Wall clock time and date at job start Wed Apr 1 2020 02:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 110.64451 * 2 1 4 4 C 1.34774 * 119.99939 * 61.68352 * 3 2 1 5 5 O 1.21284 * 119.99843 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00376 * 180.02562 * 4 3 2 7 7 H 1.08999 * 110.64843 * 61.69936 * 6 4 3 8 8 C 1.54600 * 110.72403 * 298.54679 * 6 4 3 9 9 C 1.53986 * 105.14152 * 219.68225 * 8 6 4 10 10 N 1.47893 * 107.06232 * 358.77690 * 9 8 6 11 11 C 1.39674 * 111.00320 * 145.84217 * 10 9 8 12 12 C 1.38906 * 120.07461 * 119.85277 * 11 10 9 13 13 C 1.38105 * 119.92633 * 179.77080 * 12 11 10 14 14 C 1.38285 * 120.07143 * 0.50004 * 13 12 11 15 15 C 1.38286 * 120.15166 * 359.75169 * 14 13 12 16 16 C 1.38102 * 120.07165 * 359.97438 * 15 14 13 17 17 C 1.48536 * 105.81839 * 25.32515 * 10 9 8 18 18 C 1.55158 * 110.87512 * 236.75200 * 2 1 3 19 19 C 1.55126 * 101.49111 * 205.89738 * 18 2 1 20 20 N 1.47428 * 104.71936 * 37.29433 * 19 18 2 21 21 C 1.36938 * 125.65112 * 155.81651 * 20 19 18 22 22 H 1.07999 * 120.00325 * 179.69062 * 21 20 19 23 23 C 1.38815 * 119.99817 * 359.69708 * 21 20 19 24 24 N 1.31621 * 119.99673 * 359.71804 * 23 21 20 25 25 Si 1.86795 * 120.00115 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47071 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47211 * 119.99797 * 25 23 21 28 28 H 1.48493 * 109.47327 * 239.99664 * 25 23 21 29 29 C 1.47022 * 108.70445 * 335.55505 * 20 19 18 30 30 H 1.08997 * 109.47346 * 298.31225 * 1 2 3 31 31 H 1.08999 * 109.47086 * 58.31058 * 1 2 3 32 32 H 1.09004 * 109.47183 * 178.30857 * 1 2 3 33 33 H 0.97000 * 120.00206 * 241.69658 * 3 2 1 34 34 H 1.09000 * 110.30799 * 338.60504 * 8 6 4 35 35 H 1.09000 * 110.30751 * 100.76162 * 8 6 4 36 36 H 1.09007 * 109.91425 * 118.13009 * 9 8 6 37 37 H 1.09004 * 109.91986 * 239.42221 * 9 8 6 38 38 H 1.08003 * 120.04224 * 0.02562 * 12 11 10 39 39 H 1.08002 * 119.96488 * 180.25538 * 13 12 11 40 40 H 1.08003 * 119.92181 * 179.76744 * 14 13 12 41 41 H 1.07994 * 119.96227 * 180.02562 * 15 14 13 42 42 H 1.08006 * 120.03713 * 180.02562 * 16 15 14 43 43 H 1.08998 * 110.67109 * 202.35619 * 17 10 9 44 44 H 1.09009 * 110.66512 * 79.23457 * 17 10 9 45 45 H 1.09007 * 111.00385 * 324.13834 * 18 2 1 46 46 H 1.09000 * 111.00511 * 87.98667 * 18 2 1 47 47 H 1.09002 * 110.49763 * 278.45589 * 19 18 2 48 48 H 1.08996 * 110.34670 * 156.05742 * 19 18 2 49 49 H 0.97000 * 120.00043 * 180.02562 * 24 23 21 50 50 H 1.08997 * 109.88563 * 120.70456 * 29 20 19 51 51 H 1.09000 * 109.88414 * 241.86883 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7660 2.1967 1.0275 5 8 1.0863 1.8047 1.9524 6 6 2.2968 3.6071 1.0273 7 1 1.9067 4.1645 0.1757 8 6 3.8427 3.6098 1.0211 9 6 4.2467 4.7532 1.9702 10 7 2.9965 5.3761 2.4561 11 6 3.1374 5.8204 3.7728 12 6 2.9692 7.1657 4.0752 13 6 3.1046 7.6010 5.3788 14 6 3.4173 6.7008 6.3810 15 6 3.5905 5.3617 6.0826 16 6 3.4510 4.9189 4.7819 17 6 1.9545 4.3220 2.3586 18 6 2.0829 -0.7948 -1.2124 19 6 3.4707 -1.2412 -0.6824 20 7 3.2471 -1.5461 0.7426 21 6 4.0077 -2.3900 1.5072 22 1 3.7635 -2.5436 2.5479 23 6 5.0927 -3.0481 0.9445 24 7 5.3871 -2.8651 -0.3253 25 14 6.1307 -4.1987 1.9875 26 1 5.5917 -4.2347 3.3707 27 1 6.0928 -5.5644 1.4052 28 1 7.5332 -3.7116 2.0158 29 6 2.0760 -0.7892 1.2086 30 1 -0.3634 0.4874 0.9047 31 1 -0.3633 0.5398 -0.8744 32 1 -0.3634 -1.0272 -0.0303 33 1 2.5902 1.6844 -0.7396 34 1 4.2242 2.6582 1.3912 35 1 4.2167 3.8028 0.0156 36 1 4.8142 4.3546 2.8112 37 1 4.8435 5.4894 1.4318 38 1 2.7289 7.8699 3.2924 39 1 2.9699 8.6461 5.6153 40 1 3.5263 7.0445 7.3990 41 1 3.8343 4.6613 6.8676 42 1 3.5860 3.8728 4.5496 43 1 0.9605 4.7668 2.3119 44 1 2.0282 3.6295 3.1972 45 1 1.4515 -1.6547 -1.4366 46 1 2.1887 -0.1515 -2.0859 47 1 4.1971 -0.4354 -0.7884 48 1 3.8103 -2.1313 -1.2120 49 1 6.1450 -3.3252 -0.7186 50 1 1.3141 -1.4754 1.5781 51 1 2.3711 -0.0992 1.9991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046416973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:48 Heat of formation + Delta-G solvation = 32.214533 kcal Electronic energy + Delta-G solvation = -30692.632914 eV Core-core repulsion = 26785.639112 eV Total energy + Delta-G solvation = -3906.993801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.71358 -39.69082 -37.98564 -36.92243 -34.03134 -33.03145 -31.68914 -31.09296 -30.03727 -29.13553 -28.68342 -28.45570 -25.69133 -24.04716 -23.37255 -22.68191 -22.22206 -20.72803 -20.45667 -19.92632 -18.93165 -17.87993 -16.98680 -16.68923 -16.32396 -15.64951 -15.41470 -15.06554 -14.69721 -14.51078 -14.33775 -14.08309 -13.67104 -13.60801 -13.59879 -13.31674 -13.02313 -12.74274 -12.37466 -12.30696 -12.24080 -12.10659 -11.75106 -11.68562 -11.56637 -11.51173 -11.36635 -11.30191 -10.95760 -10.91324 -10.86279 -10.38743 -10.36813 -10.06761 -9.91691 -9.66708 -9.23050 -9.10696 -8.81650 -8.76592 -8.66764 -8.61599 -6.81871 -5.66156 -3.06702 1.08879 1.22811 2.88071 3.31989 3.38850 3.45001 3.47277 3.55956 3.81954 4.36661 4.48689 4.60402 4.73813 4.79130 4.82314 4.93934 5.05434 5.16604 5.25269 5.26478 5.30372 5.35065 5.39211 5.48161 5.50604 5.56459 5.65251 5.72133 5.73790 5.78581 5.84902 5.90419 5.95832 6.03000 6.15933 6.20090 6.22756 6.33609 6.34479 6.35139 6.44945 6.50763 6.52707 6.63959 6.69662 6.82932 7.14507 7.22507 7.43850 7.63081 7.79350 7.86897 8.34625 8.52713 9.22375 9.83071 10.47920 11.37828 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.002927 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.545090 B = 9565.165500 C =10937.518232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 N -0.705 5.705 4 C 0.523 3.477 5 O -0.537 6.537 6 C -0.113 4.113 7 H 0.108 0.892 8 C -0.123 4.123 9 C 0.041 3.959 10 N -0.486 5.486 11 C 0.083 3.917 12 C -0.096 4.096 13 C -0.118 4.118 14 C -0.126 4.126 15 C -0.110 4.110 16 C -0.146 4.146 17 C 0.061 3.939 18 C -0.147 4.147 19 C 0.153 3.847 20 N -0.604 5.604 21 C -0.216 4.216 22 H 0.076 0.924 23 C -0.013 4.013 24 N -0.924 5.924 25 Si 0.913 3.087 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.291 1.291 29 C 0.138 3.862 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.397 0.603 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.010 0.990 48 H 0.108 0.892 49 H 0.251 0.749 50 H 0.029 0.971 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 19.736 2.926 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.073 3.927 3 N -0.356 5.356 4 C 0.308 3.692 5 O -0.414 6.414 6 C -0.135 4.135 7 H 0.126 0.874 8 C -0.162 4.162 9 C -0.085 4.085 10 N -0.207 5.207 11 C -0.011 4.011 12 C -0.115 4.115 13 C -0.136 4.136 14 C -0.144 4.144 15 C -0.129 4.129 16 C -0.166 4.166 17 C -0.065 4.065 18 C -0.186 4.186 19 C 0.028 3.972 20 N -0.330 5.330 21 C -0.344 4.344 22 H 0.094 0.906 23 C -0.208 4.208 24 N -0.574 5.574 25 Si 0.744 3.256 26 H -0.206 1.206 27 H -0.217 1.217 28 H -0.218 1.218 29 C 0.011 3.989 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.028 0.972 48 H 0.126 0.874 49 H 0.061 0.939 50 H 0.047 0.953 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.000 19.741 3.261 20.889 hybrid contribution 1.151 -1.110 0.641 1.722 sum -4.849 18.632 3.902 19.644 Atomic orbital electron populations 1.22027 0.94363 1.02104 1.02234 1.21347 0.92885 0.80495 0.97983 1.45978 1.53724 1.12695 1.23172 1.20204 0.80158 0.86626 0.82168 1.90674 1.38849 1.76816 1.35096 1.22213 0.96969 0.93875 1.00449 0.87385 1.22437 0.93349 0.99382 1.00988 1.22973 0.91492 0.95817 0.98249 1.62474 1.06142 1.34700 1.17419 1.19023 0.99586 0.93724 0.88756 1.21002 0.99552 0.94442 0.96475 1.21102 1.00116 0.99661 0.92758 1.21179 1.00387 0.93474 0.99330 1.21064 0.99651 0.95931 0.96263 1.21758 1.00794 1.00176 0.93869 1.23130 0.95531 0.91515 0.96315 1.23393 1.01242 0.98841 0.95090 1.21985 0.89317 1.00592 0.85316 1.44518 1.30445 1.50453 1.07592 1.19134 1.05843 1.16546 0.92924 0.90579 1.24754 0.98834 1.00773 0.96457 1.69776 1.30046 1.46684 1.10845 0.86009 0.80017 0.80415 0.79179 1.20563 1.21740 1.21828 1.21589 0.90227 0.93107 0.93969 0.91101 0.93168 0.91825 0.76879 0.90106 0.89844 0.92824 0.89722 0.85406 0.85854 0.86125 0.86028 0.85957 0.89369 0.91450 0.90567 0.91959 0.97218 0.87388 0.93868 0.95328 0.94920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.41 37.16 0.31 -2.01 16 2 C 0.16 2.78 0.81 -129.98 -0.10 2.68 16 3 N -0.71 -10.67 5.09 -45.91 -0.23 -10.90 16 4 C 0.52 8.01 6.26 -10.99 -0.07 7.94 16 5 O -0.54 -10.02 12.73 5.55 0.07 -9.95 16 6 C -0.11 -1.34 3.45 -89.91 -0.31 -1.65 16 7 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 8 C -0.12 -1.39 6.45 -25.38 -0.16 -1.55 16 9 C 0.04 0.45 6.51 -2.76 -0.02 0.43 16 10 N -0.49 -5.62 5.28 -167.17 -0.88 -6.51 16 11 C 0.08 0.97 4.85 -83.79 -0.41 0.57 16 12 C -0.10 -0.98 9.97 -39.38 -0.39 -1.37 16 13 C -0.12 -1.05 10.04 -39.61 -0.40 -1.45 16 14 C -0.13 -1.15 10.04 -39.55 -0.40 -1.54 16 15 C -0.11 -1.15 10.04 -39.61 -0.40 -1.54 16 16 C -0.15 -1.73 7.90 -39.38 -0.31 -2.04 16 17 C 0.06 0.77 5.44 -1.90 -0.01 0.76 16 18 C -0.15 -2.62 6.11 -24.46 -0.15 -2.77 16 19 C 0.15 3.56 5.89 -2.41 -0.01 3.55 16 20 N -0.60 -15.49 3.39 -169.93 -0.58 -16.06 16 21 C -0.22 -6.09 10.27 -15.06 -0.15 -6.25 16 22 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 23 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 24 N -0.92 -26.58 10.08 55.49 0.56 -26.02 16 25 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 C 0.14 3.05 6.13 -3.06 -0.02 3.04 16 30 H 0.07 1.20 6.44 -51.93 -0.33 0.86 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.40 5.14 8.46 -40.82 -0.35 4.79 16 34 H 0.08 1.11 7.84 -51.93 -0.41 0.70 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.63 6.69 -51.93 -0.35 0.28 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.12 1.54 7.05 -52.48 -0.37 1.17 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 0.98 6.03 -51.92 -0.31 0.67 16 45 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 46 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 47 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.11 2.86 5.85 -51.93 -0.30 2.56 16 49 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.03 0.65 7.82 -51.93 -0.41 0.25 16 51 H 0.03 0.79 6.47 -51.93 -0.34 0.45 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -31.83 395.58 -11.42 -43.25 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -8.19 Total: 6.72 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -3.10 Total: -3.68 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -1.13 Total: -59.50 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.83 -11.42 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046416973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.464 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds