Wall clock time and date at job start Wed Apr 1 2020 03:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38353 * 119.46268 * 2 1 4 4 C 1.38358 * 119.30117 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.85004 * 179.97438 * 4 3 2 6 6 C 1.40022 * 118.29370 * 359.72496 * 4 3 2 7 7 C 1.47835 * 120.56331 * 180.28907 * 6 4 3 8 8 O 1.21558 * 120.00063 * 261.10454 * 7 6 4 9 9 N 1.34774 * 120.00336 * 81.09825 * 7 6 4 10 10 C 1.46499 * 120.00486 * 176.10349 * 9 7 6 11 11 H 1.08999 * 109.31762 * 46.15729 * 10 9 7 12 12 C 1.53030 * 109.32672 * 286.69243 * 10 9 7 13 13 C 1.53971 * 108.82469 * 295.14054 * 12 10 9 14 14 H 1.09007 * 113.67126 * 168.56145 * 13 12 10 15 15 C 1.55430 * 106.41479 * 293.82274 * 13 12 10 16 16 C 1.55167 * 100.35493 * 73.37620 * 15 13 12 17 17 H 1.08991 * 113.05292 * 162.98886 * 16 15 13 18 18 C 1.52983 * 109.32498 * 165.79721 * 10 9 7 19 19 N 1.47792 * 104.25141 * 40.54937 * 16 15 13 20 20 C 1.36935 * 125.85417 * 153.51806 * 19 16 15 21 21 H 1.08002 * 120.00218 * 7.89935 * 20 19 16 22 22 C 1.38820 * 119.99964 * 187.90316 * 20 19 16 23 23 N 1.31620 * 119.99840 * 6.95608 * 22 20 19 24 24 Si 1.86799 * 119.99913 * 186.95417 * 22 20 19 25 25 H 1.48495 * 109.47008 * 94.96460 * 24 22 20 26 26 H 1.48503 * 109.47144 * 214.96671 * 24 22 20 27 27 H 1.48500 * 109.47324 * 334.96662 * 24 22 20 28 28 C 1.47081 * 108.29031 * 333.54242 * 19 16 15 29 29 C 1.39529 * 118.87577 * 0.51017 * 6 4 3 30 30 C 1.50696 * 119.71311 * 179.75423 * 29 6 4 31 31 N 1.31690 * 120.56716 * 359.48330 * 29 6 4 32 32 H 1.08995 * 109.47841 * 270.02680 * 1 2 3 33 33 H 1.09002 * 109.47230 * 30.02813 * 1 2 3 34 34 H 1.09008 * 109.47173 * 150.02273 * 1 2 3 35 35 H 1.07997 * 120.34754 * 359.97129 * 3 2 1 36 36 H 1.09003 * 109.46561 * 95.32272 * 5 4 3 37 37 H 1.08996 * 109.47127 * 215.31851 * 5 4 3 38 38 H 1.08998 * 109.47548 * 335.32433 * 5 4 3 39 39 H 0.97005 * 119.99569 * 356.11594 * 9 7 6 40 40 H 1.08996 * 109.57787 * 54.93876 * 12 10 9 41 41 H 1.08996 * 109.57806 * 175.33742 * 12 10 9 42 42 H 1.09008 * 111.23506 * 315.60019 * 15 13 12 43 43 H 1.09004 * 111.24061 * 191.15755 * 15 13 12 44 44 H 1.09005 * 109.53031 * 185.06611 * 18 10 9 45 45 H 1.08998 * 109.53260 * 305.21413 * 18 10 9 46 46 H 0.96997 * 119.99325 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.97922 * 120.45878 * 28 19 16 48 48 H 1.09001 * 109.97412 * 241.74103 * 28 19 16 49 49 H 1.08997 * 109.47426 * 263.83438 * 30 29 6 50 50 H 1.09002 * 109.47142 * 143.83141 * 30 29 6 51 51 H 1.09006 * 109.47227 * 23.83959 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2007 -0.0005 5 6 4.3475 2.4924 -0.0011 6 6 4.2312 -0.0341 0.0049 7 6 5.7082 -0.0968 0.0110 8 8 6.3128 -0.2875 -1.0262 9 7 6.3845 0.0576 1.1665 10 6 7.8420 -0.0892 1.1875 11 1 8.2722 0.4637 0.3524 12 6 8.2039 -1.5697 1.0500 13 6 7.6880 -2.3245 2.2889 14 1 7.7255 -3.4092 2.1876 15 6 8.5068 -1.7940 3.4988 16 6 7.8735 -0.3878 3.6692 17 1 8.0852 0.0609 4.6397 18 6 8.3885 0.4721 2.5015 19 7 6.4286 -0.6109 3.4535 20 6 5.4137 0.1498 3.9696 21 1 5.6386 1.0699 4.4886 22 6 4.0957 -0.2617 3.8260 23 7 3.8276 -1.4454 3.3169 24 14 2.7026 0.8647 4.3553 25 1 2.2181 1.6370 3.1832 26 1 1.5896 0.0503 4.9060 27 1 3.1928 1.8022 5.3975 28 6 6.2675 -1.7904 2.5897 29 6 3.4715 -1.2044 -0.0004 30 6 4.1626 -2.5435 -0.0003 31 7 2.1558 -1.1487 0.0000 32 1 -0.3634 0.0005 1.0276 33 1 -0.3634 0.8897 -0.5143 34 1 -0.3634 -0.8903 -0.5135 35 1 1.6444 2.1381 -0.0005 36 1 4.6167 2.7548 1.0220 37 1 5.2531 2.3716 -0.5956 38 1 3.7342 3.2848 -0.4301 39 1 5.9062 0.2658 1.9843 40 1 7.7377 -1.9779 0.1533 41 1 9.2865 -1.6763 0.9819 42 1 9.5673 -1.7228 3.2571 43 1 8.3464 -2.4092 4.3843 44 1 9.4781 0.4471 2.4833 45 1 8.0496 1.5004 2.6275 46 1 2.9067 -1.7327 3.2163 47 1 5.6844 -2.5531 3.1058 48 1 5.7719 -1.5071 1.6612 49 1 4.2351 -2.9151 -1.0224 50 1 3.5896 -3.2481 0.6026 51 1 5.1630 -2.4362 0.4191 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047116849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:18 Heat of formation + Delta-G solvation = 52.166493 kcal Electronic energy + Delta-G solvation = -34101.343329 eV Core-core repulsion = 30195.214709 eV Total energy + Delta-G solvation = -3906.128620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.49863 -41.22491 -39.28360 -35.48640 -35.20968 -34.77862 -34.44917 -32.39067 -31.94751 -30.07191 -29.61645 -28.72397 -28.02824 -26.91912 -24.83033 -23.98769 -22.67583 -22.07071 -21.28658 -21.09822 -20.29855 -19.01004 -18.29680 -17.97770 -16.98195 -16.81001 -16.31671 -15.97070 -15.85642 -15.48038 -15.25931 -15.11359 -14.42301 -14.31356 -14.19498 -14.09412 -13.95678 -13.89983 -13.76908 -13.64538 -13.39723 -13.30745 -13.20379 -13.08612 -13.01295 -12.90539 -12.77306 -12.67750 -12.60025 -12.57428 -12.15976 -11.89616 -11.57272 -11.31604 -11.08659 -11.00994 -10.81934 -10.66287 -10.38783 -10.29700 -9.63103 -9.14320 -8.70062 -7.74718 -5.15848 0.04051 0.30221 1.41141 1.44903 1.49696 1.69616 2.47286 2.52134 2.81784 3.30488 3.37897 3.63191 3.66945 3.69695 3.81946 3.98007 4.03432 4.10889 4.17279 4.37692 4.39240 4.41365 4.46964 4.48418 4.56164 4.58112 4.59921 4.65479 4.66767 4.72882 4.78296 4.80146 4.87359 4.90363 4.92460 5.08295 5.12436 5.14265 5.16567 5.20511 5.27142 5.29554 5.35547 5.42526 5.52500 5.62720 5.78304 5.87829 5.89624 5.98998 6.28414 6.96567 7.06554 7.16045 7.56232 7.81443 8.47590 9.23837 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.006496 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.215711 B = 4309.549380 C = 5148.645654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.124 3.876 3 C -0.192 4.192 4 C -0.023 4.023 5 C -0.114 4.114 6 C -0.189 4.189 7 C 0.559 3.441 8 O -0.595 6.595 9 N -0.684 5.684 10 C 0.146 3.854 11 H 0.066 0.934 12 C -0.114 4.114 13 C -0.121 4.121 14 H 0.084 0.916 15 C -0.113 4.113 16 C 0.138 3.862 17 H 0.071 0.929 18 C -0.128 4.128 19 N -0.602 5.602 20 C -0.264 4.264 21 H 0.079 0.921 22 C -0.022 4.022 23 N -0.896 5.896 24 Si 0.927 3.073 25 H -0.277 1.277 26 H -0.306 1.306 27 H -0.274 1.274 28 C 0.132 3.868 29 C 0.185 3.815 30 C -0.095 4.095 31 N -0.507 5.507 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.164 0.836 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.435 0.565 40 H 0.043 0.957 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.053 0.947 44 H 0.104 0.896 45 H 0.057 0.943 46 H 0.241 0.759 47 H 0.010 0.990 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.122 4.798 -4.465 7.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.014 4.014 3 C -0.211 4.211 4 C -0.031 4.031 5 C -0.170 4.170 6 C -0.194 4.194 7 C 0.345 3.655 8 O -0.478 6.478 9 N -0.350 5.350 10 C 0.042 3.958 11 H 0.084 0.916 12 C -0.152 4.152 13 C -0.140 4.140 14 H 0.102 0.898 15 C -0.151 4.151 16 C 0.032 3.968 17 H 0.089 0.911 18 C -0.168 4.168 19 N -0.329 5.329 20 C -0.392 4.392 21 H 0.096 0.904 22 C -0.221 4.221 23 N -0.540 5.540 24 Si 0.757 3.243 25 H -0.203 1.203 26 H -0.233 1.233 27 H -0.199 1.199 28 C 0.008 3.992 29 C 0.047 3.953 30 C -0.152 4.152 31 N -0.218 5.218 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.182 0.818 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.292 0.708 40 H 0.062 0.938 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.072 0.928 44 H 0.122 0.878 45 H 0.075 0.925 46 H 0.051 0.949 47 H 0.029 0.971 48 H 0.095 0.905 49 H 0.099 0.901 50 H 0.093 0.907 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.820 3.908 -5.038 6.972 hybrid contribution -0.893 0.913 0.984 1.612 sum 1.926 4.821 -4.054 6.587 Atomic orbital electron populations 1.20787 0.86348 1.04838 1.03439 1.21975 0.98714 0.88103 0.92570 1.21989 0.93428 1.00346 1.05350 1.20637 0.94808 0.94858 0.92842 1.20880 0.99783 0.93248 1.03126 1.20677 0.94740 0.95270 1.08693 1.18149 0.86721 0.76567 0.84101 1.90649 1.70310 1.53205 1.33681 1.48065 1.08665 1.66065 1.12251 1.20927 0.80327 0.96341 0.98253 0.91588 1.22013 1.01663 0.94646 0.96872 1.22813 0.96958 0.98734 0.95471 0.89823 1.22919 0.99339 0.95911 0.96969 1.21910 0.83883 0.94928 0.96119 0.91113 1.22429 1.01375 0.99210 0.93789 1.45089 1.00751 1.31371 1.55688 1.19167 0.85528 1.01970 1.32548 0.90355 1.25216 0.98333 0.97198 1.01356 1.70113 1.17268 1.17976 1.48660 0.85833 0.80954 0.79103 0.78454 1.20342 1.23341 1.19888 1.22280 0.92940 0.88290 0.95685 1.21097 0.89040 0.94649 0.90508 1.20719 0.99768 0.92565 1.02149 1.67300 1.08975 1.30095 1.15455 0.90526 0.87768 0.90159 0.81803 0.90402 0.91966 0.87685 0.70750 0.93816 0.88691 0.88365 0.92834 0.87815 0.92472 0.94870 0.97143 0.90514 0.90104 0.90714 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.49 10.16 71.23 0.72 -1.77 16 2 C 0.12 4.42 6.78 42.57 0.29 4.70 16 3 C -0.19 -6.48 9.41 22.33 0.21 -6.27 16 4 C -0.02 -0.88 5.95 -19.40 -0.12 -0.99 16 5 C -0.11 -3.52 9.60 71.24 0.68 -2.84 16 6 C -0.19 -8.10 5.53 -19.99 -0.11 -8.21 16 7 C 0.56 24.19 3.35 86.78 0.29 24.48 16 8 O -0.59 -27.70 16.20 -3.90 -0.06 -27.76 16 9 N -0.68 -27.91 2.74 -445.40 -1.22 -29.13 16 10 C 0.15 5.04 2.70 45.00 0.12 5.17 16 11 H 0.07 2.26 7.87 -2.39 -0.02 2.24 16 12 C -0.11 -3.70 5.20 30.93 0.16 -3.54 16 13 C -0.12 -4.22 4.33 -9.05 -0.04 -4.26 16 14 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 15 C -0.11 -3.44 6.18 32.17 0.20 -3.24 16 16 C 0.14 4.76 4.30 45.78 0.20 4.95 16 17 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 18 C -0.13 -3.83 5.44 30.89 0.17 -3.66 16 19 N -0.60 -26.28 1.77 -664.47 -1.17 -27.45 16 20 C -0.26 -12.82 8.51 84.04 0.72 -12.10 16 21 H 0.08 3.74 7.84 -2.91 -0.02 3.72 16 22 C -0.02 -1.13 5.37 84.86 0.46 -0.68 16 23 N -0.90 -47.44 10.52 21.65 0.23 -47.21 16 24 Si 0.93 42.20 29.56 68.60 2.03 44.23 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.31 -14.69 7.11 99.48 0.71 -13.98 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 C 0.13 5.84 3.69 86.85 0.32 6.16 16 29 C 0.18 8.02 6.78 42.89 0.29 8.31 16 30 C -0.09 -3.93 9.71 71.23 0.69 -3.24 16 31 N -0.51 -20.96 10.17 -171.06 -1.74 -22.70 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.10 1.94 8.07 -2.39 -0.02 1.92 16 34 H 0.08 1.97 8.14 -2.38 -0.02 1.96 16 35 H 0.16 4.20 8.06 -2.91 -0.02 4.17 16 36 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.06 2.01 7.40 -2.39 -0.02 1.99 16 38 H 0.10 2.44 8.07 -2.39 -0.02 2.42 16 39 H 0.44 19.17 3.59 -94.70 -0.34 18.83 16 40 H 0.04 1.62 7.25 -2.39 -0.02 1.60 16 41 H 0.09 2.44 7.97 -2.39 -0.02 2.42 16 42 H 0.10 2.28 7.75 -2.38 -0.02 2.26 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.10 2.32 8.00 -2.38 -0.02 2.30 16 45 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.24 13.29 8.31 -92.71 -0.77 12.52 16 47 H 0.01 0.55 6.81 -2.39 -0.02 0.53 16 48 H 0.08 3.48 1.62 -15.16 -0.02 3.46 16 49 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 50 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 51 H 0.07 2.98 4.54 -2.38 -0.01 2.97 16 Total: -1.00 -63.48 381.70 3.90 -59.58 By element: Atomic # 1 Polarization: 46.87 SS G_CDS: 0.59 Total: 47.45 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 5.25 Total: 2.98 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -3.91 Total: -126.49 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.06 Total: -27.76 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -63.48 3.90 -59.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047116849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.748 kcal (2) G-P(sol) polarization free energy of solvation -63.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds