Wall clock time and date at job start Wed Apr 1 2020 03:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38353 * 119.46268 * 2 1 4 4 C 1.38358 * 119.30117 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.85004 * 179.97438 * 4 3 2 6 6 C 1.40022 * 118.29370 * 359.72496 * 4 3 2 7 7 C 1.47835 * 120.56331 * 180.28907 * 6 4 3 8 8 O 1.21558 * 120.00063 * 261.10454 * 7 6 4 9 9 N 1.34774 * 120.00336 * 81.09825 * 7 6 4 10 10 C 1.46499 * 120.00486 * 176.10349 * 9 7 6 11 11 H 1.08999 * 109.31762 * 46.15729 * 10 9 7 12 12 C 1.53030 * 109.32672 * 286.69243 * 10 9 7 13 13 C 1.53971 * 108.82469 * 295.14054 * 12 10 9 14 14 H 1.09007 * 113.67126 * 168.56145 * 13 12 10 15 15 C 1.55430 * 106.41479 * 293.82274 * 13 12 10 16 16 C 1.55167 * 100.35493 * 73.37620 * 15 13 12 17 17 H 1.08991 * 113.05292 * 162.98886 * 16 15 13 18 18 C 1.52983 * 109.32498 * 165.79721 * 10 9 7 19 19 N 1.47792 * 104.25141 * 40.54937 * 16 15 13 20 20 C 1.36935 * 125.85417 * 153.51806 * 19 16 15 21 21 H 1.08002 * 120.00218 * 7.89935 * 20 19 16 22 22 C 1.38820 * 119.99964 * 187.90316 * 20 19 16 23 23 N 1.31620 * 119.99840 * 6.95608 * 22 20 19 24 24 Si 1.86799 * 119.99913 * 186.95417 * 22 20 19 25 25 H 1.48495 * 109.47008 * 94.96460 * 24 22 20 26 26 H 1.48503 * 109.47144 * 214.96671 * 24 22 20 27 27 H 1.48500 * 109.47324 * 334.96662 * 24 22 20 28 28 C 1.47081 * 108.29031 * 333.54242 * 19 16 15 29 29 C 1.39529 * 118.87577 * 0.51017 * 6 4 3 30 30 C 1.50696 * 119.71311 * 179.75423 * 29 6 4 31 31 N 1.31690 * 120.56716 * 359.48330 * 29 6 4 32 32 H 1.08995 * 109.47841 * 270.02680 * 1 2 3 33 33 H 1.09002 * 109.47230 * 30.02813 * 1 2 3 34 34 H 1.09008 * 109.47173 * 150.02273 * 1 2 3 35 35 H 1.07997 * 120.34754 * 359.97129 * 3 2 1 36 36 H 1.09003 * 109.46561 * 95.32272 * 5 4 3 37 37 H 1.08996 * 109.47127 * 215.31851 * 5 4 3 38 38 H 1.08998 * 109.47548 * 335.32433 * 5 4 3 39 39 H 0.97005 * 119.99569 * 356.11594 * 9 7 6 40 40 H 1.08996 * 109.57787 * 54.93876 * 12 10 9 41 41 H 1.08996 * 109.57806 * 175.33742 * 12 10 9 42 42 H 1.09008 * 111.23506 * 315.60019 * 15 13 12 43 43 H 1.09004 * 111.24061 * 191.15755 * 15 13 12 44 44 H 1.09005 * 109.53031 * 185.06611 * 18 10 9 45 45 H 1.08998 * 109.53260 * 305.21413 * 18 10 9 46 46 H 0.96997 * 119.99325 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.97922 * 120.45878 * 28 19 16 48 48 H 1.09001 * 109.97412 * 241.74103 * 28 19 16 49 49 H 1.08997 * 109.47426 * 263.83438 * 30 29 6 50 50 H 1.09002 * 109.47142 * 143.83141 * 30 29 6 51 51 H 1.09006 * 109.47227 * 23.83959 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2007 -0.0005 5 6 4.3475 2.4924 -0.0011 6 6 4.2312 -0.0341 0.0049 7 6 5.7082 -0.0968 0.0110 8 8 6.3128 -0.2875 -1.0262 9 7 6.3845 0.0576 1.1665 10 6 7.8420 -0.0892 1.1875 11 1 8.2722 0.4637 0.3524 12 6 8.2039 -1.5697 1.0500 13 6 7.6880 -2.3245 2.2889 14 1 7.7255 -3.4092 2.1876 15 6 8.5068 -1.7940 3.4988 16 6 7.8735 -0.3878 3.6692 17 1 8.0852 0.0609 4.6397 18 6 8.3885 0.4721 2.5015 19 7 6.4286 -0.6109 3.4535 20 6 5.4137 0.1498 3.9696 21 1 5.6386 1.0699 4.4886 22 6 4.0957 -0.2617 3.8260 23 7 3.8276 -1.4454 3.3169 24 14 2.7026 0.8647 4.3553 25 1 2.2181 1.6370 3.1832 26 1 1.5896 0.0503 4.9060 27 1 3.1928 1.8022 5.3975 28 6 6.2675 -1.7904 2.5897 29 6 3.4715 -1.2044 -0.0004 30 6 4.1626 -2.5435 -0.0003 31 7 2.1558 -1.1487 0.0000 32 1 -0.3634 0.0005 1.0276 33 1 -0.3634 0.8897 -0.5143 34 1 -0.3634 -0.8903 -0.5135 35 1 1.6444 2.1381 -0.0005 36 1 4.6167 2.7548 1.0220 37 1 5.2531 2.3716 -0.5956 38 1 3.7342 3.2848 -0.4301 39 1 5.9062 0.2658 1.9843 40 1 7.7377 -1.9779 0.1533 41 1 9.2865 -1.6763 0.9819 42 1 9.5673 -1.7228 3.2571 43 1 8.3464 -2.4092 4.3843 44 1 9.4781 0.4471 2.4833 45 1 8.0496 1.5004 2.6275 46 1 2.9067 -1.7327 3.2163 47 1 5.6844 -2.5531 3.1058 48 1 5.7719 -1.5071 1.6612 49 1 4.2351 -2.9151 -1.0224 50 1 3.5896 -3.2481 0.6026 51 1 5.1630 -2.4362 0.4191 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047116849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:19 Heat of formation + Delta-G solvation = 65.909396 kcal Electronic energy + Delta-G solvation = -34100.747392 eV Core-core repulsion = 30195.214709 eV Total energy + Delta-G solvation = -3905.532683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.97562 -39.77587 -37.69315 -33.83726 -33.72342 -33.26227 -32.96354 -30.79426 -30.39532 -28.68392 -28.08333 -27.37798 -26.59379 -25.24452 -23.21479 -22.55329 -21.24575 -20.63632 -19.68834 -19.56388 -18.80546 -17.36168 -16.70656 -16.46759 -15.43077 -15.19113 -14.64668 -14.52344 -14.36478 -13.97753 -13.64056 -13.60853 -13.01661 -12.92967 -12.80497 -12.62745 -12.57179 -12.44500 -12.30854 -12.25564 -11.93329 -11.87329 -11.75323 -11.72870 -11.50269 -11.39782 -11.28246 -11.23413 -10.94971 -10.89554 -10.58382 -10.16050 -9.84781 -9.75141 -9.64369 -9.46233 -9.33463 -8.93740 -8.85754 -8.75339 -8.16858 -7.53739 -6.92563 -5.86157 -3.28530 1.50121 1.76019 3.26868 3.30776 3.33091 3.36437 3.99517 4.28700 4.33517 4.67920 4.96634 5.06607 5.18972 5.22617 5.24764 5.44344 5.46200 5.53431 5.58664 5.62947 5.77269 5.79607 5.80440 5.83037 5.86297 5.88308 5.93286 6.01717 6.05872 6.08012 6.13739 6.18877 6.23830 6.25525 6.27414 6.33063 6.43294 6.56545 6.61979 6.67008 6.68796 6.71146 6.77310 6.86278 6.90243 7.19682 7.41794 7.49217 7.61308 7.76323 8.10986 8.52732 8.61454 9.01607 9.21863 9.61191 10.28661 11.16703 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.006496 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.215711 B = 4309.549380 C = 5148.645654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.137 3.863 3 C -0.189 4.189 4 C -0.008 4.008 5 C -0.119 4.119 6 C -0.161 4.161 7 C 0.556 3.444 8 O -0.570 6.570 9 N -0.684 5.684 10 C 0.157 3.843 11 H 0.063 0.937 12 C -0.122 4.122 13 C -0.122 4.122 14 H 0.076 0.924 15 C -0.126 4.126 16 C 0.149 3.851 17 H 0.067 0.933 18 C -0.140 4.140 19 N -0.591 5.591 20 C -0.268 4.268 21 H 0.079 0.921 22 C 0.014 3.986 23 N -0.886 5.886 24 Si 0.889 3.111 25 H -0.281 1.281 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.132 3.868 29 C 0.205 3.795 30 C -0.103 4.103 31 N -0.487 5.487 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.441 0.559 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.257 0.743 47 H 0.056 0.944 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.082 0.918 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 3.084 -4.335 5.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.000 4.000 3 C -0.209 4.209 4 C -0.017 4.017 5 C -0.176 4.176 6 C -0.166 4.166 7 C 0.341 3.659 8 O -0.451 6.451 9 N -0.352 5.352 10 C 0.051 3.949 11 H 0.081 0.919 12 C -0.161 4.161 13 C -0.141 4.141 14 H 0.095 0.905 15 C -0.165 4.165 16 C 0.041 3.959 17 H 0.085 0.915 18 C -0.180 4.180 19 N -0.318 5.318 20 C -0.395 4.395 21 H 0.097 0.903 22 C -0.186 4.186 23 N -0.529 5.529 24 Si 0.719 3.281 25 H -0.207 1.207 26 H -0.215 1.215 27 H -0.206 1.206 28 C 0.008 3.992 29 C 0.066 3.934 30 C -0.160 4.160 31 N -0.197 5.197 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.146 0.854 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.300 0.700 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.101 0.899 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.706 2.177 -4.923 5.647 hybrid contribution -0.548 1.440 0.909 1.789 sum 1.159 3.618 -4.015 5.527 Atomic orbital electron populations 1.20671 0.89412 1.02854 1.02834 1.21185 0.96588 0.88391 0.93880 1.21543 0.93766 0.98997 1.06614 1.20171 0.93710 0.94432 0.93340 1.20854 0.99811 0.93595 1.03299 1.20524 0.94754 0.94271 1.07041 1.18091 0.86479 0.77067 0.84271 1.90687 1.69734 1.51781 1.32948 1.47997 1.07536 1.66747 1.12959 1.20641 0.81543 0.95571 0.97102 0.91861 1.22074 0.99800 0.95682 0.98524 1.22848 0.98998 0.98178 0.94107 0.90538 1.22957 0.97672 0.97642 0.98184 1.21632 0.85879 0.93310 0.95068 0.91538 1.22519 0.99196 1.00263 0.96061 1.44972 0.99379 1.31676 1.55769 1.19019 0.84846 1.01920 1.33719 0.90323 1.24799 0.96980 0.96418 1.00434 1.69918 1.18568 1.17076 1.47387 0.86432 0.82836 0.80185 0.78654 1.20730 1.21509 1.20563 1.22389 0.90982 0.89393 0.96446 1.20977 0.88403 0.94368 0.89636 1.20824 1.00836 0.92608 1.01721 1.67264 1.09220 1.28659 1.14595 0.90687 0.91159 0.90633 0.85380 0.90008 0.91097 0.91159 0.69979 0.91652 0.92217 0.92181 0.92074 0.91765 0.92066 0.93248 0.92557 0.90277 0.91384 0.89891 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 10.16 36.00 0.37 -1.02 16 2 C 0.14 2.50 6.78 -82.51 -0.56 1.94 16 3 C -0.19 -3.36 9.41 -39.49 -0.37 -3.73 16 4 C -0.01 -0.16 5.95 -103.91 -0.62 -0.78 16 5 C -0.12 -1.92 9.60 36.01 0.35 -1.58 16 6 C -0.16 -3.40 5.53 -104.82 -0.58 -3.98 16 7 C 0.56 11.86 3.35 -12.33 -0.04 11.82 16 8 O -0.57 -13.06 16.20 5.31 0.09 -12.98 16 9 N -0.68 -13.98 2.74 -54.75 -0.15 -14.13 16 10 C 0.16 2.84 2.70 -67.92 -0.18 2.66 16 11 H 0.06 1.14 7.87 -51.93 -0.41 0.73 16 12 C -0.12 -2.11 5.20 -26.21 -0.14 -2.25 16 13 C -0.12 -2.21 4.33 -87.93 -0.38 -2.59 16 14 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 15 C -0.13 -2.10 6.18 -24.29 -0.15 -2.25 16 16 C 0.15 2.73 4.30 -65.61 -0.28 2.45 16 17 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 18 C -0.14 -2.31 5.44 -26.28 -0.14 -2.45 16 19 N -0.59 -12.97 1.77 -161.37 -0.29 -13.25 16 20 C -0.27 -6.49 8.51 -15.06 -0.13 -6.62 16 21 H 0.08 1.90 7.84 -52.49 -0.41 1.49 16 22 C 0.01 0.36 5.37 -17.43 -0.09 0.27 16 23 N -0.89 -22.65 10.52 55.49 0.58 -22.06 16 24 Si 0.89 20.48 29.56 -169.99 -5.02 15.46 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.13 2.86 3.69 -2.83 -0.01 2.85 16 29 C 0.20 4.31 6.78 -82.17 -0.56 3.75 16 30 C -0.10 -2.02 9.71 36.00 0.35 -1.67 16 31 N -0.49 -9.90 10.17 -5.42 -0.06 -9.96 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.07 1.17 7.40 -51.93 -0.38 0.79 16 38 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 39 H 0.44 9.70 3.59 -41.83 -0.15 9.54 16 40 H 0.06 1.23 7.25 -51.93 -0.38 0.85 16 41 H 0.06 0.89 7.97 -51.93 -0.41 0.47 16 42 H 0.06 0.85 7.75 -51.92 -0.40 0.45 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.89 8.00 -51.93 -0.42 0.47 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 47 H 0.06 1.42 6.81 -51.93 -0.35 1.07 16 48 H 0.08 1.75 1.62 -58.40 -0.09 1.65 16 49 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 51 H 0.08 1.71 4.54 -51.93 -0.24 1.48 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -28.10 381.70 -10.12 -38.21 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -7.85 Total: 16.13 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -3.17 Total: -3.17 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.09 Total: -59.40 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.10 -10.12 -38.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047116849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.122 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds