Wall clock time and date at job start Wed Apr 1 2020 03:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38355 * 119.46022 * 2 1 4 4 C 1.38352 * 119.30495 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.85679 * 180.02562 * 4 3 2 6 6 C 1.40019 * 118.28849 * 359.97438 * 4 3 2 7 7 C 1.47846 * 120.55921 * 179.97438 * 6 4 3 8 8 O 1.21550 * 120.00026 * 89.99587 * 7 6 4 9 9 N 1.34775 * 119.99882 * 269.99953 * 7 6 4 10 10 C 1.46497 * 120.00050 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.17587 * 35.44446 * 10 9 7 12 12 C 1.53034 * 109.32657 * 155.00153 * 10 9 7 13 13 C 1.53969 * 108.83161 * 175.67877 * 12 10 9 14 14 H 1.09002 * 112.99358 * 169.00951 * 13 12 10 15 15 C 1.55431 * 106.41436 * 293.82755 * 13 12 10 16 16 C 1.55167 * 100.35675 * 73.37270 * 15 13 12 17 17 H 1.08997 * 112.48521 * 163.35125 * 16 15 13 18 18 C 1.52988 * 109.32574 * 275.89089 * 10 9 7 19 19 N 1.47789 * 104.87521 * 40.82329 * 16 15 13 20 20 C 1.36941 * 125.85231 * 153.28863 * 19 16 15 21 21 H 1.07993 * 120.00259 * 0.02562 * 20 19 16 22 22 C 1.38817 * 119.99753 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99907 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 119.99974 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47114 * 60.00061 * 24 22 20 26 26 H 1.48504 * 109.47368 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47470 * 299.99941 * 24 22 20 28 28 C 1.51004 * 107.66167 * 333.48015 * 19 16 15 29 29 C 1.39518 * 118.88444 * 0.25459 * 6 4 3 30 30 C 1.50699 * 119.72077 * 179.74619 * 29 6 4 31 31 N 1.31702 * 120.56226 * 359.49788 * 29 6 4 32 32 H 1.08997 * 109.47058 * 90.00012 * 1 2 3 33 33 H 1.09005 * 109.46984 * 209.99460 * 1 2 3 34 34 H 1.09001 * 109.47154 * 329.99752 * 1 2 3 35 35 H 1.08004 * 120.34729 * 359.97438 * 3 2 1 36 36 H 1.09006 * 109.47000 * 269.97582 * 5 4 3 37 37 H 1.09005 * 109.47074 * 29.96921 * 5 4 3 38 38 H 1.08996 * 109.47265 * 149.97456 * 5 4 3 39 39 H 0.97002 * 119.99750 * 0.02562 * 9 7 6 40 40 H 1.08994 * 109.57387 * 55.87300 * 12 10 9 41 41 H 1.09000 * 109.57669 * 295.48481 * 12 10 9 42 42 H 1.08998 * 111.23553 * 192.01790 * 15 13 12 43 43 H 1.09001 * 111.23305 * 316.46105 * 15 13 12 44 44 H 1.08994 * 109.53327 * 304.52650 * 18 10 9 45 45 H 1.09001 * 109.53519 * 64.75973 * 18 10 9 46 46 H 0.96998 * 119.99917 * 179.97438 * 23 22 20 47 47 H 1.09004 * 109.92959 * 242.29611 * 28 19 16 48 48 H 1.09001 * 110.91693 * 120.43117 * 28 19 16 49 49 H 1.09004 * 109.47104 * 89.99865 * 30 29 6 50 50 H 1.08993 * 109.47396 * 209.99694 * 30 29 6 51 51 H 1.09003 * 109.46872 * 330.00609 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5709 1.2009 -0.0005 5 6 4.3474 2.4925 0.0000 6 6 4.2312 -0.0339 -0.0005 7 6 5.7083 -0.0964 -0.0016 8 8 6.3163 -0.1216 1.0505 9 7 6.3806 -0.1255 -1.1694 10 6 7.8443 -0.1869 -1.1705 11 1 8.1777 -0.7979 -0.3317 12 6 8.3237 -0.8188 -2.4793 13 6 9.8624 -0.7787 -2.5162 14 1 10.2847 -1.3773 -3.3234 15 6 10.2610 0.7216 -2.5937 16 6 9.9438 1.1698 -1.1425 17 1 10.4152 2.1188 -0.8868 18 6 8.4105 1.2267 -1.0238 19 7 10.4147 0.0579 -0.2904 20 6 10.8258 0.1636 1.0115 21 1 10.8228 1.1255 1.5023 22 6 11.2465 -0.9658 1.7004 23 7 11.2506 -2.1381 1.1020 24 14 11.8066 -0.8218 3.4765 25 1 10.6947 -0.2899 4.3046 26 1 12.2032 -2.1611 3.9807 27 1 12.9680 0.1003 3.5561 28 6 10.3635 -1.2054 -1.1161 29 6 3.4717 -1.2042 -0.0054 30 6 4.1628 -2.5433 -0.0112 31 7 2.1558 -1.1486 0.0000 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8901 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6443 2.1382 -0.0004 36 1 4.5346 2.8044 -1.0276 37 1 3.7718 3.2623 0.5141 38 1 5.2973 2.3452 0.5138 39 1 5.8954 -0.1049 -2.0090 40 1 7.9233 -0.2578 -3.3237 41 1 7.9838 -1.8531 -2.5315 42 1 11.3176 0.8374 -2.8349 43 1 9.6346 1.2602 -3.3048 44 1 8.0075 1.8642 -1.8106 45 1 8.1352 1.6303 -0.0493 46 1 11.5449 -2.9272 1.5832 47 1 9.6644 -1.9128 -0.6700 48 1 11.3517 -1.6583 -1.1962 49 1 4.3296 -2.8706 1.0150 50 1 3.5385 -3.2722 -0.5280 51 1 5.1203 -2.4558 -0.5248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047116848.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:15 Heat of formation + Delta-G solvation = 18.883974 kcal Electronic energy + Delta-G solvation = -31432.224211 eV Core-core repulsion = 27524.652354 eV Total energy + Delta-G solvation = -3907.571858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.93240 -39.75446 -38.32919 -34.44409 -34.35834 -33.85859 -32.70419 -30.68504 -29.82411 -29.14697 -28.37029 -27.88270 -27.13484 -25.27021 -23.14289 -22.98244 -21.59182 -21.12406 -20.15043 -19.47537 -18.69730 -17.42506 -17.12502 -16.88211 -15.98583 -15.26185 -14.98390 -14.80405 -14.49695 -14.29641 -13.91922 -13.68581 -13.49065 -13.44147 -13.37591 -13.09200 -12.98396 -12.79092 -12.72916 -12.42879 -12.16936 -11.99066 -11.89790 -11.80824 -11.79298 -11.71188 -11.52744 -11.17681 -10.70380 -10.64342 -10.53547 -10.10562 -9.95737 -9.79348 -9.75447 -9.64866 -9.56103 -9.35068 -9.26780 -8.88874 -8.61368 -8.54018 -6.75658 -5.61635 -2.92410 0.77554 1.05108 2.82671 3.32688 3.49620 3.52218 3.54015 3.55722 4.00722 4.38784 4.42845 4.59486 4.78163 4.88287 5.14035 5.19631 5.21190 5.22638 5.25614 5.30656 5.36653 5.40485 5.42754 5.50409 5.55512 5.58516 5.64886 5.67826 5.84674 5.88948 5.89420 5.96587 6.01967 6.04379 6.06521 6.08047 6.10775 6.12883 6.21438 6.50043 6.56451 6.61638 6.67412 6.85577 6.88523 6.98213 7.06602 7.57164 7.61890 7.76740 7.82468 7.86645 8.26938 8.49800 9.25678 9.90260 10.57889 11.52123 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013296 B = 0.003354 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.464235 B = 8345.555484 C = 9039.202118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.142 3.858 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.125 4.125 6 C -0.181 4.181 7 C 0.563 3.437 8 O -0.510 6.510 9 N -0.720 5.720 10 C 0.146 3.854 11 H 0.116 0.884 12 C -0.112 4.112 13 C -0.119 4.119 14 H 0.081 0.919 15 C -0.127 4.127 16 C 0.158 3.842 17 H 0.063 0.937 18 C -0.135 4.135 19 N -0.598 5.598 20 C -0.218 4.218 21 H 0.075 0.925 22 C -0.007 4.007 23 N -0.924 5.924 24 Si 0.907 3.093 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.287 1.287 28 C 0.180 3.820 29 C 0.173 3.827 30 C -0.111 4.111 31 N -0.490 5.490 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.138 0.862 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.391 0.609 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.251 0.749 47 H 0.049 0.951 48 H 0.047 0.953 49 H 0.086 0.914 50 H 0.082 0.918 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.258 5.795 -9.994 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.005 3.995 3 C -0.205 4.205 4 C -0.009 4.009 5 C -0.181 4.181 6 C -0.186 4.186 7 C 0.346 3.654 8 O -0.384 6.384 9 N -0.370 5.370 10 C 0.043 3.957 11 H 0.134 0.866 12 C -0.150 4.150 13 C -0.138 4.138 14 H 0.099 0.901 15 C -0.165 4.165 16 C 0.049 3.951 17 H 0.081 0.919 18 C -0.176 4.176 19 N -0.323 5.323 20 C -0.346 4.346 21 H 0.093 0.907 22 C -0.203 4.203 23 N -0.572 5.572 24 Si 0.738 3.262 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.214 1.214 28 C 0.056 3.944 29 C 0.035 3.965 30 C -0.168 4.168 31 N -0.201 5.201 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.155 0.845 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.224 0.776 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.104 0.896 50 H 0.100 0.900 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.173 4.833 -8.996 20.845 hybrid contribution 0.397 0.877 0.618 1.144 sum -17.775 5.710 -8.378 20.464 Atomic orbital electron populations 1.20731 0.88647 1.03578 1.03133 1.21376 0.97027 0.88144 0.92991 1.21723 0.93677 0.99398 1.05711 1.20327 0.93713 0.94546 0.92319 1.20930 1.00636 0.93254 1.03273 1.20821 0.95096 0.94447 1.08284 1.17946 0.85832 0.76908 0.84683 1.90928 1.68763 1.47712 1.30986 1.46281 1.08464 1.74789 1.07443 1.21247 0.76050 0.98264 1.00101 0.86623 1.21970 0.96933 1.00019 0.96068 1.22810 0.93678 0.96731 1.00603 0.90050 1.22978 1.00340 0.95861 0.97369 1.21450 0.91012 0.92745 0.89857 0.91898 1.22613 0.99175 0.95406 1.00419 1.45493 1.76122 1.01652 1.09069 1.18952 1.35660 0.94046 0.85956 0.90707 1.24695 1.01999 0.95487 0.98089 1.69887 1.53601 0.98032 1.35703 0.86262 0.78404 0.76461 0.85066 1.21200 1.21731 1.21403 1.21952 0.99561 0.88334 0.84520 1.21316 0.88796 0.94739 0.91660 1.20826 0.99885 0.92015 1.04084 1.67361 1.08893 1.29104 1.14708 0.90261 0.90336 0.90625 0.84462 0.90021 0.90519 0.90248 0.77643 0.92778 0.92109 0.91808 0.92321 0.93898 0.92298 0.93891 0.93300 0.93433 0.89558 0.89952 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.16 36.00 0.37 -0.40 16 2 C 0.14 1.58 6.78 -82.51 -0.56 1.02 16 3 C -0.19 -1.94 9.43 -39.50 -0.37 -2.31 16 4 C 0.00 -0.01 5.95 -103.91 -0.62 -0.63 16 5 C -0.12 -1.34 9.69 36.01 0.35 -0.99 16 6 C -0.18 -2.65 5.65 -104.82 -0.59 -3.24 16 7 C 0.56 9.64 4.30 -12.33 -0.05 9.59 16 8 O -0.51 -11.51 16.77 5.32 0.09 -11.42 16 9 N -0.72 -10.79 5.07 -54.74 -0.28 -11.07 16 10 C 0.15 2.61 2.07 -67.92 -0.14 2.47 16 11 H 0.12 2.74 5.40 -51.93 -0.28 2.46 16 12 C -0.11 -1.71 4.93 -26.21 -0.13 -1.84 16 13 C -0.12 -2.06 4.27 -87.93 -0.38 -2.43 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.13 -2.12 6.22 -24.29 -0.15 -2.27 16 16 C 0.16 3.16 4.25 -65.61 -0.28 2.88 16 17 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.13 -2.46 5.26 -26.27 -0.14 -2.59 16 19 N -0.60 -14.84 2.53 -158.11 -0.40 -15.24 16 20 C -0.22 -6.14 10.31 -15.06 -0.16 -6.29 16 21 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 22 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 23 N -0.92 -27.45 10.50 55.49 0.58 -26.87 16 24 Si 0.91 23.10 29.55 -169.99 -5.02 18.07 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C 0.18 4.19 4.29 -0.61 0.00 4.19 16 29 C 0.17 2.45 6.82 -82.17 -0.56 1.89 16 30 C -0.11 -1.44 9.79 36.01 0.35 -1.09 16 31 N -0.49 -6.58 10.17 -5.42 -0.06 -6.63 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 35 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.08 1.08 7.19 -51.93 -0.37 0.70 16 39 H 0.39 4.63 8.58 -40.82 -0.35 4.28 16 40 H 0.05 0.69 7.97 -51.93 -0.41 0.27 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16 44 H 0.04 0.66 7.98 -51.93 -0.41 0.24 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.05 1.27 6.26 -51.93 -0.32 0.94 16 48 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 49 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.08 1.06 7.07 -51.93 -0.37 0.69 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -33.91 398.97 -10.58 -44.49 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.35 Total: 4.99 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -3.16 Total: -2.34 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.15 Total: -59.81 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.91 -10.58 -44.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047116848.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.371 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds