Wall clock time and date at job start Wed Apr 1 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46423 * 111.00354 * 2 1 4 4 C 1.53393 * 108.64017 * 72.16991 * 3 2 1 5 5 C 1.53047 * 107.92627 * 68.27916 * 4 3 2 6 6 H 1.09003 * 109.44008 * 72.79609 * 5 4 3 7 7 C 1.50695 * 109.44283 * 192.68228 * 5 4 3 8 8 O 1.21286 * 119.99849 * 36.04288 * 7 5 4 9 9 N 1.34782 * 120.00089 * 216.04224 * 7 5 4 10 10 C 1.46497 * 119.99730 * 184.91364 * 9 7 5 11 11 C 1.53001 * 110.88848 * 62.43001 * 10 9 7 12 12 C 1.55155 * 110.99937 * 186.35097 * 10 9 7 13 13 C 1.54322 * 102.94386 * 82.57517 * 12 10 9 14 14 N 1.47015 * 107.27201 * 22.18863 * 13 12 10 15 15 C 1.36936 * 125.65138 * 181.09620 * 14 13 12 16 16 H 1.07994 * 120.00402 * 179.97438 * 15 14 13 17 17 C 1.38815 * 120.00052 * 359.96009 * 15 14 13 18 18 N 1.31624 * 119.99437 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00438 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46859 * 59.99636 * 19 17 15 21 21 H 1.48500 * 109.47079 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46579 * 299.99674 * 19 17 15 23 23 C 1.47427 * 108.70246 * 1.06399 * 14 13 12 24 24 C 1.50804 * 109.66097 * 312.74291 * 5 4 3 25 25 C 1.38618 * 118.12668 * 195.45738 * 24 5 4 26 26 C 1.38047 * 120.48549 * 180.20687 * 25 24 5 27 27 C 1.38313 * 119.89390 * 0.02562 * 26 25 24 28 28 C 1.37802 * 119.95221 * 359.89373 * 27 26 25 29 29 C 1.38376 * 122.01547 * 15.47423 * 24 5 4 30 30 H 1.09003 * 109.46892 * 297.23679 * 1 2 3 31 31 H 1.09005 * 109.46846 * 57.22910 * 1 2 3 32 32 H 1.09003 * 109.47482 * 177.23115 * 1 2 3 33 33 H 1.08992 * 109.60866 * 191.93778 * 3 2 1 34 34 H 1.09008 * 109.60539 * 312.26934 * 3 2 1 35 35 H 1.09006 * 109.76470 * 308.68327 * 4 3 2 36 36 H 1.08994 * 109.78122 * 187.88927 * 4 3 2 37 37 H 0.96996 * 119.99327 * 4.91581 * 9 7 5 38 38 H 1.09001 * 109.47097 * 60.69590 * 11 10 9 39 39 H 1.08990 * 109.47289 * 180.69794 * 11 10 9 40 40 H 1.09003 * 109.47028 * 300.69775 * 11 10 9 41 41 H 1.09005 * 110.71911 * 200.93582 * 12 10 9 42 42 H 1.09000 * 110.72126 * 324.20605 * 12 10 9 43 43 H 1.09005 * 109.88305 * 262.77330 * 13 12 10 44 44 H 1.08998 * 110.01246 * 141.68490 * 13 12 10 45 45 H 0.97007 * 119.99700 * 180.02562 * 18 17 15 46 46 H 1.09005 * 110.36567 * 217.03062 * 23 14 13 47 47 H 1.08999 * 110.46074 * 94.75738 * 23 14 13 48 48 H 1.07996 * 119.75304 * 0.20633 * 25 24 5 49 49 H 1.08004 * 120.05159 * 180.02562 * 26 25 24 50 50 H 1.08007 * 120.02376 * 179.90843 * 27 26 25 51 51 H 1.07996 * 119.79292 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3669 0.0000 4 6 1.7541 1.9842 1.3837 5 6 2.6504 1.2543 2.3868 6 1 3.6865 1.5568 2.2345 7 6 2.2263 1.6085 3.7888 8 8 1.0520 1.7729 4.0438 9 7 3.1519 1.7425 4.7593 10 6 2.7332 1.9801 6.1429 11 6 1.9100 0.8046 6.6733 12 6 3.9576 2.2588 7.0542 13 6 4.2300 3.7593 6.8179 14 7 2.9816 4.3568 6.3221 15 6 2.8091 5.6691 5.9712 16 1 1.8484 6.0114 5.6161 17 6 3.8692 6.5597 6.0721 18 7 5.0402 6.1424 6.5046 19 14 3.6338 8.3501 5.5941 20 1 2.5758 8.9540 6.4431 21 1 4.9081 9.0866 5.7913 22 1 3.2307 8.4325 4.1672 23 6 1.9462 3.3088 6.2645 24 6 2.5279 -0.2353 2.1865 25 6 2.9959 -1.0702 3.1893 26 6 2.9120 -2.4415 3.0549 27 6 2.3578 -2.9896 1.9123 28 6 1.8889 -2.1660 0.9119 29 6 1.9685 -0.7783 1.0432 30 1 -0.3633 0.4703 0.9138 31 1 -0.3633 0.5563 -0.8642 32 1 -0.3634 -1.0265 -0.0496 33 1 3.0627 1.3484 -0.2124 34 1 1.4801 1.9560 -0.7599 35 1 0.7085 1.8610 1.6660 36 1 2.0092 3.0437 1.3642 37 1 4.0951 1.6815 4.5415 38 1 2.5150 -0.1018 6.6517 39 1 1.6007 1.0106 7.6979 40 1 1.0277 0.6675 6.0481 41 1 3.7110 2.0716 8.0994 42 1 4.8130 1.6582 6.7452 43 1 5.0192 3.8805 6.0759 44 1 4.5239 4.2368 7.7527 45 1 5.7809 6.7648 6.5755 46 1 1.3085 3.4532 5.3923 47 1 1.3482 3.3135 7.1757 48 1 3.4294 -0.6445 4.0822 49 1 3.2784 -3.0854 3.8408 50 1 2.2924 -4.0622 1.8043 51 1 1.4571 -2.5967 0.0206 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046383385.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:04 Heat of formation + Delta-G solvation = 28.270217 kcal Electronic energy + Delta-G solvation = -31712.785122 eV Core-core repulsion = 27805.620282 eV Total energy + Delta-G solvation = -3907.164840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.11782 -39.50476 -37.36000 -37.03527 -33.97679 -33.88310 -31.78212 -30.50415 -30.07517 -29.92056 -28.68427 -27.38841 -25.66718 -24.75547 -23.71126 -23.25903 -22.46821 -20.84927 -20.14544 -19.41438 -19.06217 -17.50502 -16.90930 -16.49747 -16.26280 -15.85388 -15.52435 -14.76938 -14.63540 -14.48850 -14.36804 -14.17005 -13.76598 -13.65184 -13.35943 -13.27458 -12.97183 -12.80511 -12.54677 -12.26453 -12.12957 -12.06956 -11.96515 -11.89434 -11.76254 -11.63884 -11.48405 -10.97918 -10.90619 -10.86781 -10.72850 -10.41892 -10.35262 -10.10436 -9.98485 -9.64730 -9.58902 -9.24544 -8.74883 -8.62762 -8.51781 -8.04753 -6.78293 -5.69595 -3.01189 1.20605 1.27820 2.93857 3.40218 3.41766 3.45589 3.46862 3.55142 3.79999 4.51372 4.51911 4.61157 4.72238 4.83191 4.96343 5.04310 5.08429 5.16161 5.24282 5.28200 5.31906 5.38346 5.41245 5.46524 5.49744 5.58912 5.61421 5.62074 5.66464 5.72574 5.86101 5.91806 5.99852 6.11773 6.14012 6.14632 6.20900 6.31575 6.33780 6.40166 6.44273 6.54103 6.64173 6.68466 6.82229 6.85908 7.16158 7.23053 7.55664 7.57214 7.80789 7.90466 8.27792 8.58912 9.25102 9.85265 10.51615 11.42380 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.003449 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.797382 B = 8115.652994 C = 9304.554592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.503 5.503 3 C 0.057 3.943 4 C -0.145 4.145 5 C -0.065 4.065 6 H 0.099 0.901 7 C 0.530 3.470 8 O -0.534 6.534 9 N -0.701 5.701 10 C 0.156 3.844 11 C -0.148 4.148 12 C -0.146 4.146 13 C 0.178 3.822 14 N -0.602 5.602 15 C -0.221 4.221 16 H 0.075 0.925 17 C -0.009 4.009 18 N -0.925 5.925 19 Si 0.910 3.090 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.130 3.870 24 C -0.101 4.101 25 C -0.099 4.099 26 C -0.133 4.133 27 C -0.108 4.108 28 C -0.123 4.123 29 C 0.118 3.882 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.397 0.603 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.251 0.749 46 H 0.058 0.942 47 H 0.022 0.978 48 H 0.124 0.876 49 H 0.122 0.878 50 H 0.122 0.878 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.542 -18.197 -10.286 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.219 5.219 3 C -0.071 4.071 4 C -0.184 4.184 5 C -0.086 4.086 6 H 0.117 0.883 7 C 0.316 3.684 8 O -0.410 6.410 9 N -0.351 5.351 10 C 0.069 3.931 11 C -0.206 4.206 12 C -0.185 4.185 13 C 0.053 3.947 14 N -0.329 5.329 15 C -0.350 4.350 16 H 0.093 0.907 17 C -0.205 4.205 18 N -0.573 5.573 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.004 3.996 24 C -0.104 4.104 25 C -0.118 4.118 26 C -0.151 4.151 27 C -0.127 4.127 28 C -0.143 4.143 29 C 0.022 3.978 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.231 0.769 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.040 0.960 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.140 0.860 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.140 -18.047 -10.556 21.314 hybrid contribution 0.384 1.396 0.442 1.514 sum -3.755 -16.651 -10.114 19.841 Atomic orbital electron populations 1.22498 0.85044 1.02716 1.01666 1.58791 1.08476 1.13350 1.41320 1.22259 1.01428 0.86951 0.96443 1.22126 1.01161 1.00524 0.94574 1.20226 1.01889 0.92532 0.94003 0.88334 1.20033 0.86168 0.76389 0.85845 1.90636 1.17861 1.50005 1.82524 1.45894 1.09211 1.72350 1.07620 1.21479 0.95904 0.95374 0.80301 1.21965 1.00533 0.96857 1.01262 1.23223 0.95930 1.00753 0.98595 1.21137 0.89106 0.85526 0.98911 1.44422 1.06598 1.04975 1.76859 1.19013 0.96415 0.83138 1.36426 0.90715 1.24754 0.95805 0.98118 1.01837 1.69941 1.01225 1.33521 1.52626 0.86218 0.76669 0.84768 0.78251 1.21221 1.21634 1.21294 1.21902 0.92044 0.86575 0.99116 1.19507 1.03226 0.93761 0.93919 1.21111 0.98879 0.93625 0.98200 1.21024 1.01060 0.94800 0.98249 1.20977 0.98391 0.99540 0.93771 1.20978 1.02248 0.91561 0.99497 1.18446 0.98113 0.92576 0.88685 0.94005 0.90749 0.91081 0.89931 0.89459 0.89605 0.89838 0.76884 0.93144 0.91796 0.91403 0.90942 0.91821 0.93728 0.93884 0.93852 0.92344 0.95997 0.85853 0.86042 0.85968 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.22 60.07 0.55 0.81 16 2 N -0.50 -5.54 4.74 -179.12 -0.85 -6.39 16 3 C 0.06 0.59 5.81 -3.88 -0.02 0.57 16 4 C -0.14 -1.86 5.21 -26.50 -0.14 -2.00 16 5 C -0.07 -0.88 2.67 -92.85 -0.25 -1.13 16 6 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 7 C 0.53 8.75 5.25 -10.99 -0.06 8.69 16 8 O -0.53 -10.52 12.82 5.55 0.07 -10.45 16 9 N -0.70 -11.24 4.44 -45.63 -0.20 -11.44 16 10 C 0.16 2.74 0.82 -129.67 -0.11 2.63 16 11 C -0.15 -2.25 8.62 37.16 0.32 -1.93 16 12 C -0.15 -2.57 5.99 -24.90 -0.15 -2.72 16 13 C 0.18 4.19 5.37 -3.07 -0.02 4.18 16 14 N -0.60 -15.48 3.39 -170.08 -0.58 -16.06 16 15 C -0.22 -6.29 10.28 -15.06 -0.15 -6.45 16 16 H 0.07 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -26.96 10.31 55.49 0.57 -26.39 16 19 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.13 2.89 6.10 -2.53 -0.02 2.87 16 24 C -0.10 -1.30 5.40 -104.38 -0.56 -1.86 16 25 C -0.10 -1.20 9.07 -39.51 -0.36 -1.56 16 26 C -0.13 -1.39 10.05 -39.62 -0.40 -1.79 16 27 C -0.11 -1.06 10.03 -39.71 -0.40 -1.46 16 28 C -0.12 -1.31 9.29 -39.23 -0.36 -1.67 16 29 C 0.12 1.43 5.12 -83.85 -0.43 1.00 16 30 H 0.04 0.47 6.60 -51.93 -0.34 0.13 16 31 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 32 H 0.07 0.62 7.70 -51.93 -0.40 0.22 16 33 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 34 H 0.09 0.77 7.99 -51.92 -0.41 0.36 16 35 H 0.09 1.25 5.77 -51.93 -0.30 0.95 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.40 5.68 8.44 -40.82 -0.34 5.33 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 40 H 0.07 1.14 6.63 -51.93 -0.34 0.79 16 41 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 42 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 43 H 0.04 1.15 7.38 -51.93 -0.38 0.76 16 44 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.06 1.40 6.15 -51.93 -0.32 1.09 16 47 H 0.02 0.50 8.03 -51.93 -0.42 0.08 16 48 H 0.12 1.46 6.82 -52.49 -0.36 1.11 16 49 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 50 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 51 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -32.62 390.43 -10.96 -43.58 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.19 Total: 6.08 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.64 Total: -2.19 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -1.06 Total: -60.28 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.62 -10.96 -43.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046383385.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.852 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds