4.1413 -2.8015 17 6 6.5804 -3.9519 -4.9299 18 7 6.8468 -3.2029 -5.9788 19 14 5.7934 -5.6308 -5.1567 20 1 4.3188 -5.4784 -5.2444 21 1 6.3021 -6.2512 -6.4063 22 1 6.1336 -6.4974 -3.9997 23 6 7.6237 -1.5750 -2.1816 24 6 3.1325 -0.4679 -1.7237 25 6 3.5762 -1.2936 -2.7449 26 6 2.8633 -2.4237 -3.0916 27 6 1.6968 -2.7367 -2.4173 28 6 1.2514 -1.9225 -1.3985 29 6 1.9686 -0.7785 -1.0429 30 1 -0.3633 -1.0031 0.2237 31 1 -0.3633 0.6952 0.7569 32 1 -0.3634 0.3078 -0.9804 33 1 1.6657 1.8847 0.9014 34 1 1.6326 1.8997 -0.8797 35 1 3.8832 0.6440 0.7609 36 1 3.9391 2.3036 0.1111 37 1 5.7336 0.6866 -3.3231 38 1 7.9117 0.6238 -0.4621 39 1 9.3744 0.3892 -1.4490 40 1 8.3291 1.8024 -1.7289 41 1 7.7841 0.8991 -4.4239 42 1 9.2516 0.0630 -3.8183 43 1 6.8139 -1.0850 -5.1665 44 1 8.4958 -1.6848 -5.1717 45 1 6.6348 -3.5228 -6.8697 46 1 8.6203 -1.8328 -1.8236 47 1 6.8696 -1.8691 -1.4514 48 1 4.4865 -1.0511 -3.2729 49 1 3.2156 -3.0624 -3.8881 50 1 1.1364 -3.6193 -2.6879 51 1 0.3401 -2.1692 -0.8741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046383383.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:56 Heat of formation + Delta-G solvation = 31.888673 kcal Electronic energy + Delta-G solvation = -32365.056630 eV Core-core repulsion = 28458.048699 eV Total energy + Delta-G solvation = -3907.007932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.89006 -39.44742 -37.34261 -36.66321 -34.21669 -33.88929 -31.82301 -30.30990 -29.87224 -29.58816 -28.67286 -27.37566 -25.64741 -24.56562 -23.65677 -23.13035 -21.97931 -20.68316 -20.12577 -19.23787 -19.03849 -17.42819 -16.84395 -16.52086 -16.06204 -15.72815 -15.47142 -14.63279 -14.53126 -14.46103 -14.20735 -13.98584 -13.71822 -13.48210 -13.38247 -13.00044 -12.91888 -12.73481 -12.44755 -12.16784 -11.99992 -11.95994 -11.83846 -11.76374 -11.64027 -11.57638 -11.14079 -10.92399 -10.87992 -10.75163 -10.48782 -10.34079 -10.30075 -10.05862 -9.98680 -9.73897 -9.65641 -9.21026 -8.62769 -8.47751 -8.44150 -7.53228 -6.78135 -5.69954 -3.00840 1.59223 1.71582 3.00173 3.39220 3.46699 3.48401 3.51912 3.63957 4.11965 4.51887 4.59125 4.74822 4.82309 4.92697 5.05116 5.19235 5.22829 5.29995 5.33319 5.34251 5.40091 5.45551 5.50778 5.61661 5.63236 5.65672 5.70854 5.75310 5.75788 5.86627 5.99146 6.06284 6.16098 6.20134 6.23381 6.33186 6.37731 6.40677 6.42821 6.57114 6.72868 6.78581 6.83185 6.96746 7.01246 7.08210 7.16967 7.46297 7.54285 7.59318 7.82150 7.94811 8.27197 8.63370 9.25313 9.85126 10.51651 11.42069 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.005194 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.054986 B = 5389.238859 C = 7592.927531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.497 5.497 3 C 0.060 3.940 4 C -0.106 4.106 5 C -0.061 4.061 6 H 0.092 0.908 7 C 0.529 3.471 8 O -0.534 6.534 9 N -0.702 5.702 10 C 0.157 3.843 11 C -0.153 4.153 12 C -0.148 4.148 13 C 0.177 3.823 14 N -0.601 5.601 15 C -0.216 4.216 16 H 0.075 0.925 17 C -0.005 4.005 18 N -0.922 5.922 19 Si 0.901 3.099 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.282 1.282 23 C 0.134 3.866 24 C -0.122 4.122 25 C -0.073 4.073 26 C -0.131 4.131 27 C -0.095 4.095 28 C -0.169 4.169 29 C 0.128 3.872 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.397 0.603 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.040 0.960 45 H 0.250 0.750 46 H 0.024 0.976 47 H 0.048 0.952 48 H 0.136 0.864 49 H 0.127 0.873 50 H 0.119 0.881 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.125 12.197 7.594 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.211 5.211 3 C -0.067 4.067 4 C -0.144 4.144 5 C -0.083 4.083 6 H 0.110 0.890 7 C 0.315 3.685 8 O -0.411 6.411 9 N -0.353 5.353 10 C 0.070 3.930 11 C -0.211 4.211 12 C -0.186 4.186 13 C 0.052 3.948 14 N -0.327 5.327 15 C -0.344 4.344 16 H 0.092 0.908 17 C -0.201 4.201 18 N -0.571 5.571 19 Si 0.732 3.268 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.207 1.207 23 C 0.007 3.993 24 C -0.126 4.126 25 C -0.092 4.092 26 C -0.150 4.150 27 C -0.113 4.113 28 C -0.189 4.189 29 C 0.030 3.970 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.231 0.769 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.042 0.958 47 H 0.067 0.933 48 H 0.154 0.846 49 H 0.145 0.855 50 H 0.137 0.863 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.677 11.677 8.656 17.462 hybrid contribution -0.759 -0.677 -1.384 1.718 sum -10.436 10.999 7.272 16.816 Atomic orbital electron populations 1.22494 0.85299 1.03178 1.00998 1.58109 1.08288 1.13114 1.41597 1.22155 0.95587 0.87427 1.01485 1.21601 0.93937 1.02170 0.96700 1.20194 0.92030 0.96409 0.99620 0.88971 1.20144 0.87499 0.76965 0.83905 1.90609 1.71892 1.48255 1.30367 1.45952 1.12653 1.66261 1.10419 1.21485 0.80136 0.95396 0.95968 1.22061 0.99441 0.98636 1.00993 1.23232 1.00233 1.00724 0.94432 1.21163 0.98951 0.84856 0.89840 1.44421 1.76645 1.12247 0.99364 1.19023 1.34643 0.87921 0.92833 0.90760 1.24698 1.01736 0.98237 0.95446 1.69946 1.52927 1.36852 0.97356 0.86243 0.79343 0.83987 0.77193 1.21597 1.21897 1.20713 1.21854 0.98201 0.89155 0.90075 1.19012 0.96566 0.98125 0.98858 1.21311 0.99096 0.93652 0.95102 1.21144 0.95034 0.97653 1.01160 1.20984 0.96370 0.98584 0.95387 1.20981 1.01466 0.96042 1.00429 1.18418 0.94680 0.94494 0.89428 0.90525 0.90944 0.94354 0.89642 0.93745 0.88823 0.90430 0.76858 0.90104 0.92178 0.93354 0.91832 0.90985 0.93320 0.94201 0.93939 0.95833 0.93344 0.84609 0.85498 0.86313 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 8.78 60.06 0.53 0.77 16 2 N -0.50 -6.17 4.78 -179.13 -0.86 -7.02 16 3 C 0.06 0.63 5.44 -3.88 -0.02 0.61 16 4 C -0.11 -1.30 5.26 -26.51 -0.14 -1.44 16 5 C -0.06 -0.85 2.66 -92.85 -0.25 -1.10 16 6 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 7 C 0.53 8.79 5.55 -10.99 -0.06 8.73 16 8 O -0.53 -10.42 12.77 5.56 0.07 -10.35 16 9 N -0.70 -11.30 4.03 -45.62 -0.18 -11.49 16 10 C 0.16 2.75 0.83 -129.66 -0.11 2.64 16 11 C -0.15 -2.38 8.52 37.16 0.32 -2.07 16 12 C -0.15 -2.57 5.97 -24.90 -0.15 -2.72 16 13 C 0.18 4.03 5.37 -3.07 -0.02 4.01 16 14 N -0.60 -14.83 3.39 -170.07 -0.58 -15.41 16 15 C -0.22 -5.91 10.27 -15.06 -0.15 -6.06 16 16 H 0.07 2.06 7.83 -52.48 -0.41 1.65 16 17 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 18 N -0.92 -26.02 10.34 55.49 0.57 -25.44 16 19 Si 0.90 21.91 29.56 -169.99 -5.02 16.88 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.13 2.92 6.19 -2.53 -0.02 2.90 16 24 C -0.12 -1.95 5.40 -104.38 -0.56 -2.51 16 25 C -0.07 -1.31 9.07 -39.51 -0.36 -1.67 16 26 C -0.13 -2.36 10.05 -39.62 -0.40 -2.75 16 27 C -0.09 -1.46 10.04 -39.71 -0.40 -1.85 16 28 C -0.17 -2.41 9.03 -39.22 -0.35 -2.76 16 29 C 0.13 1.90 5.80 -83.85 -0.49 1.41 16 30 H 0.08 0.67 6.43 -51.93 -0.33 0.33 16 31 H 0.07 0.52 8.03 -51.93 -0.42 0.10 16 32 H 0.04 0.35 8.11 -51.93 -0.42 -0.08 16 33 H 0.09 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.04 0.43 8.11 -51.93 -0.42 0.01 16 35 H 0.09 1.41 7.41 -51.93 -0.38 1.02 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.40 5.78 8.07 -40.82 -0.33 5.45 16 38 H 0.08 1.39 5.88 -51.93 -0.31 1.09 16 39 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 42 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 43 H 0.05 1.20 7.25 -51.93 -0.38 0.83 16 44 H 0.04 1.03 7.64 -51.93 -0.40 0.63 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.02 0.52 8.03 -51.93 -0.42 0.11 16 47 H 0.05 1.16 7.00 -51.93 -0.36 0.79 16 48 H 0.14 2.65 6.05 -52.49 -0.32 2.33 16 49 H 0.13 2.46 8.06 -52.49 -0.42 2.04 16 50 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 51 H 0.12 1.43 6.02 -52.49 -0.32 1.11 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -31.32 388.99 -11.00 -42.32 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -8.14 Total: 8.77 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -2.72 Total: -4.12 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -1.04 Total: -59.36 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.32 -11.00 -42.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046383383.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.204 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds