Wall clock time and date at job start Wed Apr 1 2020 02:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 110.64451 * 2 1 4 4 C 1.34774 * 119.99939 * 61.68352 * 3 2 1 5 5 O 1.21284 * 119.99843 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00376 * 180.02562 * 4 3 2 7 7 H 1.08999 * 110.64843 * 61.69936 * 6 4 3 8 8 C 1.54600 * 110.72403 * 298.54679 * 6 4 3 9 9 C 1.53986 * 105.14152 * 219.68225 * 8 6 4 10 10 N 1.47893 * 107.06232 * 358.77690 * 9 8 6 11 11 C 1.39674 * 111.00320 * 145.84217 * 10 9 8 12 12 C 1.38906 * 120.07461 * 119.85277 * 11 10 9 13 13 C 1.38105 * 119.92633 * 179.77080 * 12 11 10 14 14 C 1.38285 * 120.07143 * 0.50004 * 13 12 11 15 15 C 1.38286 * 120.15166 * 359.75169 * 14 13 12 16 16 C 1.38102 * 120.07165 * 359.97438 * 15 14 13 17 17 C 1.48536 * 105.81839 * 25.32515 * 10 9 8 18 18 C 1.55158 * 110.87512 * 236.75200 * 2 1 3 19 19 C 1.55126 * 101.49111 * 205.89738 * 18 2 1 20 20 N 1.47428 * 104.71936 * 37.29433 * 19 18 2 21 21 C 1.36938 * 125.65112 * 155.81651 * 20 19 18 22 22 H 1.07999 * 120.00325 * 179.69062 * 21 20 19 23 23 C 1.38815 * 119.99817 * 359.69708 * 21 20 19 24 24 N 1.31621 * 119.99673 * 359.71804 * 23 21 20 25 25 Si 1.86795 * 120.00115 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47071 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47211 * 119.99797 * 25 23 21 28 28 H 1.48493 * 109.47327 * 239.99664 * 25 23 21 29 29 C 1.47022 * 108.70445 * 335.55505 * 20 19 18 30 30 H 1.08997 * 109.47346 * 298.31225 * 1 2 3 31 31 H 1.08999 * 109.47086 * 58.31058 * 1 2 3 32 32 H 1.09004 * 109.47183 * 178.30857 * 1 2 3 33 33 H 0.97000 * 120.00206 * 241.69658 * 3 2 1 34 34 H 1.09000 * 110.30799 * 338.60504 * 8 6 4 35 35 H 1.09000 * 110.30751 * 100.76162 * 8 6 4 36 36 H 1.09007 * 109.91425 * 118.13009 * 9 8 6 37 37 H 1.09004 * 109.91986 * 239.42221 * 9 8 6 38 38 H 1.08003 * 120.04224 * 0.02562 * 12 11 10 39 39 H 1.08002 * 119.96488 * 180.25538 * 13 12 11 40 40 H 1.08003 * 119.92181 * 179.76744 * 14 13 12 41 41 H 1.07994 * 119.96227 * 180.02562 * 15 14 13 42 42 H 1.08006 * 120.03713 * 180.02562 * 16 15 14 43 43 H 1.08998 * 110.67109 * 202.35619 * 17 10 9 44 44 H 1.09009 * 110.66512 * 79.23457 * 17 10 9 45 45 H 1.09007 * 111.00385 * 324.13834 * 18 2 1 46 46 H 1.09000 * 111.00511 * 87.98667 * 18 2 1 47 47 H 1.09002 * 110.49763 * 278.45589 * 19 18 2 48 48 H 1.08996 * 110.34670 * 156.05742 * 19 18 2 49 49 H 0.97000 * 120.00043 * 180.02562 * 24 23 21 50 50 H 1.08997 * 109.88563 * 120.70456 * 29 20 19 51 51 H 1.09000 * 109.88414 * 241.86883 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7660 2.1967 1.0275 5 8 1.0863 1.8047 1.9524 6 6 2.2968 3.6071 1.0273 7 1 1.9067 4.1645 0.1757 8 6 3.8427 3.6098 1.0211 9 6 4.2467 4.7532 1.9702 10 7 2.9965 5.3761 2.4561 11 6 3.1374 5.8204 3.7728 12 6 2.9692 7.1657 4.0752 13 6 3.1046 7.6010 5.3788 14 6 3.4173 6.7008 6.3810 15 6 3.5905 5.3617 6.0826 16 6 3.4510 4.9189 4.7819 17 6 1.9545 4.3220 2.3586 18 6 2.0829 -0.7948 -1.2124 19 6 3.4707 -1.2412 -0.6824 20 7 3.2471 -1.5461 0.7426 21 6 4.0077 -2.3900 1.5072 22 1 3.7635 -2.5436 2.5479 23 6 5.0927 -3.0481 0.9445 24 7 5.3871 -2.8651 -0.3253 25 14 6.1307 -4.1987 1.9875 26 1 5.5917 -4.2347 3.3707 27 1 6.0928 -5.5644 1.4052 28 1 7.5332 -3.7116 2.0158 29 6 2.0760 -0.7892 1.2086 30 1 -0.3634 0.4874 0.9047 31 1 -0.3633 0.5398 -0.8744 32 1 -0.3634 -1.0272 -0.0303 33 1 2.5902 1.6844 -0.7396 34 1 4.2242 2.6582 1.3912 35 1 4.2167 3.8028 0.0156 36 1 4.8142 4.3546 2.8112 37 1 4.8435 5.4894 1.4318 38 1 2.7289 7.8699 3.2924 39 1 2.9699 8.6461 5.6153 40 1 3.5263 7.0445 7.3990 41 1 3.8343 4.6613 6.8676 42 1 3.5860 3.8728 4.5496 43 1 0.9605 4.7668 2.3119 44 1 2.0282 3.6295 3.1972 45 1 1.4515 -1.6547 -1.4366 46 1 2.1887 -0.1515 -2.0859 47 1 4.1971 -0.4354 -0.7884 48 1 3.8103 -2.1313 -1.2120 49 1 6.1450 -3.3252 -0.7186 50 1 1.3141 -1.4754 1.5781 51 1 2.3711 -0.0992 1.9991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046416973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:47 Heat of formation + Delta-G solvation = 12.448250 kcal Electronic energy + Delta-G solvation = -30693.490044 eV Core-core repulsion = 26785.639112 eV Total energy + Delta-G solvation = -3907.850932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.78838 -40.83136 -39.20374 -38.17139 -35.74960 -34.16621 -33.28666 -31.88243 -31.61099 -30.43091 -30.04114 -29.37112 -27.56678 -25.57819 -24.57806 -23.60287 -23.15956 -22.27199 -21.60076 -21.18390 -20.35192 -19.08507 -18.69059 -17.75756 -17.24212 -17.15972 -16.71526 -16.41982 -16.07164 -15.69411 -15.48164 -15.34663 -15.11941 -14.88604 -14.46774 -14.41632 -14.24708 -14.11191 -14.06035 -13.62840 -13.34236 -13.25833 -13.18976 -13.13638 -12.85635 -12.80401 -12.66228 -12.34692 -12.27902 -12.12963 -12.10374 -12.04557 -11.97041 -11.84084 -11.69496 -11.49836 -10.78087 -10.58606 -10.01167 -9.89860 -9.70569 -9.62139 -8.90275 -7.80953 -5.24544 0.28704 0.43737 1.42788 1.43035 1.53653 1.65183 2.14478 2.45631 2.76710 2.85799 3.27899 3.38889 3.58340 3.63957 3.70411 3.83499 3.97023 4.01806 4.04859 4.15983 4.17262 4.23134 4.23432 4.34782 4.50565 4.52045 4.62274 4.65543 4.66783 4.76863 4.79877 4.81666 4.83971 4.86963 4.90128 4.95143 5.00579 5.04247 5.09515 5.10864 5.32518 5.40361 5.44310 5.52887 5.57234 5.57702 5.60830 5.69614 5.79754 5.86826 6.29786 6.34405 6.63528 7.09318 7.31295 7.75146 8.38530 9.19958 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.002927 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.545090 B = 9565.165500 C =10937.518232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.170 3.830 3 N -0.699 5.699 4 C 0.520 3.480 5 O -0.575 6.575 6 C -0.101 4.101 7 H 0.142 0.858 8 C -0.117 4.117 9 C 0.042 3.958 10 N -0.476 5.476 11 C 0.063 3.937 12 C -0.100 4.100 13 C -0.113 4.113 14 C -0.125 4.125 15 C -0.123 4.123 16 C -0.167 4.167 17 C 0.063 3.937 18 C -0.127 4.127 19 C 0.155 3.845 20 N -0.622 5.622 21 C -0.241 4.241 22 H 0.066 0.934 23 C -0.059 4.059 24 N -0.942 5.942 25 Si 0.976 3.024 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.289 1.289 29 C 0.137 3.863 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.411 0.589 34 H 0.047 0.953 35 H 0.111 0.889 36 H 0.037 0.963 37 H 0.105 0.895 38 H 0.142 0.858 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.036 0.964 45 H 0.082 0.918 46 H 0.103 0.897 47 H -0.006 1.006 48 H 0.076 0.924 49 H 0.249 0.751 50 H 0.017 0.983 51 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 22.153 2.002 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.083 3.917 3 N -0.351 5.351 4 C 0.307 3.693 5 O -0.454 6.454 6 C -0.122 4.122 7 H 0.160 0.840 8 C -0.155 4.155 9 C -0.085 4.085 10 N -0.197 5.197 11 C -0.031 4.031 12 C -0.119 4.119 13 C -0.132 4.132 14 C -0.142 4.142 15 C -0.142 4.142 16 C -0.187 4.187 17 C -0.064 4.064 18 C -0.166 4.166 19 C 0.031 3.969 20 N -0.349 5.349 21 C -0.370 4.370 22 H 0.084 0.916 23 C -0.252 4.252 24 N -0.591 5.591 25 Si 0.804 3.196 26 H -0.200 1.200 27 H -0.213 1.213 28 H -0.216 1.216 29 C 0.011 3.989 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.248 0.752 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.056 0.944 37 H 0.123 0.877 38 H 0.160 0.840 39 H 0.173 0.827 40 H 0.165 0.835 41 H 0.147 0.853 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.054 0.946 45 H 0.100 0.900 46 H 0.121 0.879 47 H 0.012 0.988 48 H 0.094 0.906 49 H 0.059 0.941 50 H 0.035 0.965 51 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -6.452 22.181 2.317 23.216 hybrid contribution 1.323 -1.847 1.035 2.497 sum -5.130 20.334 3.352 21.237 Atomic orbital electron populations 1.21944 0.92273 1.02698 1.02883 1.21139 0.94206 0.81089 0.95229 1.45881 1.53794 1.11623 1.23773 1.20797 0.79339 0.87807 0.81313 1.90664 1.40594 1.77772 1.36379 1.22199 0.97131 0.91636 1.01248 0.84019 1.22401 0.92846 0.97892 1.02397 1.23007 0.91517 0.96134 0.97805 1.62552 1.05861 1.33689 1.17592 1.19207 1.00753 0.94529 0.88597 1.21238 0.99216 0.93794 0.97651 1.21492 0.98502 1.01155 0.92001 1.21525 0.99164 0.92685 1.00863 1.21277 0.99872 0.97197 0.95816 1.21711 1.02543 0.99316 0.95113 1.23044 0.96278 0.91400 0.95631 1.23243 0.97425 0.99726 0.96209 1.21813 0.92326 0.98718 0.84091 1.44786 1.30985 1.50427 1.08653 1.19363 1.06916 1.17644 0.93109 0.91583 1.25516 0.99819 1.02165 0.97728 1.70004 1.30130 1.47135 1.11864 0.85049 0.78177 0.78392 0.77944 1.19994 1.21253 1.21599 1.21657 0.88978 0.92613 0.95651 0.92625 0.90096 0.91475 0.75242 0.93385 0.87007 0.94443 0.87724 0.83987 0.82747 0.83460 0.85272 0.88274 0.88904 0.94566 0.89984 0.87899 0.98760 0.90569 0.94132 0.96506 0.97564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.41 71.98 0.61 -3.52 16 2 C 0.17 5.83 0.81 4.79 0.00 5.84 16 3 N -0.70 -20.42 5.09 -417.56 -2.12 -22.54 16 4 C 0.52 15.89 6.26 87.66 0.55 16.44 16 5 O -0.57 -22.17 12.73 -3.04 -0.04 -22.21 16 6 C -0.10 -2.28 3.45 -10.34 -0.04 -2.32 16 7 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 8 C -0.12 -2.58 6.45 31.47 0.20 -2.37 16 9 C 0.04 0.91 6.51 86.45 0.56 1.47 16 10 N -0.48 -10.79 5.28 -682.80 -3.60 -14.40 16 11 C 0.06 1.47 4.85 38.21 0.19 1.66 16 12 C -0.10 -1.88 9.97 22.40 0.22 -1.66 16 13 C -0.11 -1.74 10.04 22.25 0.22 -1.51 16 14 C -0.12 -2.05 10.04 22.29 0.22 -1.82 16 15 C -0.12 -2.58 10.04 22.25 0.22 -2.35 16 16 C -0.17 -4.19 7.90 22.40 0.18 -4.02 16 17 C 0.06 1.60 5.44 86.65 0.47 2.07 16 18 C -0.13 -4.33 6.11 32.06 0.20 -4.14 16 19 C 0.16 7.34 5.89 86.93 0.51 7.85 16 20 N -0.62 -33.03 3.39 -691.54 -2.35 -35.38 16 21 C -0.24 -14.11 10.27 84.03 0.86 -13.25 16 22 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 23 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 24 N -0.94 -55.30 10.08 21.65 0.22 -55.08 16 25 Si 0.98 46.54 29.55 68.60 2.03 48.56 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 28 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 29 C 0.14 6.32 6.13 86.73 0.53 6.85 16 30 H 0.05 1.84 6.44 -2.39 -0.02 1.83 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.41 9.71 8.46 -92.71 -0.78 8.93 16 34 H 0.05 1.38 7.84 -2.39 -0.02 1.36 16 35 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.04 0.93 6.69 -2.38 -0.02 0.91 16 37 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 42 H 0.10 2.85 7.05 -2.91 -0.02 2.83 16 43 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 44 H 0.04 1.14 6.03 -2.38 -0.01 1.13 16 45 H 0.08 2.74 8.05 -2.38 -0.02 2.72 16 46 H 0.10 2.70 8.04 -2.39 -0.02 2.68 16 47 H -0.01 -0.28 8.14 -2.39 -0.02 -0.29 16 48 H 0.08 4.13 5.85 -2.39 -0.01 4.12 16 49 H 0.25 14.10 8.31 -92.71 -0.77 13.32 16 50 H 0.02 0.81 7.82 -2.39 -0.02 0.79 16 51 H 0.01 0.32 6.47 -2.39 -0.02 0.31 16 Total: -1.00 -72.92 395.58 0.46 -72.46 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.14 Total: 26.31 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 6.18 Total: 2.27 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -7.85 Total: -127.39 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.04 Total: -22.21 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -72.92 0.46 -72.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046416973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.909 kcal (2) G-P(sol) polarization free energy of solvation -72.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds