Wall clock time and date at job start Wed Apr 1 2020 02:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 110.88659 * 2 1 4 4 C 1.34776 * 120.00066 * 297.57183 * 3 2 1 5 5 O 1.21548 * 120.00055 * 0.02562 * 4 3 2 6 6 C 1.47860 * 119.99803 * 179.97438 * 4 3 2 7 7 C 1.39617 * 120.11418 * 0.02562 * 6 4 3 8 8 C 1.37982 * 120.00696 * 179.97438 * 7 6 4 9 9 C 1.38247 * 120.22822 * 359.97438 * 8 7 6 10 10 C 1.38982 * 120.22059 * 359.97438 * 9 8 7 11 11 N 1.39708 * 120.00551 * 180.02562 * 10 9 8 12 12 C 1.48534 * 110.99743 * 116.76249 * 11 10 9 13 13 C 1.54939 * 103.22552 * 159.72495 * 12 11 10 14 14 C 1.54599 * 102.91974 * 322.58213 * 13 12 11 15 15 C 1.47899 * 111.00051 * 234.15511 * 11 10 9 16 16 C 1.38684 * 119.99264 * 359.78586 * 10 9 8 17 17 C 1.55158 * 111.00325 * 123.92438 * 2 1 3 18 18 C 1.54337 * 103.02094 * 153.38058 * 17 2 1 19 19 N 1.47029 * 107.26344 * 338.14113 * 18 17 2 20 20 C 1.36933 * 125.64741 * 178.84720 * 19 18 17 21 21 H 1.08000 * 120.00261 * 179.69047 * 20 19 18 22 22 C 1.38814 * 120.00033 * 359.69594 * 20 19 18 23 23 N 1.31617 * 120.00259 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00185 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47137 * 270.00003 * 24 22 20 26 26 H 1.48503 * 109.47105 * 29.99716 * 24 22 20 27 27 H 1.48495 * 109.47525 * 149.99528 * 24 22 20 28 28 C 1.47422 * 108.70328 * 358.58542 * 19 18 17 29 29 H 1.09000 * 109.46920 * 182.42610 * 1 2 3 30 30 H 1.08999 * 109.47064 * 302.42663 * 1 2 3 31 31 H 1.09000 * 109.47584 * 62.42937 * 1 2 3 32 32 H 0.97004 * 120.00170 * 117.57722 * 3 2 1 33 33 H 1.08000 * 119.99026 * 359.97438 * 7 6 4 34 34 H 1.07994 * 119.88428 * 180.02562 * 8 7 6 35 35 H 1.08000 * 119.88997 * 179.97438 * 9 8 7 36 36 H 1.09001 * 110.66447 * 278.15326 * 12 11 10 37 37 H 1.08998 * 110.66747 * 41.28414 * 12 11 10 38 38 H 1.08998 * 110.72071 * 204.22363 * 13 12 11 39 39 H 1.08996 * 110.72625 * 80.94314 * 13 12 11 40 40 H 1.09001 * 110.30700 * 263.04575 * 14 13 12 41 41 H 1.08994 * 110.30559 * 140.87597 * 14 13 12 42 42 H 1.08993 * 109.91977 * 333.51157 * 15 11 10 43 43 H 1.09009 * 109.91261 * 94.80515 * 15 11 10 44 44 H 1.07992 * 120.11721 * 180.23636 * 16 10 9 45 45 H 1.08996 * 110.71930 * 271.93465 * 17 2 1 46 46 H 1.08994 * 110.72197 * 35.03631 * 17 2 1 47 47 H 1.08994 * 109.99508 * 218.66337 * 18 17 2 48 48 H 1.08999 * 109.78070 * 97.49112 * 18 17 2 49 49 H 0.97001 * 120.00299 * 180.02562 * 23 22 20 50 50 H 1.08992 * 110.36839 * 143.19749 * 28 19 18 51 51 H 1.09008 * 110.36452 * 265.40913 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1909 -1.0346 5 8 1.1155 1.7970 -1.9675 6 6 2.3145 3.5725 -1.0343 7 6 3.0865 4.0276 0.0363 8 6 3.5773 5.3172 0.0341 9 6 3.3080 6.1626 -1.0261 10 6 2.5415 5.7191 -2.0973 11 7 2.2725 6.5770 -3.1666 12 6 2.8677 6.0608 -4.4258 13 6 2.0600 6.7939 -5.5262 14 6 0.6312 6.8345 -4.9371 15 6 0.8180 6.6717 -3.4173 16 6 2.0477 4.4231 -2.1068 17 6 2.0861 -0.8084 1.2019 18 6 3.4657 -1.2797 0.6955 19 7 3.4271 -1.2428 -0.7738 20 6 4.4639 -1.5661 -1.6078 21 1 4.3331 -1.5111 -2.6785 22 6 5.6832 -1.9646 -1.0771 23 7 5.8428 -2.0312 0.2276 24 14 7.0974 -2.4063 -2.2148 25 1 7.0434 -3.8560 -2.5319 26 1 6.9868 -1.6206 -3.4701 27 1 8.3863 -2.0933 -1.5470 28 6 2.0852 -0.8062 -1.2006 29 1 -0.3633 -1.0268 0.0435 30 1 -0.3633 0.5510 0.8674 31 1 -0.3634 0.4756 -0.9109 32 1 2.5885 1.6832 0.7446 33 1 3.2994 3.3702 0.8662 34 1 4.1746 5.6670 0.8630 35 1 3.6946 7.1710 -1.0221 36 1 3.9245 6.3208 -4.4866 37 1 2.7308 4.9822 -4.5021 38 1 2.0772 6.2290 -6.4582 39 1 2.4433 7.8029 -5.6784 40 1 0.0346 6.0137 -5.3350 41 1 0.1573 7.7904 -5.1598 42 1 0.3227 5.7622 -3.0776 43 1 0.4073 7.5376 -2.8978 44 1 1.4550 4.0752 -2.9398 45 1 2.1922 -0.1708 2.0795 46 1 1.4451 -1.6619 1.4223 47 1 3.6601 -2.2968 1.0357 48 1 4.2424 -0.6089 1.0628 49 1 6.6949 -2.3093 0.5985 50 1 2.1559 -0.1713 -2.0837 51 1 1.4524 -1.6699 -1.4050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046727040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:23 Heat of formation + Delta-G solvation = 11.028429 kcal Electronic energy + Delta-G solvation = -30737.811627 eV Core-core repulsion = 26829.899127 eV Total energy + Delta-G solvation = -3907.912500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.72853 -40.85431 -39.13468 -38.24043 -35.74867 -34.12694 -33.33095 -32.33721 -31.43714 -30.34943 -29.89077 -29.32874 -27.54944 -25.73245 -24.91130 -24.12455 -22.36161 -21.97755 -21.81948 -21.50505 -20.39829 -19.33997 -18.68888 -17.40487 -17.12921 -16.93415 -16.90114 -16.66473 -16.17374 -15.86429 -15.60072 -15.39820 -15.11670 -14.95978 -14.74787 -14.25892 -14.18293 -13.91115 -13.86796 -13.58596 -13.44134 -13.18338 -13.14153 -12.99438 -12.83335 -12.77941 -12.74663 -12.34772 -12.25611 -12.14872 -12.13157 -12.07014 -12.01060 -11.72941 -11.58220 -11.50514 -10.79955 -10.72955 -10.14705 -9.93142 -9.80945 -9.63035 -8.88565 -7.88081 -5.21683 -0.17196 0.21729 1.41416 1.42739 1.51525 1.83357 2.14936 2.45959 2.78085 2.83374 3.29802 3.48563 3.63150 3.66207 3.75441 3.83414 3.87332 4.00651 4.02230 4.04213 4.16167 4.21752 4.26467 4.38049 4.54002 4.60055 4.62215 4.65427 4.73913 4.76476 4.80216 4.83852 4.85333 4.89506 4.90532 4.99397 5.00008 5.05177 5.09236 5.21561 5.23697 5.31662 5.35323 5.36926 5.39779 5.60792 5.65634 5.67940 5.72553 5.75547 6.17968 6.27256 6.57222 7.09765 7.22672 7.74970 8.39417 9.21630 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011041 B = 0.003163 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.393439 B = 8850.970047 C = 9751.764268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.166 3.834 3 N -0.691 5.691 4 C 0.554 3.446 5 O -0.575 6.575 6 C -0.140 4.140 7 C -0.089 4.089 8 C -0.111 4.111 9 C -0.069 4.069 10 C 0.063 3.937 11 N -0.479 5.479 12 C 0.029 3.971 13 C -0.117 4.117 14 C -0.129 4.129 15 C 0.031 3.969 16 C -0.103 4.103 17 C -0.128 4.128 18 C 0.185 3.815 19 N -0.620 5.620 20 C -0.244 4.244 21 H 0.065 0.935 22 C -0.056 4.056 23 N -0.943 5.943 24 Si 0.973 3.027 25 H -0.285 1.285 26 H -0.278 1.278 27 H -0.287 1.287 28 C 0.128 3.872 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.407 0.593 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.155 0.845 36 H 0.089 0.911 37 H 0.031 0.969 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.036 0.964 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.010 0.990 48 H 0.019 0.981 49 H 0.248 0.752 50 H 0.027 0.973 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.682 20.652 -0.055 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.079 3.921 3 N -0.342 5.342 4 C 0.343 3.657 5 O -0.456 6.456 6 C -0.144 4.144 7 C -0.108 4.108 8 C -0.129 4.129 9 C -0.088 4.088 10 C -0.031 4.031 11 N -0.201 5.201 12 C -0.097 4.097 13 C -0.155 4.155 14 C -0.167 4.167 15 C -0.095 4.095 16 C -0.124 4.124 17 C -0.166 4.166 18 C 0.061 3.939 19 N -0.346 5.346 20 C -0.373 4.373 21 H 0.083 0.917 22 C -0.250 4.250 23 N -0.592 5.592 24 Si 0.801 3.199 25 H -0.211 1.211 26 H -0.204 1.204 27 H -0.213 1.213 28 C 0.002 3.998 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.244 0.756 33 H 0.160 0.840 34 H 0.185 0.815 35 H 0.173 0.827 36 H 0.108 0.892 37 H 0.050 0.950 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.111 0.889 42 H 0.055 0.945 43 H 0.111 0.889 44 H 0.129 0.871 45 H 0.118 0.882 46 H 0.112 0.888 47 H 0.028 0.972 48 H 0.037 0.963 49 H 0.058 0.942 50 H 0.046 0.954 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.737 20.795 -0.552 22.969 hybrid contribution 0.881 -1.642 -0.649 1.973 sum -8.856 19.153 -1.201 21.135 Atomic orbital electron populations 1.21911 0.91897 1.03221 1.02705 1.21387 0.94136 0.80672 0.95918 1.45683 1.53842 1.12099 1.22538 1.18604 0.79502 0.85776 0.81810 1.90678 1.41312 1.77429 1.36178 1.19881 1.03293 0.93286 0.97897 1.21603 0.94931 0.97322 0.96949 1.21437 0.99521 0.92424 0.99496 1.21482 0.95040 1.01055 0.91225 1.19099 0.99407 0.89716 0.94919 1.62607 1.10767 1.43829 1.02875 1.23448 1.00490 0.97122 0.88605 1.22491 0.94214 1.01630 0.97118 1.22428 0.97650 1.03441 0.93173 1.23098 0.87039 1.01553 0.97859 1.21637 0.99269 0.94079 0.97412 1.23119 0.96918 1.00043 0.96561 1.20955 0.92945 0.97474 0.82572 1.44674 1.08452 1.78805 1.02711 1.19291 0.90814 1.38041 0.89197 0.91711 1.25497 0.99805 1.02157 0.97541 1.70132 1.24329 1.54383 1.10357 0.85173 0.78882 0.77916 0.77923 1.21145 1.20351 1.21306 1.21976 0.86421 0.94984 0.96433 0.90386 0.90372 0.92893 0.75557 0.84013 0.81542 0.82688 0.89243 0.95018 0.89993 0.89322 0.91485 0.88892 0.94516 0.88935 0.87083 0.88211 0.88830 0.97218 0.96259 0.94220 0.95424 0.95788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 8.58 71.98 0.62 -3.46 16 2 C 0.17 5.85 0.82 5.00 0.00 5.85 16 3 N -0.69 -23.03 5.13 -419.47 -2.15 -25.18 16 4 C 0.55 20.11 7.16 86.79 0.62 20.73 16 5 O -0.57 -24.54 13.14 -3.87 -0.05 -24.59 16 6 C -0.14 -4.26 5.87 -20.10 -0.12 -4.38 16 7 C -0.09 -2.11 9.54 22.54 0.21 -1.90 16 8 C -0.11 -2.06 10.02 22.21 0.22 -1.84 16 9 C -0.07 -1.37 9.96 22.45 0.22 -1.14 16 10 C 0.06 1.52 4.86 38.17 0.19 1.70 16 11 N -0.48 -10.24 5.28 -682.90 -3.60 -13.84 16 12 C 0.03 0.61 6.43 86.65 0.56 1.16 16 13 C -0.12 -1.77 7.06 31.80 0.22 -1.55 16 14 C -0.13 -1.95 6.93 31.47 0.22 -1.73 16 15 C 0.03 0.59 6.48 86.45 0.56 1.15 16 16 C -0.10 -3.03 7.44 22.67 0.17 -2.86 16 17 C -0.13 -4.33 5.99 31.79 0.19 -4.14 16 18 C 0.19 8.90 5.37 86.73 0.47 9.36 16 19 N -0.62 -33.12 3.39 -691.96 -2.35 -35.47 16 20 C -0.24 -14.47 10.28 84.03 0.86 -13.60 16 21 H 0.06 3.85 7.83 -2.91 -0.02 3.83 16 22 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 23 N -0.94 -56.29 10.31 21.65 0.22 -56.07 16 24 Si 0.97 47.14 29.55 68.60 2.03 49.16 16 25 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 C 0.13 5.90 6.10 86.86 0.53 6.43 16 29 H 0.08 2.07 8.11 -2.39 -0.02 2.05 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.78 6.53 -2.39 -0.02 1.76 16 32 H 0.41 11.59 6.52 -92.71 -0.60 10.98 16 33 H 0.14 2.86 6.40 -2.91 -0.02 2.84 16 34 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.03 0.79 7.01 -2.39 -0.02 0.78 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.04 0.83 6.31 -2.39 -0.02 0.81 16 43 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.11 3.65 6.62 -2.91 -0.02 3.63 16 45 H 0.10 2.70 8.05 -2.39 -0.02 2.68 16 46 H 0.09 2.84 8.01 -2.39 -0.02 2.82 16 47 H 0.01 0.52 7.52 -2.39 -0.02 0.50 16 48 H 0.02 1.01 7.37 -2.39 -0.02 0.99 16 49 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 50 H 0.03 1.41 6.31 -2.39 -0.02 1.40 16 51 H 0.02 1.11 8.04 -2.38 -0.02 1.09 16 Total: -1.00 -74.50 394.57 0.64 -73.86 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.33 Total: 25.15 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 6.22 Total: 6.97 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -7.88 Total: -130.55 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.05 Total: -24.59 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -74.50 0.64 -73.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046727040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.891 kcal (2) G-P(sol) polarization free energy of solvation -74.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds